Mercurial > repos > deepakjadmin > r_caret_test2_jan
diff r_caret_test1-revision_toolshed/select_mol.xml @ 0:39926de9e698 draft default tip
Uploaded
| author | deepakjadmin |
|---|---|
| date | Wed, 06 Jan 2016 02:33:31 -0500 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/r_caret_test1-revision_toolshed/select_mol.xml Wed Jan 06 02:33:31 2016 -0500 @@ -0,0 +1,20 @@ +<?xml version="1.0"?> +<tool id="aaacaret004" name="Extract Compound IDs From Prediction Result based on scores " version="1.0.1"> +<description>This tool extracts compounds from prediction result based on given score</description> +<command interpreter="Rscript">mayachemtool/condition.R $predictionfile $LT $GT $type $SelectedCompound </command> + +<inputs> +<param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file " /> +<param name="type" type="select" label="Active/Positive or Inactive/Negative" help ="select type of molecule"> + <option value="Active" selected="True">Active/Positive</option> + <option value="Inactive">Inactive/Negative</option> +</param> +<param name="GT" type="float" value="0.5" label="Score greater than and equal to" help ="define value above which compound selected default is 0.5" /> +<param name="LT" type="float" value="1.0" label="Score less than and equal to" help ="define value below which compound selected default is 1" /> +</inputs> +<outputs> +<data name="SelectedCompound" type="data" format="txt" label="Refind-${predictionfile.name}" /> +</outputs> +<help> +</help> +</tool>