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1 <tool id="acaretreg003" name="Create script from the template file for regression ">
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2 <description>
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3 used to create script file from user given input to build a model
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4 </description>
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5 <requirements>
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6 <requirement type="set_environment">R_ROOT_DIR</requirement>
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7 <requirement type="package" version="3.2.0">R</requirement>
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8 <requirement type="package" version="1.0.0">caret-tools</requirement>
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9 </requirements>
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10 <command interpreter="python">
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11 #if $OPTION11.PARAMAETERS == "Advance"
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12 caret_regression/tool2/modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.CON1.MISSINGFILTEREVAL --missingfilterecho $OPTION11.CON1.MISSINGFILTERECHO --missingfilterresult $OPTION11.CON1.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.CON1.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.CON1.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.CON2.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.CON2.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.CON2.INITIALDATASPLITRESULT --percent $OPTION11.CON2.PERCENT --nzveval $OPTION11.CON3.NZVEVAL --nzvresult $OPTION11.CON3.NZVRESULT --nzvecho $OPTION11.CON3.NZVECHO --corrfiltereval $OPTION11.CON4.CORRFILTEREVAL --corrfilterresult $OPTION11.CON4.CORRFILTERRESULT --corrfilterecho $OPTION11.CON4.CORRFILTERECHO --threshholdcor $OPTION11.CON4.THRESHHOLDCOR --preproceval $OPTION11.CON5.PREPROCEVAL --preprocecho $OPTION11.CON5.PREPROCECHO --preprocresult $OPTION11.CON5.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.CON6.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.CON6.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.CON6.RESAMPLENUMBER --resamplenumberpercent $OPTION11.CON6.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document;
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13 #end if
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14 #if $OPTION11.PARAMAETERS == "basic"
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15 caret_regression/tool2/modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.MISSINGFILTEREVAL --missingfilterecho $OPTION11.MISSINGFILTERECHO --missingfilterresult $OPTION11.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.INITIALDATASPLITRESULT --percent $OPTION11.PERCENT --nzveval $OPTION11.NZVEVAL --nzvresult $OPTION11.NZVRESULT --nzvecho $OPTION11.NZVECHO --corrfiltereval $OPTION11.CORRFILTEREVAL --corrfilterresult $OPTION11.CORRFILTERRESULT --corrfilterecho $OPTION11.CORRFILTERECHO --threshholdcor $OPTION11.THRESHHOLDCOR --preproceval $OPTION11.PREPROCEVAL --preprocecho $OPTION11.PREPROCECHO --preprocresult $OPTION11.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.RESAMPLENUMBER --resamplenumberpercent $OPTION11.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document;
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16 #end if
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17 </command>
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18 <inputs>
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19 <param name="METHOD" type="select" label="Select Method to Train Data" >
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20 <option value="gbm">Generalized Boosting</option>
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21 <option value="treebag">treebag-Bagged CART</option>
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22 <option value="earth">earth-MARS method</option>
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23 <option value="Boruta">Boruta-Random forest with feature selection</option>
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24 <option value="bstLs">Boosted Linear Model</option>
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25 <option value="glm">Generalized Linear Model</option>
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26 <option value="pls" selected="true">Partial Least Square</option>
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27 <option value="svmRadial">SVM radial basis function</option>
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28 <option value="svmLinear">SVM Linear function</option>
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29 <option value="rpart">rpart-CART</option>
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30 <option value="rf">Random Forest</option>
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31 <option value="knn">k-Nearest Neighbors</option>
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32 <!--option value="bagFDA">bag-Fourier Discriminant Analysis</option>
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33 <option value="gbm">Generalized Boosting</option>
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34 <option value="blackboost">black-boost- Boosting Method</option>
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35 <option value="earth">Earth-MARS based method</option>
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36 <option value="rf">Random Forest</option>
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37 <option value="RRF">RRFglobal -Variant of Random Forest</option>
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38 <option value="svmRadial">SVM-Radial</option>
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39 <option value="svmPoly">SVM-Polynomial</option>
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40 <option value="ada">ada-boost</option>
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41 <option value="glm">Generalised linear model </option>
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42 <option value="treebag">tree based bagging method</option>
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43 <option value="nb">Naive Bayes</option>
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44 <option value="knn">K-nearest neighbour</option-->
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45 </param>
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46 <param name="RDATA" format="data" type="data" label="Select File Containing Training Data" help="RData format" />
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47
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48
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49 <conditional name="OPTION11">
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50 <param name="PARAMAETERS" type="select">
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51 <option value="basic" selected="TRUE" >Use optimized parameters </option>
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52 <option value="Advance"> Customized parameters </option>
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53 </param>
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54
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55 <when value="basic">
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56
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57 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
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58
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59 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
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60 <param name="GETDATAINFORESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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61
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62 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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63
