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comparison caret_regression/tool2/tool2reg.xml @ 0:68300206e90d draft default tip

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date Thu, 05 Nov 2015 02:41:30 -0500
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1 <tool id="cghyjaqxpsssp2" name="Create script from the template file for regression ">
2 <description>
3 used to create script file from user given input to build a model
4 </description>
5 <requirements>
6 <requirement type="set_environment">R_ROOT_DIR</requirement>
7 <requirement type="package" version="3.2.0">R</requirement>
8 <requirement type="package" version="1.0.0">caret-tools</requirement>
9 </requirements>
10 <command interpreter="python">
11 #if $OPTION11.PARAMAETERS == "Advance"
12 caret_regression/tool2/modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.CON1.MISSINGFILTEREVAL --missingfilterecho $OPTION11.CON1.MISSINGFILTERECHO --missingfilterresult $OPTION11.CON1.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.CON1.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.CON1.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.CON2.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.CON2.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.CON2.INITIALDATASPLITRESULT --percent $OPTION11.CON2.PERCENT --nzveval $OPTION11.CON3.NZVEVAL --nzvresult $OPTION11.CON3.NZVRESULT --nzvecho $OPTION11.CON3.NZVECHO --corrfiltereval $OPTION11.CON4.CORRFILTEREVAL --corrfilterresult $OPTION11.CON4.CORRFILTERRESULT --corrfilterecho $OPTION11.CON4.CORRFILTERECHO --threshholdcor $OPTION11.CON4.THRESHHOLDCOR --preproceval $OPTION11.CON5.PREPROCEVAL --preprocecho $OPTION11.CON5.PREPROCECHO --preprocresult $OPTION11.CON5.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.CON6.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.CON6.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.CON6.RESAMPLENUMBER --resamplenumberpercent $OPTION11.CON6.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document;
13 #end if
14 #if $OPTION11.PARAMAETERS == "basic"
15 caret_regression/tool2/modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.MISSINGFILTEREVAL --missingfilterecho $OPTION11.MISSINGFILTERECHO --missingfilterresult $OPTION11.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.INITIALDATASPLITRESULT --percent $OPTION11.PERCENT --nzveval $OPTION11.NZVEVAL --nzvresult $OPTION11.NZVRESULT --nzvecho $OPTION11.NZVECHO --corrfiltereval $OPTION11.CORRFILTEREVAL --corrfilterresult $OPTION11.CORRFILTERRESULT --corrfilterecho $OPTION11.CORRFILTERECHO --threshholdcor $OPTION11.THRESHHOLDCOR --preproceval $OPTION11.PREPROCEVAL --preprocecho $OPTION11.PREPROCECHO --preprocresult $OPTION11.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.RESAMPLENUMBER --resamplenumberpercent $OPTION11.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document;
16 #end if
17 </command>
18 <inputs>
19 <param name="METHOD" type="select" label="Select Method to Train Data" >
20 <option value="gbm">Generalized Boosting</option>
21 <option value="treebag">treebag-Bagged CART</option>
22 <option value="earth">earth-MARS method</option>
23 <option value="Boruta">Boruta-Random forest with feature selection</option>
24 <option value="bstLs">Boosted Linear Model</option>
25 <option value="glm">Generalized Linear Model</option>
26 <option value="pls" selected="true">Partial Least Square</option>
27 <option value="svmRadial">SVM radial basis function</option>
28 <option value="svmLinear">SVM Linear function</option>
29 <option value="rpart">rpart-CART</option>
30 <option value="rf">Random Forest</option>
31 <option value="knn">k-Nearest Neighbors</option>
32 <!--option value="bagFDA">bag-Fourier Discriminant Analysis</option>
33 <option value="gbm">Generalized Boosting</option>
34 <option value="blackboost">black-boost- Boosting Method</option>
35 <option value="earth">Earth-MARS based method</option>
36 <option value="rf">Random Forest</option>
37 <option value="RRF">RRFglobal -Variant of Random Forest</option>
38 <option value="svmRadial">SVM-Radial</option>
39 <option value="svmPoly">SVM-Polynomial</option>
40 <option value="ada">ada-boost</option>
41 <option value="glm">Generalised linear model </option>
42 <option value="treebag">tree based bagging method</option>
43 <option value="nb">Naive Bayes</option>
44 <option value="knn">K-nearest neighbour</option-->
45 </param>
46 <param name="RDATA" format="data" type="data" label="Select File Containing Training Data" help="RData format" />
47
48
49 <conditional name="OPTION11">
50 <param name="PARAMAETERS" type="select">
51 <option value="basic" selected="TRUE" >Use optimized parameters </option>
52 <option value="Advance"> Customized parameters </option>
53 </param>
54
55 <when value="basic">
56
57 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
58
59 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
60 <param name="GETDATAINFORESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
61
62 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
