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comparison caret_future/tool2/tool2.xml.2 @ 0:68300206e90d draft default tip

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author deepakjadmin
date Thu, 05 Nov 2015 02:41:30 -0500
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1 <tool id="cddddxpsssp2" name="Create script from the template file ">
2 <description>
3 used to create script file from user given input to build a model
4 </description>
5 <command interpreter="python">modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.MISSINGFILTEREVAL --missingfilterecho $OPTION11.MISSINGFILTERECHO --missingfilterresult $OPTION11.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.INITIALDATASPLITRESULT --saampling $OPTION11.SAAMPLING --percent $OPTION11.PERCENT --nzveval $OPTION11.NZVEVAL --nzvresult $OPTION11.NZVRESULT --nzvecho $OPTION11.NZVECHO --corrfiltereval $OPTION11.CORRFILTEREVAL --corrfilterresult $OPTION11.CORRFILTERRESULT --corrfilterecho $OPTION11.CORRFILTERECHO --threshholdcor $OPTION11.THRESHHOLDCOR --preproceval $OPTION11.PREPROCEVAL --preprocecho $OPTION11.PREPROCECHO --preprocresult $OPTION11.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.SETUPRESAMPLINGRESULT --resamplenumber $OPTION11.RESAMPLENUMBER --resamplenumberpercent $OPTION11.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --classprobstexresult1 $OPTION11.CLASSPROBSTEXRESULT1 --classprobstexecho1 $OPTION11.CLASSPROBSTEXECHO1 --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --outputmodel $model --outputresultpdf $document </command>
6 <inputs>
7 <param name="METHOD" type="select" label="Select Method to Train Data" >
8 <option value="pls">Partial Least Square</option>
9 <option value="bagFDA">bag-Fourier Discriminant Analysis</option>
10 <option value="blackboost">black-boost- Boosting Method</option>
11 <option value="earth">Earth-MARS based method</option>
12 <option value="rf">Random Forest</option>
13 <option value="RRF">RRFglobal -Variant of Random Forest</option>
14 <option value="svmRadial">SVM-Radial</option>
15 <option value="svmPoly">SVM-Polynomial</option>
16 <option value="ada">ada-boost</option>
17 <option value="glm">Generalised linear model </option>
18 <option value="treebag">tree based bagging method</option>
19 <option value="nb">Naive Bayes</option>
20 <option value="knn">K-nearest neighbour</option>
21 </param>
22 <param name="RDATA" format="RData" type="data" label="Select File Containing Training Data" help="RData format" />
23
24
25 <conditional name="OPTION11">
26 <param name="PARAMAETERS" type="select">
27 <option value="basic" selected="TRUE" >Use optimized parameters </option>
28 <option value="Advance"> Customized parameters </option>
29 </param>
30
31 <when value="basic">
32
33 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
34
35 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
36 <param name="GETDATAINFORESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
37
38 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
39
40 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
41
42 <param name="MISSINGFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
43
44 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0.2" help="For column wise default is 0.2"/>
45
46 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0.2" help="For row wise default is 0.2"/>
47
48 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
49
50 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
51
52 <param name="PCARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
53
54 <param name="PCACOMP" type="hidden" value="3" help="set according to need. Default is 3"/>
55
56 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
57
58 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
59
60 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
61
62 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
63
64 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
65
66 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
67
68 <param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/>
69
70 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
71
72 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
73
74 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
75
76 <param name="NZVRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
77
78 <param name="NZVECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
79
80 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
81
82 <param name="CORRFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
83
84 <param name="CORRFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
85
86 <param name="THRESHHOLDCOR" type="hidden" value="0.75" help="set according to need .default is 0.75"/>
87
88 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
89
90 <param name="PREPROCECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
91
92 <param name="PREPROCRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
93
94 <param name="SETUPWORKERSEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. default is False"/>
95
96 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
97
98 <param name="SETUPWORKERSRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
99
100 <param name="NUMWORKERS" type="hidden" value="1" help ="default is 1"/>
101
102 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
103
104 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
105
106 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
107
108 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
109
110 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
111
112 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
113
114 <param name="SETUPGRIDSIZE" type="hidden" value="3" help="default is 3 "/>
115
116 <param name="FITMODELEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