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64 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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65
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66 <param name="MISSINGFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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67
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68 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0.2" help="For column wise default is 0.2"/>
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69
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70 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0.2" help="For row wise default is 0.2"/>
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71
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72 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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73
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74 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
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75
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76 <param name="PCARESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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77
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78 <param name="PCACOMP" type="hidden" value="3" help="set according to need. Default is 3"/>
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79
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80 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
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81
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82 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
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83
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84 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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85
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86 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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87
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88 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
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89
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90 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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91
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92
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93 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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94
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95 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
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96
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97 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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98
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99 <param name="NZVRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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100
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101 <param name="NZVECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
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102
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103 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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104
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105 <param name="CORRFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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106
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107 <param name="CORRFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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108
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109 <param name="THRESHHOLDCOR" type="hidden" value="0.75" help="set according to need .default is 0.75"/>
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110
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111 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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112
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113 <param name="PREPROCECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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114
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115 <param name="PREPROCRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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116
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117 <param name="SETUPWORKERSEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. default is False"/>
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118
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119 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
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120
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121 <param name="SETUPWORKERSRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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122
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123 <param name="NUMWORKERS" type="hidden" value="1" help ="default is 1"/>
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124
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125 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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126
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127 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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128
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129 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
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130
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131 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
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132
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133 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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134
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135 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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136
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137 <param name="SETUPGRIDSIZE" type="hidden" value="3" help="default is 3 "/>
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138
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139 <param name="FITMODELEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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140
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141 <param name="FITMODELRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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142
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143 <param name="FITMODELECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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144
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145 <param name="MODELDESCRECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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146
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147 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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148
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149 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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150
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151 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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152
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153 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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154