63
64 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
65
66 <param name="MISSINGFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
67
68 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0.2" help="For column wise default is 0.2"/>
69
70 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0.2" help="For row wise default is 0.2"/>
71
72 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
73
74 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
75
76 <param name="PCARESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
77
78 <param name="PCACOMP" type="hidden" value="3" help="set according to need. Default is 3"/>
79
80 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
81
82 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
83
84 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
85
86 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
87
88 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
89
90 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
91
92
93 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
94
95 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
96
97 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
98
99 <param name="NZVRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
100
101 <param name="NZVECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
102
103 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
104
105 <param name="CORRFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
106
107 <param name="CORRFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
108
109 <param name="THRESHHOLDCOR" type="hidden" value="0.75" help="set according to need .default is 0.75"/>
110
111 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
112
113 <param name="PREPROCECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
114
115 <param name="PREPROCRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
116
117 <param name="SETUPWORKERSEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. default is False"/>
118
119 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
120
121 <param name="SETUPWORKERSRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
122
123 <param name="NUMWORKERS" type="hidden" value="1" help ="default is 1"/>
124
125 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
126
127 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
128
129 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
130
131 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
132
133 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
134
135 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
136
137 <param name="SETUPGRIDSIZE" type="hidden" value="3" help="default is 3 "/>
138
139 <param name="FITMODELEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
140
141 <param name="FITMODELRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
142
143 <param name="FITMODELECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
144
145 <param name="MODELDESCRECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
146
147 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
148
149 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
150
151 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
152
153 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
154
155 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
156
157 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
158
159 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
160
161 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
162
163 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
164
165 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
166
167 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
168
169 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
170
171 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
172
173 </when>
174
175
176 <when value="Advance">
177 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
178 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
179 <param name="GETDATAINFORESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
180
181 <conditional name="CON1">
182 <param name="PARAMAETERS1" type="select" label="1. Remove Missing Values from the input data">
183 <option value="YES">YES </option>
184 <option value="NO" selected="true">NO </option>
185 </param>
186
187 <when value="YES">
188 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
189 <param name="MISSINGFILTERECHO" type="select" label="1(i). Write Code in Document" help="set True if wish to print .default is False" >
190 <option value="FALSE" selected="true">false</option>
191 <option value="TRUE">true</option>
192 </param>
193 <param name="MISSINGFILTERRESULT" type="select" label="1(ii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
194 <option value="hide">hide-result will not written in file</option>
195 <option value="tex" selected="true">tex-result will written in file</option>
196 </param>