117
118 <param name="FITMODELRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
119
120 <param name="FITMODELECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
121
122 <param name="MODELDESCRECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
123
124 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
125
126 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
127
128 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
129
130 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
131
132 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
133
134 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
135
136 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
137
138 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
139
140 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
141
142 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
143
144 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
145
146 <param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
147
148 <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
149
150 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
151
152 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
153
154 </when>
155
156
157 <when value="Advance">
158 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
159 <param name="GETDATAINFOECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
160 <param name="GETDATAINFORESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
161
162 <conditional name="CON1">
163 <param name="PARAMAETERS1" type="select" label="1. Remove Missing Values from the input data">
164 <option value="YES">YES </option>
165 <option value="NO" selected="true">NO </option>
166 </param>
167
168 <when value="YES">
169 <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
170 <param name="MISSINGFILTERECHO" type="select" label="1(i). Write Code in Document" help="set True if wish to print .default is False" >
171 <option value="FALSE" selected="true">false</option>
172 <option value="TRUE">true</option>
173 </param>
174 <param name="MISSINGFILTERRESULT" type="select" label="1(ii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
175 <option value="hide">hide-result will not written in file</option>
176 <option value="tex" selected="true">tex-result will written in file</option>
177 </param>
178 <param name="MISSINGFILTERTHRESHC" type="select" label="1(iii). Set Cutoff Value for Missing Data value Columwise" help="For column wise default is 0.1 means column which has missing value more than 10% will be removed ">
179 <option value="0.1">0.1</option>
180 <option value="0.2">0.2</option>
181 <option value="0.25">0.25</option>
182 <option value="0.3">0.3</option>
183 <option value="0.35">0.35</option>
184 <option value="0.4">0.4</option>
185 <option value="0.45">0.45</option>
186 <option value="0.5">0.5</option>
187 <option value="0.55">0.55</option>
188 <option value="0.6">0.6</option>
189 <option value="0.65">0.65</option>
190 <option value="0.7">0.7</option>
191 <option value="0.75">0.75</option>
192 <option value="0.8">0.8</option>
193 </param>
194 <param name="MISSINGFILTERTHRESHR" type="select" label="1(iv). Set Cutoff Value for Missing Data Value Rowwise " help="For row wise default is 0.1 means row having more than 10% missing values will be removed">
195 <option value="0.1">0.1</option>
196 <option value="0.2">0.2</option>
197 <option value="0.25">0.25</option>
198 <option value="0.3">0.3</option>
199 <option value="0.35">0.35</option>
200 <option value="0.4">0.4</option>
201 <option value="0.45">0.45</option>
202 <option value="0.5">0.5</option>
203 <option value="0.55">0.55</option>
204 <option value="0.6">0.6</option>
205 <option value="0.65">0.65</option>
206 <option value="0.7">0.7</option>
207 <option value="0.75">0.75</option>
208 <option value="0.8">0.8</option>
209 </param>
210 </when>
211 <when value="NO">
212 <param name="MISSINGFILTEREVAL" type="hidden" value= "FALSE" help="set TRUE if wish to evaluate. default is FALSE"/>
213
214 <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
215
216 <param name="MISSINGFILTERRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
217
218 <param name="MISSINGFILTERTHRESHC" type="hidden" value="0" />
219
220 <param name="MISSINGFILTERTHRESHR" type="hidden" value="0" />
221
222 </when>
223 </conditional>
224
225 <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
226
227 <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
228
229 <param name="PCARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
230
231 <param name="PCACOMP" type="select" label="2. Find number of Principle component" help="performs PCA and gives number of PC. Default is 3 ">
232 <option value="3">3</option>
233 <option value="4">4</option>
234 <option value="5">5</option>
235 <option value="6">6</option>
236 <option value="7">7</option>
237 <option value="8">8</option>
238 <option value="9">9</option>
239 <option value="10">10</option>
240 </param>
241
242 <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
243
244 <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
245
246 <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
247
248 <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
249
250
251 <conditional name="CON2">
252 <param name="PARAMAETERS2" type="select" label="3. Customize parameters for data splitting" help="splits data in test and train set.">
253 <option value="YES2">YES </option>
254 <option value="NO2" selected="true">NO </option>
255 </param>
256 <when value="YES2">
257 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
258 <param name="SAAMPLING" type="select" label="3(i). Select Sampling Method" help="Defult is with No sampling. you may choose downsample or upsample" >
259 <option value="garBage" selected="true">No Sampling</option>
260 <option value="downsampling">downsample</option>
