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author deepakjadmin
date Thu, 05 Nov 2015 02:37:56 -0500
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1 <tool id="cddssddddxpsssp2" name="Create script from the template file ">
2 <description>
3 used to create script file from user given input to build a model
4 </description>
5 <command interpreter="python">
6 #if $OPTION11.PARAMAETERS == "Advance"
7 modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.CON1.MISSINGFILTEREVAL --missingfilterecho $OPTION11.CON1.MISSINGFILTERECHO --missingfilterresult $OPTION11.CON1.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.CON1.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.CON1.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.CON2.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.CON2.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.CON2.INITIALDATASPLITRESULT --saampling $OPTION11.CON2.SAAMPLING --percent $OPTION11.CON2.PERCENT --nzveval $OPTION11.CON3.NZVEVAL --nzvresult $OPTION11.CON3.NZVRESULT --nzvecho $OPTION11.CON3.NZVECHO --corrfiltereval $OPTION11.CON4.CORRFILTEREVAL --corrfilterresult $OPTION11.CON4.CORRFILTERRESULT --corrfilterecho $OPTION11.CON4.CORRFILTERECHO --threshholdcor $OPTION11.CON4.THRESHHOLDCOR --preproceval $OPTION11.CON5.PREPROCEVAL --preprocecho $OPTION11.CON5.PREPROCECHO --preprocresult $OPTION11.CON5.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.CON6.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.CON6.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.CON6.RESAMPLENUMBER --resamplenumberpercent $OPTION11.CON6.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --classprobstexresult1 $OPTION11.CLASSPROBSTEXRESULT1 --classprobstexecho1 $OPTION11.CLASSPROBSTEXECHO1 --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document;
8 #end if
9 #if $OPTION11.PARAMAETERS == "basic"
10 modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.MISSINGFILTEREVAL --missingfilterecho $OPTION11.MISSINGFILTERECHO --missingfilterresult $OPTION11.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.INITIALDATASPLITRESULT --saampling $OPTION11.SAAMPLING --percent $OPTION11.PERCENT --nzveval $OPTION11.NZVEVAL --nzvresult $OPTION11.NZVRESULT --nzvecho $OPTION11.NZVECHO --corrfiltereval $OPTION11.CORRFILTEREVAL --corrfilterresult $OPTION11.CORRFILTERRESULT --corrfilterecho $OPTION11.CORRFILTERECHO --threshholdcor $OPTION11.THRESHHOLDCOR --preproceval $OPTION11.PREPROCEVAL --preprocecho $OPTION11.PREPROCECHO --preprocresult $OPTION11.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.RESAMPLENUMBER --resamplenumberpercent $OPTION11.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --classprobstexresult1 $OPTION11.CLASSPROBSTEXRESULT1 --classprobstexecho1 $OPTION11.CLASSPROBSTEXECHO1 --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document;
11 #end if
12 </command>
13 <inputs>
14 <param name="METHOD" type="select" label="SELECT METHOD FOR MODEL BUILDING" >
15 <option value="pls">Partial Least Square</option>
16 <option value="bagFDA">bag-Fourier Discriminant Analysis</option>
17 <option value="blackboost">black-boost- Boosting Method</option>
18 <option value="earth">Earth-MARS based method</option>
19 <option value="rf">Random Forest</option>
20 <option value="RRF">RRFglobal -Variant of Random Forest</option>
21 <option value="svmRadial">SVM-Radial</option>
22 <option value="svmPoly">SVM-Polynomial</option>
23 <option value="ada">ada-boost</option>
24 <option value="glm">Generalised linear model </option>
25 <option value="treebag">tree based bagging method</option>
26 <option value="nb">Naive Bayes</option>
27 <option value="knn">K-nearest neighbour</option>
28 </param>
29 <param name="RDATA" format="RData" type="data" label="SELECT FILE CONATINING INPUT DATA" help="RData format" />
30
31
32 <conditional name="OPTION11">
33 <param name="PARAMAETERS" type="select">
34 <option value="basic" selected="TRUE" >Use optimized parameters </option>
35 <option value="Advance"> Customized parameters </option>
36 </param>
37
38 <when value="basic">
39
40 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
41
42 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
43 <param name="GETDATAINFORESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
44
45 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
46
47 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
48
49 <param name="MISSINGFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
50
51 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0.2" help="For column wise default is 0.2"/>
52
53 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0.2" help="For row wise default is 0.2"/>
54
55 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
56
57 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
58
59 <param name="PCARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