197 <param name="MISSINGFILTERTHRESHC" type="select" label="1(iii). Set Cutoff Value for Missing Data value Columwise" help="For column wise default is 0.1 means column which has missing value more than 10% will be removed ">
198 <option value="0.1">0.1</option>
199 <option value="0.2">0.2</option>
200 <option value="0.25">0.25</option>
201 <option value="0.3">0.3</option>
202 <option value="0.35">0.35</option>
203 <option value="0.4">0.4</option>
204 <option value="0.45">0.45</option>
205 <option value="0.5">0.5</option>
206 <option value="0.55">0.55</option>
207 <option value="0.6">0.6</option>
208 <option value="0.65">0.65</option>
209 <option value="0.7">0.7</option>
210 <option value="0.75">0.75</option>
211 <option value="0.8">0.8</option>
212 </param>
213 <param name="MISSINGFILTERTHRESHR" type="select" label="1(iv). Set Cutoff Value for Missing Data Value Rowwise " help="For row wise default is 0.1 means row having more than 10% missing values will be removed">
214 <option value="0.1">0.1</option>
215 <option value="0.2">0.2</option>
216 <option value="0.25">0.25</option>
217 <option value="0.3">0.3</option>
218 <option value="0.35">0.35</option>
219 <option value="0.4">0.4</option>
220 <option value="0.45">0.45</option>
221 <option value="0.5">0.5</option>
222 <option value="0.55">0.55</option>
223 <option value="0.6">0.6</option>
224 <option value="0.65">0.65</option>
225 <option value="0.7">0.7</option>
226 <option value="0.75">0.75</option>
227 <option value="0.8">0.8</option>
228 </param>
229 </when>
230 <when value="NO">
231 <param name="MISSINGFILTEREVAL" type="hidden" value= "FALSE" help="set TRUE if wish to evaluate. default is FALSE"/>
232
233 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
234
235 <param name="MISSINGFILTERRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
236
237 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0" />
238
239 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0" />
240
241 </when>
242 </conditional>
243
244 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
245
246 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
247
248 <param name="PCARESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
249
250 <param name="PCACOMP" type="select" label="2. Find number of Principle component" help="performs PCA and gives number of PC. Default is 3 ">
251 <option value="3">3</option>
252 <option value="4">4</option>
253 <option value="5">5</option>
254 <option value="6">6</option>
255 <option value="7">7</option>
256 <option value="8">8</option>
257 <option value="9">9</option>
258 <option value="10">10</option>
259 </param>
260
261 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
262
263 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
264
265 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
266
267 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
268
269
270 <conditional name="CON2">
271 <param name="PARAMAETERS2" type="select" label="3. Customize parameters for data splitting" help="splits data in test and train set.">
272 <option value="YES2">YES </option>
273 <option value="NO2" selected="true">NO </option>
274 </param>
275 <when value="YES2">
276 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
277 <!--param name="SAAMPLING" type="select" label="3(i). Select Sampling Method" help="Defult is with No sampling. you may choose downsample or upsample" >
278 <option value="garBage" selected="true">No Sampling</option>
279 <option value="downsampling">downsample</option>
280 <option value="upsampling">upsample</option>
281 </param-->
282 <param name="INITIALDATASPLITECHO" type="select" label="3(ii). Write Code in Document" help="set True if wish to print .default is False" >
283 <option value="FALSE">false</option>
284 <option value="TRUE">true</option>
285 </param>
286 <param name="INITIALDATASPLITRESULT" type="select" value="tex" label="3(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
287 <option value="tex" selected="true">tex-result will written in file</option>
288 <option value="hide">hide-result will not written in file</option>
289 </param>
290 <param name="PERCENT" type="select" label="3(iv) .Set Value at Which Data Will be Splitted in Train and Test Set" help="default is 0.8">
291 <option value="0.8">0.8</option>
292 <option value="0.75">0.75</option>
293 <option value="0.6">0.6</option>
294 <option value="0.5">0.5</option>
295 </param>
296 </when>
297 <when value="NO2">
298 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
299
300 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
301
302 <!--param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/-->
303
304 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
305
306 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
307
308 </when>
309 </conditional>
310
311 <conditional name="CON3">
312 <param name="PARAMAETERS3" type="select" label="4. Remove near zero variance" help="removes NZV from train and test set.">
313 <option value="YES3">YES </option>
314 <option value="NO3" selected="true">NO </option>
315 </param>
316 <when value="YES3">
317
318 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