261 <option value="upsampling">upsample</option>
262 </param>
263 <param name="INITIALDATASPLITECHO" type="select" label="3(ii). Write Code in Document" help="set True if wish to print .default is False" >
264 <option value="FALSE">false</option>
265 <option value="TRUE">true</option>
266 </param>
267 <param name="INITIALDATASPLITRESULT" type="select" value="tex" label="3(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
268 <option value="tex" selected="true">tex-result will written in file</option>
269 <option value="hide">hide-result will not written in file</option>
270 </param>
271 <param name="PERCENT" type="select" label="3(iv) .Set Value at Which Data Will be Splitted in Train and Test Set" help="default is 0.8">
272 <option value="0.8">0.8</option>
273 <option value="0.75">0.75</option>
274 <option value="0.6">0.6</option>
275 <option value="0.5">0.5</option>
276 </param>
277 </when>
278 <when value="NO2">
279 <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
280
281 <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
282
283 <param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/>
284
285 <param name="INITIALDATASPLITRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
286
287 <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
288
289 </when>
290 </conditional>
291
292 <conditional name="CON3">
293 <param name="PARAMAETERS3" type="select" label="4. Remove near zero variance" help="removes NZV from train and test set.">
294 <option value="YES3">YES </option>
295 <option value="NO3" selected="true">NO </option>
296 </param>
297 <when value="YES3">
298
299 <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
300
301
302 <param name="NZVECHO" type="select" label="4(i). Write Code in Document" help="set True if wish to print .default is False">
303 <option value="FALSE">false</option>
304 <option value="TRUE">true</option>
305 </param>
306
307 <param name="NZVRESULT" type="select" label="4(ii). Write Result in document" help="Set tex if wish to write result in output pdf file. default is tex">
308 <option value="hide">hide-result will not written in file</option>
309 <option value="tex" selected="true">tex-result will written in file</option>
310 </param>
311 </when>
312 <when value="NO3">
313 <param name="NZVEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
314 <param name="NZVECHO" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
315 <param name="NZVRESULT" type="hidden" value="hide" help="set TRUE if wish to evaluate."/>
316 </when>
317 </conditional>
318
319 <!--param name="NZVECHO" type="select" label="Write Code in Document" help="set True if wish to print .default is False">
320 <option value="FALSE">false</option>
321 <option value="TRUE">true</option>
322 </param-->
323
324 <conditional name="CON4">
325 <param name="PARAMAETERS4" type="select" label="5. Remove Correlated Values " help="removes correlated attributes from train and test set.">
326 <option value="YES4">YES </option>
327 <option value="NO4" selected="true">NO </option>
328 </param>
329 <when value="YES4">
330 <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
331 <param name="THRESHHOLDCOR" type="select" label="5(i). cutoff for correlated Value " help="set according to need .default is 0.75 means attributes have 75% or more correlation are ommited from the data">
332 <option value="0.75">0.75</option>
333 <option value="0.4">0.4</option>
334 <option value="0.45">0.45</option>
335 <option value="0.5">0.5</option>
336 <option value="0.55">0.55</option>
337 <option value="0.6">0.6</option>
338 <option value="0.65">0.65</option>
339 <option value="0.7">0.7</option>
340 <option value="0.8">0.8</option>
341 <option value="0.85">0.85</option>
342 <option value="0.9">0.9</option>
343 <option value="0.95">0.95</option>
344 </param>
345 <param name="CORRFILTERECHO" type="select" label="5(ii). Write Code in Document" help="set True if wish to print .default is False" >
346 <option value="FALSE">false</option>
347 <option value="TRUE">true</option>
348 </param>
349 <param name="CORRFILTERRESULT" type="select" label="5(iii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
350 <option value="hide">hide-result will not written in file</option>
351 <option value="tex" selected="true">tex-result will written in file</option>
352 </param>
353 </when>
354 <when value="NO4">
355 <param name="CORRFILTEREVAL" type="hidden" value="FALSE"/>
356
357 <param name="CORRFILTERRESULT" type="hidden" value="hide" />
358
359 <param name="CORRFILTERECHO" type="hidden" value="FALSE" />
360
361 <param name="THRESHHOLDCOR" type="hidden" value="0" />
362 </when>
363 </conditional>
364
365 <conditional name="CON5">
366 <param name="PARAMAETERS5" type="select" label="6. Perform Centering and Scaling of data" help="centering and scaling of train and test set.">
367 <option value="YES5">YES </option>
368 <option value="NO5" selected="true">NO </option>
369 </param>
370
371 <when value="YES5">
372 <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
373 <param name="PREPROCECHO" type="select" label="6(i). Write Code in Document" help="set True if wish to write code in document .default is False" >
374 <option value="FALSE">false</option>
375 <option value="TRUE">true</option>
376 </param>
377 <param name="PREPROCRESULT" type="select" label="6(ii). Write Result in document " help="Set tex if wish to write result in output pdf file. default is tex">
378 <option value="hide">hide-result will not written in file</option>
379 <option value="tex" selected="true">tex-result will written in file</option>
380 </param>
381 </when>
382 <when value="NO5">
383 <param name="PREPROCEVAL" type="hidden" value="FALSE"/>
384
385 <param name="PREPROCECHO" type="hidden" value="FALSE" />
386
387 <param name="PREPROCRESULT" type="hidden" value="hide" />
388
389 </when>