60
61 <param name="PCACOMP" type="hidden" value="3" help="set according to need. Default is 3"/>
62
63 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
64
65 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
66
67 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
68
69 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
70
71 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
72
73 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
74
75 <param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/>
76
77 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
78
79 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
80
81 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
82
83 <param name="NZVRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
84
85 <param name="NZVECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
86
87 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
88
89 <param name="CORRFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
90
91 <param name="CORRFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
92
93 <param name="THRESHHOLDCOR" type="hidden" value="0.75" help="set according to need .default is 0.75"/>
94
95 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
96
97 <param name="PREPROCECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
98
99 <param name="PREPROCRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
100
101 <param name="SETUPWORKERSEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. default is False"/>
102
103 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
104
105 <param name="SETUPWORKERSRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
106
107 <param name="NUMWORKERS" type="hidden" value="1" help ="default is 1"/>
108
109 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
110
111 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
112
113 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
114
115 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
116
117 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
118
119 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
120
121 <param name="SETUPGRIDSIZE" type="hidden" value="3" help="default is 3 "/>
122
123 <param name="FITMODELEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
124
125 <param name="FITMODELRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
126
127 <param name="FITMODELECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
128
129 <param name="MODELDESCRECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
130
131 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
132
133 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
134
135 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
136
137 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
138
139 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
140
141 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
142
143 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
144
145 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
146
147 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
148
149 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
150
151 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
152
153 <param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
154
155 <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
156
157 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
158
159 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
160
161 </when>
162
163
164 <when value="Advance">
165 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
166 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
167 <param name="GETDATAINFORESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
168
169 <conditional name="CON1">
170 <param name="PARAMAETERS1" type="select" label="1. REMOVE MISSING VALUES FROM THE INPUT DATA">
171 <option value="YES">YES </option>
172 <option value="NO" selected="true">NO </option>
173 </param>
174
175 <when value="YES">
176 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
177 <param name="MISSINGFILTERECHO" type="select" label="1(i). Write Code in Document" help="set True if wish to print .default is False" >
178 <option value="FALSE" selected="true">false</option>
179 <option value="TRUE">true</option>
180 </param>
181 <param name="MISSINGFILTERRESULT" type="select" label="1(ii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
182 <option value="hide">hide-result will not written in file</option>
183 <option value="tex" selected="true">tex-result will written in file</option>
184 </param>
185 <param name="MISSINGFILTERTHRESHC" type="select" label="1(iii). Set Cutoff Value for Missing Data value Columwise" help="For column wise default is 0.1 means column which has missing value more than 10% will be removed ">
186 <option value="0.1">0.1</option>
