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date | Thu, 15 Dec 2016 14:18:03 -0500 |
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#!/usr/bin/perl -w # # $RCSfile: DBSchemaTablesToTextFiles.pl,v $ # $Date: 2015/02/28 20:46:19 $ # $Revision: 1.31 $ # # Author: Manish Sud <msud@san.rr.com> # # Copyright (C) 2015 Manish Sud. All rights reserved. # # This file is part of MayaChemTools. # # MayaChemTools is free software; you can redistribute it and/or modify it under # the terms of the GNU Lesser General Public License as published by the Free # Software Foundation; either version 3 of the License, or (at your option) any # later version. # # MayaChemTools is distributed in the hope that it will be useful, but without # any warranty; without even the implied warranty of merchantability of fitness # for a particular purpose. See the GNU Lesser General Public License for more # details. # # You should have received a copy of the GNU Lesser General Public License # along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or # write to the Free Software Foundation Inc., 59 Temple Place, Suite 330, # Boston, MA, 02111-1307, USA. # use strict; use FindBin; use lib "$FindBin::Bin/../lib"; use Getopt::Long; use File::Basename; use Text::ParseWords; use Benchmark; use FileUtil; use TextUtil; use DBUtil; my($ScriptName, %Options, $StartTime, $EndTime, $TotalTime); # Autoflush STDOUT $| = 1; # Starting message... $ScriptName = basename($0); print "\n$ScriptName: Starting...\n\n"; $StartTime = new Benchmark; # Get the options and setup script... SetupScriptUsage(); if ($Options{help} || @ARGV < 1) { die GetUsageFromPod("$FindBin::Bin/$ScriptName"); } my($DBDriver, $DBHost, $DBName, $DBUser, $DBPassword, $DBMode, $ExportDataLabels, $ExportLOBs, $OutDelim, $OutQuote, $ReplaceNullStr); ProcessOptions(); # Connect to database... my($DBHandle); print "Connecting to $DBDriver:database=$DBName as $DBUser...\n"; $DBHandle = DBConnect($DBDriver, $DBName, $DBHost, $DBUser, $DBPassword); # Collect input parameters information... print "Checking input parameter(s)...\n"; my(@DBSchemaNames, @DBTableNames, @DBSQLStatements, @DBTextFiles, $SingleTextFileName); RetrieveDBInfo(); if ($Options{numoutfiles} =~ /^single$/i ) { GenerateSingleTextFile(); } else { GenerateMultipleTextFiles(); } print "\nDisconnecting from $DBDriver:database=$DBName...\n"; DBDisconnect($DBHandle); print "$ScriptName:Done...\n\n"; $EndTime = new Benchmark; $TotalTime = timediff ($EndTime, $StartTime); print "Total time: ", timestr($TotalTime), "\n"; ############################################################################### # Generate multiple text files... sub GenerateMultipleTextFiles { my($Index, $TextFile, $SQL); if (@DBTextFiles > 1) { print "Generating text files...\n"; } TEXTFILE: for $Index (0 .. $#DBTextFiles) { $TextFile = $DBTextFiles[$Index]; $SQL = $DBSQLStatements[$Index]; if (@DBTextFiles > 1) { print "\nGenerating text file $TextFile...\n"; } else { print "Generating text file $TextFile...\n"; } if (!open TEXTFILE, ">$TextFile") { warn "Warning: Abandoning $TextFile generation: Couldn't open it: $! \n"; next TEXTFILE; } print "Processing SQL statement \"$SQL\"...\n"; if (DBSQLToTextFile($DBHandle, $SQL, \*TEXTFILE, $OutDelim, $OutQuote, $ExportDataLabels, $ExportLOBs, $ReplaceNullStr)) { warn "Warning: Abandoning $TextFile generation...\n"; next TEXTFILE; } close TEXTFILE; } } # Generate single text file... sub GenerateSingleTextFile { my($Index, $TextFile, $SQL, $SchemaName, $TableName); open TEXTFILE, ">$SingleTextFileName" or die "Couldn't open $SingleTextFileName: $! \n"; print "Generating text file $SingleTextFileName...\n"; SQL: for $Index (0 .. $#DBSQLStatements) { $SchemaName = $DBSchemaNames[$Index]; $TableName = $DBTableNames[$Index]; $SQL = $DBSQLStatements[$Index]; $TableName = qq($SchemaName.$TableName); $TableName = QuoteAWord($TableName, $OutQuote); print TEXTFILE "\n\n$TableName\n"; if (DBSQLToTextFile($DBHandle, $SQL, \*TEXTFILE, $OutDelim, $OutQuote, $ExportDataLabels, $ExportLOBs, $ReplaceNullStr)) { warn "Warning: Abandoning table $TableName ...