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155 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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156
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157 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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158
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159 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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160
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161 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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162
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163 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
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164
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165 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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166
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167 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
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168
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169 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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170
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171 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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172
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173 </when>
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174
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175
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176 <when value="Advance">
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177 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
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178 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
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179 <param name="GETDATAINFORESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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180
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181 <conditional name="CON1">
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182 <param name="PARAMAETERS1" type="select" label="1. Remove Missing Values from the input data">
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183 <option value="YES">YES </option>
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184 <option value="NO" selected="true">NO </option>
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185 </param>
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186
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187 <when value="YES">
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188 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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189 <param name="MISSINGFILTERECHO" type="select" label="1(i). Write Code in Document" help="set True if wish to print .default is False" >
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190 <option value="FALSE" selected="true">false</option>
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191 <option value="TRUE">true</option>
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192 </param>
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193 <param name="MISSINGFILTERRESULT" type="select" label="1(ii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
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194 <option value="hide">hide-result will not written in file</option>
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195 <option value="tex" selected="true">tex-result will written in file</option>
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196 </param>
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197 <param name="MISSINGFILTERTHRESHC" type="select" label="1(iii). Set Cutoff Value for Missing Data value Columwise" help="For column wise default is 0.1 means column which has missing value more than 10% will be removed ">
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198 <option value="0.1">0.1</option>
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199 <option value="0.2">0.2</option>
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200 <option value="0.25">0.25</option>
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201 <option value="0.3">0.3</option>
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202 <option value="0.35">0.35</option>
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203 <option value="0.4">0.4</option>
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204 <option value="0.45">0.45</option>
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205 <option value="0.5">0.5</option>
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206 <option value="0.55">0.55</option>
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207 <option value="0.6">0.6</option>
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208 <option value="0.65">0.65</option>
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209 <option value="0.7">0.7</option>
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210 <option value="0.75">0.75</option>
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211 <option value="0.8">0.8</option>
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212 </param>
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213 <param name="MISSINGFILTERTHRESHR" type="select" label="1(iv). Set Cutoff Value for Missing Data Value Rowwise " help="For row wise default is 0.1 means row having more than 10% missing values will be removed">
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214 <option value="0.1">0.1</option>
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215 <option value="0.2">0.2</option>
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216 <option value="0.25">0.25</option>
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217 <option value="0.3">0.3</option>
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218 <option value="0.35">0.35</option>
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219 <option value="0.4">0.4</option>
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220 <option value="0.45">0.45</option>
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221 <option value="0.5">0.5</option>
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222 <option value="0.55">0.55</option>
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223 <option value="0.6">0.6</option>
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224 <option value="0.65">0.65</option>
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225 <option value="0.7">0.7</option>
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226 <option value="0.75">0.75</option>
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227 <option value="0.8">0.8</option>
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228 </param>
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229 </when>
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230 <when value="NO">
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231 <param name="MISSINGFILTEREVAL" type="hidden" value= "FALSE" help="set TRUE if wish to evaluate. default is FALSE"/>
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232
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233 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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234
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235 <param name="MISSINGFILTERRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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236
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237 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0" />
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238
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239 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0" />
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240