319
320
321 <param name="NZVECHO" type="select" label="4(i). Write Code in Document" help="set True if wish to print .default is False">
322 <option value="FALSE">false</option>
323 <option value="TRUE">true</option>
324 </param>
325
326 <param name="NZVRESULT" type="select" label="4(ii). Write Result in document" help="Set tex if wish to write result in output pdf file. default is tex">
327 <option value="hide">hide-result will not written in file</option>
328 <option value="tex" selected="true">tex-result will written in file</option>
329 </param>
330 </when>
331 <when value="NO3">
332 <param name="NZVEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
333 <param name="NZVECHO" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
334 <param name="NZVRESULT" type="hidden" value="hide" help="set TRUE if wish to evaluate."/>
335 </when>
336 </conditional>
337
338 <!--param name="NZVECHO" type="select" label="Write Code in Document" help="set True if wish to print .default is False">
339 <option value="FALSE">false</option>
340 <option value="TRUE">true</option>
341 </param-->
342
343 <conditional name="CON4">
344 <param name="PARAMAETERS4" type="select" label="5. Remove Correlated Values " help="removes correlated attributes from train and test set.">
345 <option value="YES4">YES </option>
346 <option value="NO4" selected="true">NO </option>
347 </param>
348 <when value="YES4">
349 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
350 <param name="THRESHHOLDCOR" type="select" label="5(i). cutoff for correlated Value " help="set according to need .default is 0.75 means attributes have 75% or more correlation are ommited from the data">
351 <option value="0.75">0.75</option>
352 <option value="0.4">0.4</option>
353 <option value="0.45">0.45</option>
354 <option value="0.5">0.5</option>
355 <option value="0.55">0.55</option>
356 <option value="0.6">0.6</option>
357 <option value="0.65">0.65</option>
358 <option value="0.7">0.7</option>
359 <option value="0.8">0.8</option>
360 <option value="0.85">0.85</option>
361 <option value="0.9">0.9</option>
362 <option value="0.95">0.95</option>
363 </param>
364 <param name="CORRFILTERECHO" type="select" label="5(ii). Write Code in Document" help="set True if wish to print .default is False" >
365 <option value="FALSE">false</option>
366 <option value="TRUE">true</option>
367 </param>
368 <param name="CORRFILTERRESULT" type="select" label="5(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
369 <option value="hide">hide-result will not written in file</option>
370 <option value="tex" selected="true">tex-result will written in file</option>
371 </param>
372 </when>
373 <when value="NO4">
374 <param name="CORRFILTEREVAL" type="hidden" value="FALSE"/>
375
376 <param name="CORRFILTERRESULT" type="hidden" value="hide" />
377
378 <param name="CORRFILTERECHO" type="hidden" value="FALSE" />
379
380 <param name="THRESHHOLDCOR" type="hidden" value="0" />
381 </when>
382 </conditional>
383
384 <conditional name="CON5">
385 <param name="PARAMAETERS5" type="select" label="6. Perform Centering and Scaling of data" help="centering and scaling of train and test set.">
386 <option value="YES5">YES </option>
387 <option value="NO5" selected="true">NO </option>
388 </param>
389
390 <when value="YES5">
391 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
392 <param name="PREPROCECHO" type="select" label="6(i). Write Code in Document" help="set True if wish to write code in document .default is False" >
393 <option value="FALSE">false</option>
394 <option value="TRUE">true</option>
395 </param>
396 <param name="PREPROCRESULT" type="select" label="6(ii). Write Result in document " help="Set tex if wish to write result in output pdf file. default is tex">
397 <option value="hide">hide-result will not written in file</option>
398 <option value="tex" selected="true">tex-result will written in file</option>
399 </param>
400 </when>
401 <when value="NO5">
402 <param name="PREPROCEVAL" type="hidden" value="FALSE"/>
403
404 <param name="PREPROCECHO" type="hidden" value="FALSE" />
405
406 <param name="PREPROCRESULT" type="hidden" value="hide" />
407
408 </when>
409 </conditional>
410
411 <param name="SETUPWORKERSEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is False"/>
412 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
413 <param name="NUMWORKERS" type="select" label="7. Set Number of Processors" help ="default is 1">
414 <option value="1">1</option>
415 <option value="2">2</option>
416 <option value="4">4</option>
417 <option value="6">6</option>
418 <option value="8">8</option>
419 <option value="16">16</option>
420 </param>
421 <param name="SETUPWORKERSRESULT" type="select" label="7(i). Write Result" help="Set tex if wish to write in output pdf file. default is hide">
422 <option value="tex">tex-result will written in file</option>
423 <option value="hide" selected="true">hide-result will not written in file</option>
424 </param>
425
426 <conditional name="CON6">
427