\n"; next SQL; } } close TEXTFILE; } # Collect input parameters information... sub RetrieveDBInfo { my($FileExt, $UserFileName, $FileDBPrefix); # Setup out file ext... $FileExt = ($Options{outdelim} =~ /^tab$/i) ? "tsv" : "csv"; $FileDBPrefix = ($DBMode =~ /^exportdata$/i) ? "Export" : "Describe"; # Get user specified information... $UserFileName = ""; if ($Options{root} && (@ARGV == 1)) { my($RootFileDir, $RootFileName, $RootFileExt) = ParseFileName($Options{root}); if ($RootFileName && $RootFileExt) { $UserFileName = $RootFileName; } else { $UserFileName = $Options{root}; } } $SingleTextFileName = ""; if ($Options{numoutfiles} =~ /^single$/i) { $SingleTextFileName = $UserFileName ? $UserFileName : ("$FileDBPrefix" . "SchemaTables"); $SingleTextFileName .= ".$FileExt"; } # For each input schema name: collect all the table names, set up appropriate # SQL statements, and output file names... # my($SchemaName, $SQL, $FileName, @SchemaTableNames, $TableName); @DBSchemaNames = (); @DBTableNames = (); @DBSQLStatements = (); @DBTextFiles = (); @SchemaTableNames = (); SCHEMANAME: for $SchemaName (@ARGV) { $SchemaName = ($DBDriver =~ /^(mysql|Oracle)$/i) ? uc($SchemaName) : $SchemaName; if (!(@SchemaTableNames = DBFetchSchemaTableNames($DBDriver, $DBHandle, $SchemaName))) { warn "Warning: Ignoring schema $SchemaName...\n"; next SCHEMANAME; } # Prepare SQL statement for each table. for $TableName (@SchemaTableNames) { push @DBSchemaNames, $SchemaName; push @DBTableNames, $TableName; $SQL = ($DBMode =~ /^exportdata$/i) ? DBSetupSelectSQL($DBDriver, $TableName, $SchemaName) : DBSetupDescribeSQL($DBDriver, $TableName, $SchemaName); push @DBSQLStatements, $SQL; if ($Options{numoutfiles} =~ /^multiple$/i) { $FileName = $UserFileName ? ("$UserFileName" . "$TableName") : ("$FileDBPrefix" . "$SchemaName" . "$TableName"); $FileName .= ".$FileExt"; if (!$Options{overwrite}) { if (-e $FileName) { die "Error: The file $FileName already exists.\n"; } } push @DBTextFiles, $FileName; } } } } # Process option values... sub ProcessOptions { $DBDriver = $Options{dbdriver} ? $Options{dbdriver} : (exists $ENV{DBI_DRIVER} ? $ENV{DBI_DRIVER} : "") ; if ($DBDriver) { if ($DBDriver =~ /^oracle$/i) { $DBDriver = "Oracle"; } elsif ($DBDriver =~ /^mysql$/i) { $DBDriver = "mysql"; } elsif ($DBDriver =~ /^(Pg|Postgres)$/i) { $DBDriver = "Pg"; } else { if ($Options{dbdriver}) { die "Error: The value specified, $DBDriver, for option \"-d --dbdriver\" is not valid. Allowed values: MySQL, Oracle, Postgres or Pg\n"; } else { die "Error: The value specified, $DBDriver, using environment variable DBI_DRIVER not valid. Allowed values: MySQL, Oracle, Postgres or Pg\n"; } } } else { $DBDriver = "mysql"; } $DBHost = $Options{dbhost} ? $Options{dbhost} : (exists $ENV{DBI_HOST} ? $ENV{DBI_HOST} : "127.0.0.1"); $DBName = $Options{dbname} ? $Options{dbname} : (exists $ENV{DBI_NAME} ? $ENV{DBI_NAME} : ""); if (!$DBName) { if ($DBDriver =~ /^mysql$/i) { $DBName = "mysql"; } } $DBUser = $Options{dbusername} ? $Options{dbusername} : (exists $ENV{DBI_USER} ? $ENV{DBI_USER} : "") ; if (!$DBUser) { die "Error: No database username specified. Use \"--dbusername\" option or environment variable DBI_USER to enter a valid value.\n"; } $DBPassword = $Options{dbpassword} ? $Options{dbpassword} : (exists $ENV{DBI_PASS} ? $ENV{DBI_PASS} : "") ; if (!$DBPassword) { die "Error: No database password specified. Use \"--dbpassword\" option or environment variable DBI_PASS to enter a valid value.\n"; } $DBMode = $Options{mode}; $ExportLOBs = ($Options{exportlobs} =~ /^yes$/i) ? 1 : 0; $ExportDataLabels = ($DBMode =~ /^describetable$/i) ? 1 : (($Options{exportdatalabels} =~ /^yes$/i) ? 1 : 0); $OutDelim = ($Options{outdelim} =~ /^tab$/i ) ? "\t" : (($Options{outdelim} =~ /^semicolon$/i) ? "\;" : "\,"); $OutQuote = ($Options{quote} =~ /^yes$/i) ? 