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1 <tool id="tool3AAA" name="Predict Activity using regression model">
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2 <description>
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3 used to predict activity based on given regression model
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4 </description>
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5 <!--command interpreter="bash">step3run.sh $file1 $model $output1 2>/dev/null </command-->
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6
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7 <command interpreter="Rscript">predict.R $file1 $model $output1 2>/dev/null </command>
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8
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9 <inputs>
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10 <param name="model" format="RData" type="data" label="Select Model" />
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11 <param name="file1" format="csv" type="data" label="Select file have descriptor data for activity prediction" help="csv format" />
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12 </inputs>
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13 <outputs>
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14 <data format="txt" name="output1" label="Prediction on $file1.name" />
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15 </outputs>
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16 <help>
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17
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18 .. class:: infomark
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19
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20 Make sure this file **must** contain **all** or **more features** than **input** "csv file" used for **model building**
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21
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22 ----------
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23
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24 **Input "csv file" must be as follows**
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25
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26 ----------
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27
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28
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29 Example file:-
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30
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31
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32
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33 # example.csv
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34
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35 feature1,feature2,feature3,..,featureN
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36
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37 ro1 234,2.3,34,7,..,0.9
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38
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39 ro2 432,3.4,23.1,12,..,0.12
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40
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41 ro3 692,23,12.2,19,..,0.14
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42
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43
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44 -----------
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45
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46 **MODEL**
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47
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48 Choose model file received from model building step.
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49
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50 Model file has "data" file format can be seen by
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51
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52 clicking on output files shown in history .
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53
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54
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55 </help>
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56 </tool>
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