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241 </when>
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242 </conditional>
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243
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244 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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245
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246 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
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247
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248 <param name="PCARESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
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249
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250 <param name="PCACOMP" type="select" label="2. Find number of Principle component" help="performs PCA and gives number of PC. Default is 3 ">
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251 <option value="3">3</option>
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252 <option value="4">4</option>
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253 <option value="5">5</option>
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254 <option value="6">6</option>
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255 <option value="7">7</option>
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256 <option value="8">8</option>
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257 <option value="9">9</option>
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258 <option value="10">10</option>
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259 </param>
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260
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261 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
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262
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263 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
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264
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265 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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266
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267 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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268
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269
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270 <conditional name="CON2">
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271 <param name="PARAMAETERS2" type="select" label="3. Customize parameters for data splitting" help="splits data in test and train set.">
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272 <option value="YES2">YES </option>
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273 <option value="NO2" selected="true">NO </option>
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274 </param>
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275 <when value="YES2">
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276 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
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277 <!--param name="SAAMPLING" type="select" label="3(i). Select Sampling Method" help="Defult is with No sampling. you may choose downsample or upsample" >
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278 <option value="garBage" selected="true">No Sampling</option>
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279 <option value="downsampling">downsample</option>
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280 <option value="upsampling">upsample</option>
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281 </param-->
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282 <param name="INITIALDATASPLITECHO" type="select" label="3(ii). Write Code in Document" help="set True if wish to print .default is False" >
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283 <option value="FALSE">false</option>
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284 <option value="TRUE">true</option>
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285 </param>
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286 <param name="INITIALDATASPLITRESULT" type="select" value="tex" label="3(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
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287 <option value="tex" selected="true">tex-result will written in file</option>
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288 <option value="hide">hide-result will not written in file</option>
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289 </param>
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290 <param name="PERCENT" type="select" label="3(iv) .Set Value at Which Data Will be Splitted in Train and Test Set" help="default is 0.8">
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291 <option value="0.8">0.8</option>
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292 <option value="0.75">0.75</option>
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293 <option value="0.6">0.6</option>
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294 <option value="0.5">0.5</option>
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295 </param>
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296 </when>
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297 <when value="NO2">
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298 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
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299
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300 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
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301
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302 <!--param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/-->
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303
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304 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
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305
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306 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
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307
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308 </when>
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309 </conditional>
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310
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311 <conditional name="CON3">
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312 <param name="PARAMAETERS3" type="select" label="4. Remove near zero variance" help="removes NZV from train and test set.">
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313 <option value="YES3">YES </option>
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314 <option value="NO3" selected="true">NO </option>
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315 </param>
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316 <when value="YES3">
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317
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318 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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319
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320
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321 <param name="NZVECHO" type="select" label="4(i). Write Code in Document" help="set True if wish to print .default is False">
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322 <option value="FALSE">false</option>
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323 <option value="TRUE">true</option>
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324 </param>
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325
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326 <param name="NZVRESULT" type="select" label="4(ii). Write Result in document" help="Set tex if wish to write result in output pdf file. default is tex">