428 <param name="PARAMAETERS6" type="select" label="7. custumize resampling parameters" help="resampling for cross validation">
429 <option value="YES6">YES </option>
430 <option value="NO6" selected="true">NO </option>
431 </param>
432 <when value="YES6">
433 <param name="SETUPRESAMPLINGECHO" type="select" label="7(i). write code for resampling" help="set True if wish to print .default is False">
434 <option value="FALSE">false</option>
435 <option value="TRUE">true</option>
436 </param>
437 <param name="SETUPRESAMPLINGRESULT" type="select" label="7(ii). Write Result in document " help="Set tex if wish to write in output pdf file. default is hide">
438 <option value="hide">hide-result will not written in file</option>
439 <option value="tex">tex-result will written in file</option>
440 </param>
441 <param name="RESAMPLENUMBER" type="select" label="7(iii). Set Number of times Resample" help="default is 10 ">
442 <option value="10">10</option>
443 <option value="5">5</option>
444 <option value="15">15</option>
445 <option value="20">20</option>
446 <option value="25">25</option>
447 </param>
448 <param name="RESAMPLENUMBERPERCENT" type="select" label="7(iv). Set Percent splitting of data for resampling" help="default is 0.75">
449 <option value="0.75">0.75</option>
450 <option value="0.4">0.4</option>
451 <option value="0.45">0.45</option>
452 <option value="0.5">0.5</option>
453 <option value="0.55">0.55</option>
454 <option value="0.6">0.6</option>
455 <option value="0.65">0.65</option>
456 <option value="0.7">0.7</option>
457 <option value="0.8">0.8</option>
458 </param>
459 </when>
460 <when value="NO6">
461 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
462
463 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
464
465 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
466
467 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
468
469 </when>
470 </conditional>
471 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
472
473 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
474
475 <param name="SETUPGRIDSIZE" type="select" label="8. Set Size of The Grid." help="default is 3 ">
476 <option value="3">3</option>
477 <option value="4">4</option>
478 <option value="5">5</option>
479 <option value="6">6</option>
480 <option value="7">7</option>
481 <option value="8">8</option>
482 <option value="9">9</option>
483 <option value="10">10</option>
484 <option value="11">11</option>
485 <option value="12">12</option>
486 <option value="13">13</option>
487 <option value="14">14</option>
488 <option value="15">15</option>
489 <option value="16">16</option>
490 <option value="17">17</option>
491 <option value="18">18</option>
492 <option value="19">19</option>
493 <option value="20">20</option>
494 </param>
495
496 <param name="FITMODELEVAL" type="boolean" checked="true" value="true" label="9. Build a Model and write result in document" help="default is TRUE"/>
497 <param name="FITMODELRESULT" type="hidden" value="tex" />
498 <param name="FITMODELECHO" type="select" label="9(i). Write Code for model building in Document" help="set True if wish to write code in document .default is False" >
499 <option value="FALSE">false</option>
500 <option value="TRUE">true</option>
501 </param>
502 <param name="MODELDESCRECHO" type="select" label="9(ii). Write code for Model Description " help="set True if wish to print .default is False" >
503 <option value="FALSE">false</option>
504 <option value="TRUE">true</option>
505 </param>
506 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
507
508 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
509
510 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
511
512 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
513
514 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
515
516 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
517
518 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
519
520 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
521
522 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
523
524 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
525
526 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
527
528 <!--param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
529
530 <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" /-->
531
532 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
533
534 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
535
536 </when>
537 </conditional>
538 </inputs>
539
540 <outputs>
541 <data format="RData" label="$METHOD regression Model " name="model" />
542 <data format="pdf" label="$METHOD regression Document" name="document" />
543 </outputs>
544 <help>
545
546 .. class:: infomark
547
548
549
550 **Instruction**
551
552 ----------
553
554 Users may change any parameter as their requirement. For normal practice
555
556 user required to provide only input csv file with response variable (Numeric) as last column and method for model building.
557
558 More details are given in user manual.Please click here
559
560
561
562 </help>
563
564
565
566 </tool>