# HG changeset patch
# User deepakjadmin
# Date 1452149721 18000
# Node ID 0552efed75f7fcbd2daa541d16311eab6e174196
# Parent  9106ed218e478d37370f38006758a6d5b3728cf8
Uploaded

diff -r 9106ed218e47 -r 0552efed75f7 addact.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/addact.xml	Thu Jan 07 01:55:21 2016 -0500
@@ -0,0 +1,36 @@
+<tool id="aaapadel002" name="Merge files">
+<description>"Merge data files of Active and Inactive compounds "</description>
+<requirements>
+       <requirement type="set_environment">PADEL_PATH</requirement>
+    
+   
+</requirements>
+
+
+<command interpreter="perl">tool2/addact.pl $Input1 $Activity1 $Input2 $Activity2 $Merged_file</command>
+<inputs>
+<param format="csv" name="Input1" type="data" label="Descriptor File 1" help="Upload Active/Inactive descriptor file in csv format"/>
+  <!--param name="Activity1" type="select"  label="Choose Appropriate Lable">
+	<option value = "Active" selected="TRUE">Active</option>
+	<option value = "Inactive" >Inactive</option>
+  </param-->
+ <param name="Activity1" type="text" value="Active" label="Select type of molecules" help="write something which defines data eg active,positive,inactive,negative,etc." >
+   <validator type="empty_field" message="This field can't be left blank"/>
+        </param>
+
+ <param format="txt" name="Input2" type="data" label="Descriptor File 2" help="Upload Active/Inactive descriptor file in csv format"/>
+ <param name="Activity2" type="text" value="Inactive" label="Select type of molecules" help="write something which defines data eg active,positive,inactive,negative,etc.">
+   <validator type="empty_field" message="This field can't be left blank"/>
+        </param>
+ <!--param name="Activity2" type="select"  label="Choose appropriate Label">
+        <option value = "Inactive" selected= "TRUE">Inactive</option>
+        <option value = "Active" >Active</option>
+ </param-->
+</inputs>
+<outputs>
+<data format="csv" name="Merged_file" label="Merged Mega Descriptor File "/> 
+</outputs>
+<help>
+Provide descriptor files of active/positive and inactive/negative molecules and assign them properly. 
+</help>
+</tool>
diff -r 9106ed218e47 -r 0552efed75f7 removeduplecate.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/removeduplecate.xml	Thu Jan 07 01:55:21 2016 -0500
@@ -0,0 +1,19 @@
+<tool id="aaapadel003" name="Remove redundancy">
+<description>"Removes Repeated Entry From File"</description>
+<requirements>
+       <requirement type="set_environment">PADEL_PATH</requirement>
+    
+   
+</requirements>
+
+<command interpreter="Rscript">tool3/removeduplecate.R $Input1 $Non_redudant_mega_file</command>
+<inputs>
+<param format="txt" name="Input1" type="data" label="Merged Descriptor File" help="csv format"/>
+</inputs>
+<outputs>
+<data format="csv" name="Non_redudant_mega_file" label="Non-redundant Mega Descriptor File"/> 
+</outputs>
+<help>
+run command with Descriptor file and in csv format only .output file will be in CSV format.
+</help>
+</tool>