390 </conditional>
391
392 <param name="SETUPWORKERSEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is False"/>
393 <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
394 <param name="NUMWORKERS" type="select" label="7. Set Number of Processors" help ="default is 1">
395 <option value="1">1</option>
396 <option value="2">2</option>
397 <option value="4">4</option>
398 <option value="6">6</option>
399 <option value="8">8</option>
400 <option value="16">16</option>
401 </param>
402 <param name="SETUPWORKERSRESULT" type="select" label="7(i). Write Result" help="Set tex if wish to write in output pdf file. default is hide">
403 <option value="tex">tex-result will written in file</option>
404 <option value="hide" selected="true">hide-result will not written in file</option>
405 </param>
406
407 <conditional name="CON6">
408
409 <param name="PARAMAETERS6" type="select" label="7. custumize resampling parameters" help="resampling for cross validation">
410 <option value="YES6">YES </option>
411 <option value="NO6" selected="true">NO </option>
412 </param>
413 <when value="YES6">
414 <param name="SETUPRESAMPLINGECHO" type="select" label="7(i). write code for resampling" help="set True if wish to print .default is False">
415 <option value="FALSE">false</option>
416 <option value="TRUE">true</option>
417 </param>
418 <param name="SETUPRESAMPLINGRESULT" type="select" label="7(ii). Write Result in document " help="Set tex if wish to write in output pdf file. default is hide">
419 <option value="hide">hide-result will not written in file</option>
420 <option value="tex">tex-result will written in file</option>
421 </param>
422 <param name="RESAMPLENUMBER" type="select" label="7(iii). Set Number of times Resample" help="default is 10 ">
423 <option value="10">10</option>
424 <option value="5">5</option>
425 <option value="15">15</option>
426 <option value="20">20</option>
427 <option value="25">25</option>
428 </param>
429 <param name="RESAMPLENUMBERPERCENT" type="select" label="7(iv). Set Percent splitting of data for resampling" help="default is 0.75">
430 <option value="0.75">0.75</option>
431 <option value="0.4">0.4</option>
432 <option value="0.45">0.45</option>
433 <option value="0.5">0.5</option>
434 <option value="0.55">0.55</option>
435 <option value="0.6">0.6</option>
436 <option value="0.65">0.65</option>
437 <option value="0.7">0.7</option>
438 <option value="0.8">0.8</option>
439 </param>
440 </when>
441 <when value="NO6">
442 <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
443
444 <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
445
446 <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
447
448 <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
449
450 </when>
451 </conditional>
452 <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
453
454 <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
455
456 <param name="SETUPGRIDSIZE" type="select" label="8. Set Size of The Grid." help="default is 3 ">
457 <option value="3">3</option>
458 <option value="4">4</option>
459 <option value="5">5</option>
460 <option value="6">6</option>
461 <option value="7">7</option>
462 <option value="8">8</option>
463 <option value="9">9</option>
464 <option value="10">10</option>
465 <option value="11">11</option>
466 <option value="12">12</option>
467 <option value="13">13</option>
468 <option value="14">14</option>
469 <option value="15">15</option>
470 <option value="16">16</option>
471 <option value="17">17</option>
472 <option value="18">18</option>
473 <option value="19">19</option>
474 <option value="20">20</option>
475 </param>
476
477 <param name="FITMODELEVAL" type="boolean" checked="true" value="true" label="9. Build a Model and write result in document" help="default is TRUE"/>
478 <param name="FITMODELRESULT" type="hidden" value="tex" />
479 <param name="FITMODELECHO" type="select" label="9(i). Write Code for model building in Document" help="set True if wish to write code in document .default is False" >
480 <option value="FALSE">false</option>
481 <option value="TRUE">true</option>
482 </param>
483 <param name="MODELDESCRECHO" type="select" label="9(ii). Write code for Model Description " help="set True if wish to print .default is False" >
484 <option value="FALSE">false</option>
485 <option value="TRUE">true</option>
486 </param>
487 <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
488
489 <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
490
491 <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
492
493 <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
494
495 <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
496
497 <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
498
499 <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
500
501 <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
502
503 <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
504
505 <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
506
507 <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
508
509 <param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
510
511 <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
512
513 <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
514
515 <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
516
517 </when>
518 </conditional>
519 </inputs>
520
521 <outputs>
522 <data format="RData" label="Model" name="model" />
523 <data format="pdf" label="Document" name="document" />
524 </outputs>
525 <help>
526
527 .. class:: infomark
528
529
530
531 **Instruction**
532
533 ----------
534
535 Users may change any parameter as their requirement. For normal practice
536
537 user required to provide only input csv file and method for model building.
538
539 More details are given in user manual.Please click here
540
541
542
543
544 </help>
545
546
547
548 </tool>