187 <option value="0.2">0.2</option>
188 <option value="0.25">0.25</option>
189 <option value="0.3">0.3</option>
190 <option value="0.35">0.35</option>
191 <option value="0.4">0.4</option>
192 <option value="0.45">0.45</option>
193 <option value="0.5">0.5</option>
194 <option value="0.55">0.55</option>
195 <option value="0.6">0.6</option>
196 <option value="0.65">0.65</option>
197 <option value="0.7">0.7</option>
198 <option value="0.75">0.75</option>
199 <option value="0.8">0.8</option>
200 </param>
201 <param name="MISSINGFILTERTHRESHR" type="select" label="1(iv). Set Cutoff Value for Missing Data Value Rowwise " help="For row wise default is 0.1 means row having more than 10% missing values will be removed">
202 <option value="0.1">0.1</option>
203 <option value="0.2">0.2</option>
204 <option value="0.25">0.25</option>
205 <option value="0.3">0.3</option>
206 <option value="0.35">0.35</option>
207 <option value="0.4">0.4</option>
208 <option value="0.45">0.45</option>
209 <option value="0.5">0.5</option>
210 <option value="0.55">0.55</option>
211 <option value="0.6">0.6</option>
212 <option value="0.65">0.65</option>
213 <option value="0.7">0.7</option>
214 <option value="0.75">0.75</option>
215 <option value="0.8">0.8</option>
216 </param>
217 </when>
218 <when value="NO">
219 <param name="MISSINGFILTEREVAL" type="hidden" value= "FALSE" help="set TRUE if wish to evaluate. default is FALSE"/>
220
221 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
222
223 <param name="MISSINGFILTERRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
224
225 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0" />
226
227 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0" />
228
229 </when>
230 </conditional>
231
232 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
233
234 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
235
236 <param name="PCARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
237
238 <param name="PCACOMP" type="select" label="2. FIND NUMBER OF PRINCIPLE COMPONENT" help="performs PCA and gives number of PC. Default is 3 ">
239 <option value="3">3</option>
240 <option value="4">4</option>
241 <option value="5">5</option>
242 <option value="6">6</option>
243 <option value="7">7</option>
244 <option value="8">8</option>
245 <option value="9">9</option>
246 <option value="10">10</option>
247 </param>
248
249 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
250
251 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
252
253 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
254
255 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
256
257
258 <conditional name="CON2">
259 <param name="PARAMAETERS2" type="select" label="3. CUSTOMIZE PARAMETERS FOR DATA SPLITTING " help="splits data in test and train set.">
260 <option value="YES2">YES </option>
261 <option value="NO2" selected="true">NO </option>
262 </param>
263 <when value="YES2">
264 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
265 <param name="SAAMPLING" type="select" label="3(i). Select Sampling Method" help="Defualt is with No sampling. you may choose downsample or upsample" >
266 <option value="garBage" selected="true">No Sampling</option>
267 <option value="downsampling">downsample</option>
268 <option value="upsampling">upsample</option>
269 </param>
270 <param name="INITIALDATASPLITECHO" type="select" label="3(ii). Write Code in Document" help="set True if wish to print .default is False" >
271 <option value="FALSE">false</option>
272 <option value="TRUE">true</option>
273 </param>
274 <param name="INITIALDATASPLITRESULT" type="select" value="tex" label="3(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
275 <option value="tex" selected="true">tex-result will written in file</option>
276 <option value="hide">hide-result will not written in file</option>
277 </param>
278 <param name="PERCENT" type="select" label="3(iv) .Set Value at Which Data Will be Splitted in Train and Test Set" help="default is 0.8">
279 <option value="0.8">0.8</option>
280 <option value="0.75">0.75</option>
281 <option value="0.6">0.6</option>
282 <option value="0.5">0.5</option>
283 </param>
284 </when>
285 <when value="NO2">
286 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
287
288 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
289
290 <param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/>
291
292 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
293
294 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
295
296 </when>
297 </conditional>
298
299 <conditional name="CON3">
300 <param name="PARAMAETERS3" type="select" label="4. REMOVE NEAR ZERO VARIANCE " help="removes NZV from train and test set.">
301 <option value="YES3">YES </option>
302 <option value="NO3" selected="true">NO </option>
303 </param>
304 <when value="YES3">
305
306 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
