annotate tool12.xml @ 0:68300206e90d draft default tip

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author deepakjadmin
date Thu, 05 Nov 2015 02:41:30 -0500
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1 <tool id="acaretreg001" name="Concatenate descriptor and response file">
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2 <description>
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3 This Tool Concatenates Descriptor file and response value conatining file for regression analysis
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4 </description>
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5 <!--command interpreter="bash">step1.sh $file1 $output1 </command-->
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6 <command interpreter="">/usr/bin/paste -d ',' $descriptors $response > $completefile </command>
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7 <inputs>
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8 <param format="csv" name="descriptors" type="data" label="Select descriptor file " help="CSV format" />
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9 <param format="txt" name="response" type="data" label="Select response file " help="CSV format" />
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10 </inputs>
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11 <outputs>
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12 <data format="csv" name="completefile" label="Descriptor file with response " />
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13 </outputs>
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14 <help>
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15 .. class:: infomark
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16
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17 **Input descriptor "csv file" format must be as given below :**
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18
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20 Name,feature1,feaure2,feature3,..,featureN
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21
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23 cpd1,623,0.4,3.4,..,..
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25 cpd2,234,0.9,5.6,..,..
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26
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27 cpd3,567,0.5,3.14,..,..
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29 cpd4,231,0.1,1.2,..,..
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31 here "cpd" stands for name or id of a compound. It is rowname with no column header.
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32
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33
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34 **Input response csv file must be as given below :**
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35
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36 Response
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37
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38 0.21
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39
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40 0.36
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42 0.98
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44 1.39
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46 </help>
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47 </tool>