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327 <option value="hide">hide-result will not written in file</option>
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328 <option value="tex" selected="true">tex-result will written in file</option>
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329 </param>
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330 </when>
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331 <when value="NO3">
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332 <param name="NZVEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
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333 <param name="NZVECHO" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
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334 <param name="NZVRESULT" type="hidden" value="hide" help="set TRUE if wish to evaluate."/>
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335 </when>
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336 </conditional>
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337
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338 <!--param name="NZVECHO" type="select" label="Write Code in Document" help="set True if wish to print .default is False">
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339 <option value="FALSE">false</option>
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340 <option value="TRUE">true</option>
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341 </param-->
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342
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343 <conditional name="CON4">
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344 <param name="PARAMAETERS4" type="select" label="5. Remove Correlated Values " help="removes correlated attributes from train and test set.">
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345 <option value="YES4">YES </option>
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346 <option value="NO4" selected="true">NO </option>
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347 </param>
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348 <when value="YES4">
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349 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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350 <param name="THRESHHOLDCOR" type="select" label="5(i). cutoff for correlated Value " help="set according to need .default is 0.75 means attributes have 75% or more correlation are ommited from the data">
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351 <option value="0.75">0.75</option>
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352 <option value="0.4">0.4</option>
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353 <option value="0.45">0.45</option>
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354 <option value="0.5">0.5</option>
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355 <option value="0.55">0.55</option>
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356 <option value="0.6">0.6</option>
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357 <option value="0.65">0.65</option>
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358 <option value="0.7">0.7</option>
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359 <option value="0.8">0.8</option>
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360 <option value="0.85">0.85</option>
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361 <option value="0.9">0.9</option>
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362 <option value="0.95">0.95</option>
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363 </param>
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364 <param name="CORRFILTERECHO" type="select" label="5(ii). Write Code in Document" help="set True if wish to print .default is False" >
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365 <option value="FALSE">false</option>
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366 <option value="TRUE">true</option>
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367 </param>
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368 <param name="CORRFILTERRESULT" type="select" label="5(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
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369 <option value="hide">hide-result will not written in file</option>
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370 <option value="tex" selected="true">tex-result will written in file</option>
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371 </param>
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372 </when>
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373 <when value="NO4">
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374 <param name="CORRFILTEREVAL" type="hidden" value="FALSE"/>
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375
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376 <param name="CORRFILTERRESULT" type="hidden" value="hide" />
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377
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378 <param name="CORRFILTERECHO" type="hidden" value="FALSE" />
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379
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380 <param name="THRESHHOLDCOR" type="hidden" value="0" />
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|
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381 </when>
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382 </conditional>
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383
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384 <conditional name="CON5">
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385 <param name="PARAMAETERS5" type="select" label="6. Perform Centering and Scaling of data" help="centering and scaling of train and test set.">
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386 <option value="YES5">YES </option>
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387 <option value="NO5" selected="true">NO </option>
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|
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388 </param>
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389
|
|
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390 <when value="YES5">
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391 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
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|
|
392 <param name="PREPROCECHO" type="select" label="6(i). Write Code in Document" help="set True if wish to write code in document .default is False" >
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|
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393 <option value="FALSE">false</option>
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394 <option value="TRUE">true</option>
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|
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395 </param>
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396 <param name="PREPROCRESULT" type="select" label="6(ii). Write Result in document " help="Set tex if wish to write result in output pdf file. default is tex">
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397 <option value="hide">hide-result will not written in file</option>
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398 <option value="tex" selected="true">tex-result will written in file</option>
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|
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399 </param>
|
|
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400 </when>
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401 <when value="NO5">
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|
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402 <param name="PREPROCEVAL" type="hidden" value="FALSE"/>
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403
|
|
|
404 <param name="PREPROCECHO" type="hidden" value="FALSE" />