307
308
309 <param name="NZVECHO" type="select" label="4(i). Write Code in Document" help="set True if wish to print .default is False">
310 <option value="FALSE">false</option>
311 <option value="TRUE">true</option>
312 </param>
313
314 <param name="NZVRESULT" type="select" label="4(ii). Write Result in document" help="Set tex if wish to write result in output pdf file. default is tex">
315 <option value="hide">hide-result will not written in file</option>
316 <option value="tex" selected="true">tex-result will written in file</option>
317 </param>
318 </when>
319 <when value="NO3">
320 <param name="NZVEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
321 <param name="NZVECHO" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
322 <param name="NZVRESULT" type="hidden" value="hide" help="set TRUE if wish to evaluate."/>
323 </when>
324 </conditional>
325
326 <!--param name="NZVECHO" type="select" label="Write Code in Document" help="set True if wish to print .default is False">
327 <option value="FALSE">false</option>
328 <option value="TRUE">true</option>
329 </param-->
330
331 <conditional name="CON4">
332 <param name="PARAMAETERS4" type="select" label="5. REMOVE CORRELATED VALUES" help="removes correlated attributes from train and test set.">
333 <option value="YES4">YES </option>
334 <option value="NO4" selected="true">NO </option>
335 </param>
336 <when value="YES4">
337 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
338 <param name="THRESHHOLDCOR" type="select" label="5(i). cutoff for correlated Value " help="set according to need .default is 0.75 means attributes have 75% or more correlation are ommited from the data">
339 <option value="0.75">0.75</option>
340 <option value="0.4">0.4</option>
341 <option value="0.45">0.45</option>
342 <option value="0.5">0.5</option>
343 <option value="0.55">0.55</option>
344 <option value="0.6">0.6</option>
345 <option value="0.65">0.65</option>
346 <option value="0.7">0.7</option>
347 <option value="0.8">0.8</option>
348 <option value="0.85">0.85</option>
349 <option value="0.9">0.9</option>
350 <option value="0.95">0.95</option>
351 </param>
352 <param name="CORRFILTERECHO" type="select" label="5(ii). Write Code in Document" help="set True if wish to print .default is False" >
353 <option value="FALSE">false</option>
354 <option value="TRUE">true</option>
355 </param>
356 <param name="CORRFILTERRESULT" type="select" label="5(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
357 <option value="hide">hide-result will not written in file</option>
358 <option value="tex" selected="true">tex-result will written in file</option>
359 </param>
360 </when>
361 <when value="NO4">
362 <param name="CORRFILTEREVAL" type="hidden" value="FALSE"/>
363
364 <param name="CORRFILTERRESULT" type="hidden" value="hide" />
365
366 <param name="CORRFILTERECHO" type="hidden" value="FALSE" />
367
368 <param name="THRESHHOLDCOR" type="hidden" value="0" />
369 </when>
370 </conditional>
371
372 <conditional name="CON5">
373 <param name="PARAMAETERS5" type="select" label="6. PERFORM CENTERING AND SCALING OF DATA " help="centering and scaling of train and test set.">
374 <option value="YES5">YES </option>
375 <option value="NO5" selected="true">NO </option>
376 </param>
377
378 <when value="YES5">
379 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
380 <param name="PREPROCECHO" type="select" label="6(i). Write Code in Document" help="set True if wish to write code in document .default is False" >
381 <option value="FALSE">false</option>
382 <option value="TRUE">true</option>
383 </param>
384 <param name="PREPROCRESULT" type="select" label="6(ii). Write Result in document " help="Set tex if wish to write result in output pdf file. default is tex">
385 <option value="hide">hide-result will not written in file</option>
386 <option value="tex" selected="true">tex-result will written in file</option>
387 </param>
388 </when>
389 <when value="NO5">
390 <param name="PREPROCEVAL" type="hidden" value="FALSE"/>
391
392 <param name="PREPROCECHO" type="hidden" value="FALSE" />
393
394 <param name="PREPROCRESULT" type="hidden" value="hide" />
395
396 </when>
397 </conditional>
398
399 <param name="SETUPWORKERSEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is False"/>
400 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
401 <param name="NUMWORKERS" type="select" label="7. SET NUMBER OF PROCESSORS " help ="default is 1">
402 <option value="1">1</option>
403 <option value="2">2</option>
404 <option value="4">4</option>
405 <option value="6">6</option>
406 <option value="8">8</option>
407 <option value="16">16</option>
408 </param>
409 <param name="SETUPWORKERSRESULT" type="hidden" value="hide" />
410
411 <conditional name="CON6">
412
413 <param name="PARAMAETERS6" type="select" label="8. CUSTOMIZE RESAMPLING PARAMETERS" help="resampling for cross validation">
