diff toolrfe.xml @ 0:a4a2ad5a214e draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolrfe.xml	Thu Nov 05 02:37:56 2015 -0500
@@ -0,0 +1,49 @@
+<tool id="aafeature@1290" name="Feature Selection" >
+<description>
+ This tool used for extract best feature subsets for model building 
+</description>
+<requirements>
+     <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
+    <requirement type="package" version="1.0.0">caret-tools</requirement>
+</requirements>
+<!--command interpreter="bash">step3run.sh $file1 $model $output1  2>/dev/null </command-->
+
+<command interpreter="Rscript">featureselect/feature_selection.R $input $profile $finalset $function1 $resampling $repeat $number  2 &amp;&gt;1 >/dev/null </command>
+
+<inputs>
+<param name="input"  format="RData" type="data" label="Select input data file" />
+<param name="function1" type="select" display="radio" label="Select appropriate function for algorithm"  >
+                <option value="rfFuncs" selected="true">random forest based function </option>
+                <option value="lmFuncs">linear model based function</option>
+                <option value="treebagFuncs">treebag(CART) based function</option>
+                <option value="nbFuncs">neive bayes based function</option>
+</param>
+
+<param name="resampling" type="select" label="Select appropriate resampling method"  >
+                <option value="repeatedcv" selected="true">repeatedcv </option>
+                <option value="boot">boot</option>
+                <option value="cv">cv</option>
+                <option value="boot632">boot632</option>
+</param>
+ <param name="repeat" type="select" label="Set Number of times to repeat" help="default is 3 ">
+               <option value="3" selected="true">3</option>
+                <option value="1">1</option>
+                <option value="5">5</option>
+                <option value="10">10</option>
+        </param>
+<param name="number" type="select" label="Set Number of times Resample" help="default is 10">
+                <option value="10" selected="true">10</option>
+                <option value="5">5</option>
+                <option value="15">15</option>
+                <option value="20">20</option>
+                <option value="25">25</option>
+        </param>
+
+</inputs>
+<outputs>
+<data format="RData" name="profile" label="$function1-profile" />
+<data format="RData" name="finalset" label="Inputdata.RData "/>
+</outputs>
+
+</tool>