|
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405
|
|
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406 <param name="PREPROCRESULT" type="hidden" value="hide" />
|
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407
|
|
|
408 </when>
|
|
|
409 </conditional>
|
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410
|
|
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411 <param name="SETUPWORKERSEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is False"/>
|
|
|
412 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
|
|
|
413 <param name="NUMWORKERS" type="select" label="7. Set Number of Processors" help ="default is 1">
|
|
|
414 <option value="1">1</option>
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|
415 <option value="2">2</option>
|
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416 <option value="4">4</option>
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417 <option value="6">6</option>
|
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418 <option value="8">8</option>
|
|
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419 <option value="16">16</option>
|
|
|
420 </param>
|
|
|
421 <param name="SETUPWORKERSRESULT" type="select" label="7(i). Write Result" help="Set tex if wish to write in output pdf file. default is hide">
|
|
|
422 <option value="tex">tex-result will written in file</option>
|
|
|
423 <option value="hide" selected="true">hide-result will not written in file</option>
|
|
|
424 </param>
|
|
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425
|
|
|
426 <conditional name="CON6">
|
|
|
427
|
|
|
428 <param name="PARAMAETERS6" type="select" label="7. custumize resampling parameters" help="resampling for cross validation">
|
|
|
429 <option value="YES6">YES </option>
|
|
|
430 <option value="NO6" selected="true">NO </option>
|
|
|
431 </param>
|
|
|
432 <when value="YES6">
|
|
|
433 <param name="SETUPRESAMPLINGECHO" type="select" label="7(i). write code for resampling" help="set True if wish to print .default is False">
|
|
|
434 <option value="FALSE">false</option>
|
|
|
435 <option value="TRUE">true</option>
|
|
|
436 </param>
|
|
|
437 <param name="SETUPRESAMPLINGRESULT" type="select" label="7(ii). Write Result in document " help="Set tex if wish to write in output pdf file. default is hide">
|
|
|
438 <option value="hide">hide-result will not written in file</option>
|
|
|
439 <option value="tex">tex-result will written in file</option>
|
|
|
440 </param>
|
|
|
441 <param name="RESAMPLENUMBER" type="select" label="7(iii). Set Number of times Resample" help="default is 10 ">
|
|
|
442 <option value="10">10</option>
|
|
|
443 <option value="5">5</option>
|
|
|
444 <option value="15">15</option>
|
|
|
445 <option value="20">20</option>
|
|
|
446 <option value="25">25</option>
|
|
|
447 </param>
|
|
|
448 <param name="RESAMPLENUMBERPERCENT" type="select" label="7(iv). Set Percent splitting of data for resampling" help="default is 0.75">
|
|
|
449 <option value="0.75">0.75</option>
|
|
|
450 <option value="0.4">0.4</option>
|
|
|
451 <option value="0.45">0.45</option>
|
|
|
452 <option value="0.5">0.5</option>
|
|
|
453 <option value="0.55">0.55</option>
|
|
|
454 <option value="0.6">0.6</option>
|
|
|
455 <option value="0.65">0.65</option>
|
|
|
456 <option value="0.7">0.7</option>
|
|
|
457 <option value="0.8">0.8</option>
|
|
|
458 </param>
|
|
|
459 </when>
|
|
|
460 <when value="NO6">
|
|
|
461 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
|
|
|
462
|
|
|
463 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
|
|
|
464
|
|
|
465 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
|
|
|
466
|
|
|
467 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
|
|
|
468
|
|
|
469 </when>
|
|
|
470 </conditional>
|
|
|
471 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
|
|
|
472
|
|
|
473 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
|
|
|
474
|
|
|
475 <param name="SETUPGRIDSIZE" type="select" label="8. Set Size of The Grid." help="default is 3 ">
|
|
|
476 <option value="3">3</option>
|
|
|
477 <option value="4">4</option>
|
|
|
478 <option value="5">5</option>
|
|
|
479 <option value="6">6</option>
|
|
|
480 <option value="7">7</option>
|
|
|
481 <option value="8">8</option>
|
|
|
482 <option value="9">9</option>
|
|
|
483 <option value="10">10</option>
|
|
|
484 <option value="11">11</option>
|
|
|
485 <option value="12">12</option>
|
|
|
486 <option value="13">13</option>
|
|
|
487 <option value="14">14</option>
|
|
|
488 <option value="15">15</option>
|
|
|
489 <option value="16">16</option>
|
|
|
490 <option value="17">17</option>
|
|
|
491 <option value="18">18</option>
|
|
|
492 <option value="19">19</option>
|
|
|
493 <option value="20">20</option>
|
|
|
494 </param>
|
|
|
495
|
|
|
496 <param name="FITMODELEVAL" type="boolean" checked="true" value="true" label="9. Build a Model and write result in document" help="default is TRUE"/>
|
|
|
497 <param name="FITMODELRESULT" type="hidden" value="tex" />
|
|
|
498 <param name="FITMODELECHO" type="select" label="9(i). Write Code for model building in Document" help="set True if wish to write code in document .default is False" >
|
|
|
499 <option value="FALSE">false</option>
|
|
|
500 <option value="TRUE">true</option>
|
|
|
501 </param>
|
|
|
502 <param name="MODELDESCRECHO" type="select" label="9(ii). Write code for Model Description " help="set True if wish to print .default is False" >
|
|
|
503 <option value="FALSE">false</option>
|
|
|
504 <option value="TRUE">true</option>
|
|
|
505 </param>
|
|
|
506 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
|
|
|
507
|
|
|
508 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
|
|
|
509
|
|
|
510 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
|
|
|
511
|
|
|
512 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
|
|
|
513
|
|
|
514 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
|
|
|
515
|
|
|
516 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
|
|
|
517
|
|
|
518 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
|
|
|
519
|
|
|
520 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
|
|
|
521
|
|
|
522 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
|
|
|
523
|
|
|
524 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
|
|
|
525
|
|
|
526 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
|
|
|
527
|
|
|
528 <!--param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
|
|
|
529
|
|
|
530 <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" /-->
|
|
|
531
|
|
|
532 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
|
|
|
533
|
|
|
534 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
|
|
|
535
|
|
|
536 </when>
|
|
|
537 </conditional>
|
|
|
538 </inputs>
|
|
|
539
|
|
|
540 <outputs>
|
|
|
541 <data format="RData" label="$METHOD regression Model " name="model" />
|
|
|
542 <data format="pdf" label="$METHOD regression Document" name="document" />
|
|
|
543 </outputs>
|
|
|
544 <help>
|
|
|
545
|
|
|
546 .. class:: infomark
|
|
|
547
|
|
|
548
|
|
|
549
|
|
|
550 **Instruction**
|
|
|
551
|
|
|
552 ----------
|
|
|
553
|
|
|
554 Users may change any parameter as their requirement. For normal practice
|
|
|
555
|
|
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556 user required to provide only input csv file with response variable (Numeric) as last column and method for model building.
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557
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558 More details are given in user manual.Please click here
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559
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560
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561
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562 </help>
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563
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564
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565
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566 </tool>
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