414 <option value="YES6">YES </option>
415 <option value="NO6" selected="true">NO </option>
416 </param>
417 <when value="YES6">
418 <param name="SETUPRESAMPLINGECHO" type="select" label="8(i). write code for resampling" help="set True if wish to print .default is False">
419 <option value="FALSE">false</option>
420 <option value="TRUE">true</option>
421 </param>
422 <param name="SETUPRESAMPLINGRESULT" type="select" label="8(ii). Write Result in document " help="Set tex if wish to write in output pdf file. default is hide">
423 <option value="hide">hide-result will not written in file</option>
424 <option value="tex">tex-result will written in file</option>
425 </param>
426 <param name="RESAMPLENUMBER" type="select" label="8(iii). Set Number of times Resample" help="default is 10 ">
427 <option value="10">10</option>
428 <option value="5">5</option>
429 <option value="15">15</option>
430 <option value="20">20</option>
431 <option value="25">25</option>
432 </param>
433 <param name="RESAMPLENUMBERPERCENT" type="select" label="8(iv). Set Percent splitting of data for resampling" help="default is 0.75">
434 <option value="0.75">0.75</option>
435 <option value="0.4">0.4</option>
436 <option value="0.45">0.45</option>
437 <option value="0.5">0.5</option>
438 <option value="0.55">0.55</option>
439 <option value="0.6">0.6</option>
440 <option value="0.65">0.65</option>
441 <option value="0.7">0.7</option>
442 <option value="0.8">0.8</option>
443 </param>
444 </when>
445 <when value="NO6">
446 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
447
448 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
449
450 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
451
452 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
453
454 </when>
455 </conditional>
456 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
457
458 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
459
460 <param name="SETUPGRIDSIZE" type="select" label="9. SET SIZE OF GRID" help="default is 3 ">
461 <option value="3">3</option>
462 <option value="4">4</option>
463 <option value="5">5</option>
464 <option value="6">6</option>
465 <option value="7">7</option>
466 <option value="8">8</option>
467 <option value="9">9</option>
468 <option value="10">10</option>
469 <option value="11">11</option>
470 <option value="12">12</option>
471 <option value="13">13</option>
472 <option value="14">14</option>
473 <option value="15">15</option>
474 <option value="16">16</option>
475 <option value="17">17</option>
476 <option value="18">18</option>
477 <option value="19">19</option>
478 <option value="20">20</option>
479 </param>
480
481 <param name="FITMODELEVAL" type="boolean" checked="true" value="true" label="10. BUILD A MODEL AND WRITE RESULT IN DOCUMENT" help="default is TRUE"/>
482 <param name="FITMODELRESULT" type="hidden" value="tex" />
483 <param name="FITMODELECHO" type="select" label="10(i). Write Code for model building in Document" help="set True if wish to write code in document .default is False" >
484 <option value="FALSE">false</option>
485 <option value="TRUE">true</option>
486 </param>
487 <param name="MODELDESCRECHO" type="select" label="10(ii). Write code for Model Description " help="set True if wish to print .default is False" >
488 <option value="FALSE">false</option>
489 <option value="TRUE">true</option>
490 </param>
491 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
492
493 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
494
495 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
496
497 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
498
499 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
500
501 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
502
503 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
504
505 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
506
507 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
508
509 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
510
511 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
512
513 <param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
514
515 <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
516
517 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
518
519 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
520
521 </when>
522 </conditional>
523 </inputs>
524
525 <outputs>
526 <data format="RData" label="Model" name="model" />
527 <data format="pdf" label="Document" name="document" />
528 </outputs>
529 <help>
530
531 .. class:: infomark
532
533
534
535 **Instruction**
536
537 ----------
538
539 Users may change any parameter as their requirement. For normal practice
540
541 user required to provide only input csv file and method for model building.
542
543 More details are given in user manual.Please click here
544
545
546
547
548 </help>
549
550
551
552 </tool>