1 : 0; $ReplaceNullStr = (defined($Options{replacenullstr}) && length($Options{replacenullstr})) ? $Options{replacenullstr} : ""; } # Setup script usage and retrieve command line arguments specified using various options... sub SetupScriptUsage { # Retrieve all the options... %Options = (); $Options{mode} = "exportdata"; $Options{exportlobs} = "no"; $Options{exportdatalabels} = "yes"; $Options{numoutfiles} = "single"; $Options{outdelim} = "comma"; $Options{quote} = "yes"; if (!GetOptions(\%Options, "dbdriver|d=s", "dbhost=s", "dbname=s", "dbpassword=s", "dbusername=s", "exportdatalabels=s", "exportlobs=s", "help|h", "mode|m=s", "numoutfiles|n=s", "outdelim=s", "overwrite|o", "quote|q=s", "root|r=s", "replacenullstr=s", "workingdir|w=s")) { die "\nTo get a list of valid options and their values, use \"$ScriptName -h\" or\n\"perl -S $ScriptName -h\" command and try again...\n"; } if ($Options{workingdir}) { if (! -d $Options{workingdir}) { die "Error: The value specified, $Options{workingdir}, for option \"-w --workingdir\" is not a directory name.\n"; } chdir $Options{workingdir} or die "Error: Couldn't chdir $Options{workingdir}: $! \n"; } if ($Options{exportdatalabels} !~ /^(yes|no)$/i) { die "Error: The value specified, $Options{exportlobs}, for option \"--exportdatalabels\" is not valid. Allowed values: yes or no\n"; } if ($Options{exportlobs} !~ /^(yes|no)$/i) { die "Error: The value specified, $Options{exportlobs}, for option \"--exportlobs\" is not valid. Allowed values: yes or no\n"; } if ($Options{numoutfiles} !~ /^(single|multiple)$/i) { die "Error: The value specified, $Options{mode}, for option \"-n --numoutfiles\" is not valid. Allowed values: single or multiple\n"; } if ($Options{mode} !~ /^(exportdata|describetable)$/i) { die "Error: The value specified, $Options{mode}, for option \"-m --mode\" is not valid. Allowed values: exportdata or describetable\n"; } if ($Options{outdelim} !~ /^(comma|semicolon|tab)$/i) { die "Error: The value specified, $Options{outdelim}, for option \"--outdelim\" is not valid. Allowed values: comma, tab, or semicolon\n"; } if ($Options{quote} !~ /^(yes|no)$/i) { die "Error: The value specified, $Options{quote}, for option \"-q --quote\" is not valid. Allowed values: yes or no\n"; } } __END__ =head1 NAME DBSchemaTablesToTextFiles.pl - Export table data from database SchemaName(s) into CSV/TSV text files =head1 SYNOPSIS DBSchemaTablesToTextFiles.pl SchemaName(s)... DBSchemaTablesToTextFiles.pl [B<-d, --dbdriver> mysql | Oracle| Postgres or Pg] [B<--dbhost > hostname] [B<--dbname> databasename] [B<--dbpassword> password] [B<--dbusername> username] [B<--exportdatalabels> yes | no] [B<--exportlobs> yes | no] [B<-h, --help>] [B<-m, --mode> exportdata | describetable] [B<-n, --numoutfilesmode> single | multiple] [B<-o, --overwrite>] [B<--outdelim> comma | tab | semicolon] [B<-q, --quote> yes | no] [B<-r, --root> rootname] [B<--replacenullstr string>] [B<-w --workingdir> dirname] SchemaName(s)... =head1 DESCRIPTION Export table data from database SchemaName(s) into CSV/TSV text files. Use B<-n --numoutfiles> option to control the number of text files generated for a database schema. =head1 OPTIONS =over 4 =item B<-d, --dbdriver> I<mysql | Oracle | Postgres or Pg> Database driver name. Possible values: I<mysql, Oracle, Postgres or Pg>. Default: I<MySQL> or value of environment variable DBI_DRIVER. This script has only been tested with MySQL, Oracle and PostgreSQL drivers. =item B<--dbhost > I<hostname> Database host name. Default: I<127.0.0.1> for both MySQL and Oracle. For remote databases, specify complete remote host domain: I<dbhostname.org> or something like it. =item B<--dbname> I<databasename> Database name. Default: mysql for MySQL, postgres for PostgreSQL and none for Oracle. For connecting to local/remote Oracle databases, this value can be left undefined assuming B<--dbhost> is correctly specified. =item B<--dbpassword> I<password> Database user password. Default: I<none> and value of environment variable DBI_PASS is used for connecting to database. =item B<--dbusername> I<username> Database user name. Default: I<none> and value of environment variable DBI_USER is used for connecting to database. =item B<--exportdatalabels> I<yes | no> This option is mode specific and controls exporting of column data labels during exportdata mode. Possible values: I<yes or no>. Default: I<yes>. =item B<--exportlobs> I<yes | no> This option is mode specific and controls exporting of CLOB/BLOB or BYTEA data columns during exportdata mode. Possible values: I<yes or no>. Default: I<no>. =item B<-h, --help> Print this help message. =item B<-m, --mode> I<exportdata | describetable> Data selection criterion from database. Possible values: I<exportdata or describetable>. Default value: I<exportdata>. =item B<-n, --numoutfilesmode> I<single | multiple> Number of CSV/TSV output files to generate: combine output into one file or generate a different file for each table in a schema. Possible values: I<single or multiple>. Default: I<single>. In a single output file, data for different tables is separated by a blank line. Single outfile option in I<exportdata> mode is quite useful for exporting data from all tables in specifed schemas to one file which can be used for migrating data to another database or simply provide a backup of data; during I<describetable> mode, it provides a means to collect information about columns of all schema tables which can help in creation of these tables on a different database server. =item B<-o, --overwrite> Overwrite existing files. =item B<--outdelim> I<comma | tab | semicolon> Output text file delimiter. Possible values: I<comma, tab, or semicolon>. Default value: I<comma> =item B<-q, --quote> I<yes | no> Put quotes around column values in output text file. Possible values: I<yes or no>. Default value: I<yes>. =item B<-r, --root> I<rootname> New file name is generated using the root:<Root>.<Ext> and <Root><TableName>.<Ext> for I<single> and I<multiple> B<-n --numoutfiles> option values. Default file name for I<single> B<-n --numoutfiles> option value: <Mode>SchemaTables.<Ext>. Default file names for I<multiple> B<-n --numoutfiles> value: <Mode><SchemaName><TableName>.<Ext>. Based on B<-m --mode> option, I<Export> or I<Describe> <Mode> value is used. The csv and tsv <Ext> values are used for comma/semicolon, and tab delimited text files respectively. This option is ignored for multiple input schema names. =item B<--replacenullstr> I<string> Replace NULL or undefined row values with specified value. Default: I<none>. For importing output text files into MySQL database using "load data local infile '<tablename>.tsv' into table <tablename>" command, use I<--raplacenullstr "NULL"> in conjunction with I<--exportdatalabels no>, I<--quote no>, and I<--outdelim tab> options: it'll generate files for direct import into MySQL assuming tables already exists. =item B<-w --workingdir> I<dirname> Location of working directory. Default: current directory. =back =head1 EXAMPLES To export data in all tables from mysql schema on a MySQL server running on a local machine using username/password from DBI_USER and DBI_PASS environmental variables, type: % DBSchemaTablesToTextFiles.pl mysql To describe all tables in mysql and test schemas on a MySQL server running on a remote machine using explicit username/password and capturing the ouput into a DescribeTables.csv file, type: % DBSchemaTablesToTextFiles.pl --dbdriver mysql --dbuser <name> --dbpassword <pasword> --dbname mysql --dbhost <mysqlhostname.org> -r DescribeTable -m describetable -o mysql test To describe all tables in SCOTT schema in Oracle running on a remote machine using explicit username/password and capturing the ouput into a DescribeAllTable.tsv file, type: % DBSchemaTablesToTextFiles.pl --dbdriver Oracle --dbuser <name> --dbpassword <pasword> --dbhost <oraclehostname.com> -r DescribeAllTable -m describetable --outdelim tab --quote no -o SCOTT To export data in all tables in mysql and test schemas on a MySQL server running at a local machine using explicit username/password and capturing the data in TSV file for each table with empty values substitued with NULL and clob/blob data, type: % DBSchemaTablesToTextFiles.pl --dbdriver Oracle --dbuser <name> --dbpassword <pasword> -r ExportTables --outdelim tab --quote no --replacenullstr "NULL" -m exportdata --exportlobs no --numoutfiles multiple -o user user_info =head1 AUTHOR Manish Sud <msud@san.rr.com> =head1 SEE ALSO DBSQLToTextFiles.pl, DBTablesToTextFiles.pl =head1 COPYRIGHT Copyright (C) 2015 Manish Sud. All rights reserved. This file is part of MayaChemTools. MayaChemTools is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. =cut