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<a name="package-FileIO::SDFileIO-"></a>   1 <span class="k">package </span><span class="i">FileIO::SDFileIO</span><span class="sc">;</span>
   2 <span class="c">#</span>
   3 <span class="c"># $RCSfile: SDFileIO.pm,v $</span>
   4 <span class="c"># $Date: 2015/02/28 20:48:43 $</span>
   5 <span class="c"># $Revision: 1.35 $</span>
   6 <span class="c">#</span>
   7 <span class="c"># Author: Manish Sud &lt;msud@san.rr.com&gt;</span>
   8 <span class="c">#</span>
   9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span>
  10 <span class="c">#</span>
  11 <span class="c"># This file is part of MayaChemTools.</span>
  12 <span class="c">#</span>
  13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span>
  14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span>
  15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span>
  16 <span class="c"># later version.</span>
  17 <span class="c">#</span>
  18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span>
  19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span>
  20 <span class="c"># for a particular purpose.  See the GNU Lesser General Public License for more</span>
  21 <span class="c"># details.</span>
  22 <span class="c">#</span>
  23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span>
  24 <span class="c"># along with MayaChemTools; if not, see &lt;http://www.gnu.org/licenses/&gt; or</span>
  25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span>
  26 <span class="c"># Boston, MA, 02111-1307, USA.</span>
  27 <span class="c">#</span>
  28 
  29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span>
  30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span>
  31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span>
  32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  33 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  34 <span class="k">use</span> <span class="w">FileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  35 <span class="k">use</span> <span class="w">SDFileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  36 <span class="k">use</span> <span class="w">FileIO::FileIO</span><span class="sc">;</span>
  37 <span class="k">use</span> <span class="w">FileIO::MDLMolFileIO</span><span class="sc">;</span>
  38 <span class="k">use</span> <span class="w">Molecule</span><span class="sc">;</span>
  39 
  40 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span>
  41 
  42 <span class="i">@ISA</span> = <span class="q">qw(FileIO::FileIO Exporter)</span><span class="sc">;</span>
  43 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span>
  44 <span class="i">@EXPORT_OK</span> = <span class="q">qw(IsSDFile)</span><span class="sc">;</span>
  45 
  46 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span>  <span class="cm">=&gt;</span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span>
  47 
  48 <span class="c"># Setup class variables...</span>
  49 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span>
  50 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  51 
  52 <span class="c"># Class constructor...</span>
<a name="new-"></a>  53 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span>
  54   <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
  55 
  56   <span class="c"># Initialize object...</span>
  57   <span class="k">my</span> <span class="i">$This</span> = <span class="i">$Class</span><span class="i">-&gt;SUPER::new</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  58   <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span>
  59   <span class="i">$This</span><span class="i">-&gt;_InitializeSDFileIO</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
  60 
  61   <span class="i">$This</span><span class="i">-&gt;_InitializeSDFileIOProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
  62 
  63   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
  64 <span class="s">}</span>
  65 
  66 <span class="c"># Initialize any local object data...</span>
  67 <span class="c">#</span>
<a name="_InitializeSDFileIO-"></a>  68 <span class="k">sub </span><span class="m">_InitializeSDFileIO</span> <span class="s">{</span>
  69   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
  70 
  71   <span class="c"># Sorting of MDL data fields during output: Keep the initial order or write &#39;em out alphabetically...</span>
  72   <span class="i">$This</span>-&gt;{<span class="w">SortDataFieldsDuringOutput</span>} = <span class="q">&#39;No&#39;</span><span class="sc">;</span>
  73 
  74   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
  75 <span class="s">}</span>
  76 
  77 <span class="c"># Initialize class ...</span>
<a name="_InitializeClass-"></a>  78 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span>
  79   <span class="c">#Class name...</span>
  80   <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span>
  81 
  82 <span class="s">}</span>
  83 
  84 <span class="c"># Initialize object values...</span>
<a name="_InitializeSDFileIOProperties-"></a>  85 <span class="k">sub </span><span class="m">_InitializeSDFileIOProperties</span> <span class="s">{</span>
  86   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
  87 
  88   <span class="c"># All other property names and values along with all Set/Get&lt;PropertyName&gt; methods</span>
  89   <span class="c"># are implemented on-demand using ObjectProperty class.</span>
  90 
  91   <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span>
  92   <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span>  <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span>
  93     <span class="i">$MethodName</span> = <span class="q">&quot;Set${Name}&quot;</span><span class="sc">;</span>
  94     <span class="i">$This</span><span class="i">-&gt;$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
  95   <span class="s">}</span>
  96 
  97   <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="s">)</span> <span class="s">{</span>
  98     <span class="w">croak</span> <span class="q">&quot;Error: ${ClassName}-&gt;New: Object can&#39;t be instantiated without specifying file name...&quot;</span><span class="sc">;</span>
  99   <span class="s">}</span>
 100 
 101   <span class="c"># Make sure it&#39;s a SD file...</span>
 102   <span class="i">$Name</span> = <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="sc">;</span>
 103   <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">-&gt;IsSDFile</span><span class="s">(</span><span class="i">$Name</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 104     <span class="w">croak</span> <span class="q">&quot;Error: ${ClassName}-&gt;New: Object can&#39;t be instantiated: File, $Name, doesn&#39;t appear to be SDF format...&quot;</span><span class="sc">;</span>
 105   <span class="s">}</span>
 106 
 107   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 108 <span class="s">}</span>
 109 
 110 <span class="c"># Is it a SD file?</span>
<a name="IsSDFile-"></a> 111 <span class="k">sub </span><span class="m">IsSDFile ($;$)</span> <span class="s">{</span>
 112   <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 113   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$Status</span><span class="s">)</span><span class="sc">;</span>
 114 
 115   <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> &amp;&amp; <span class="s">(</span><span class="i">_IsSDFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 116     <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span>
 117   <span class="s">}</span>
 118   <span class="k">else</span> <span class="s">{</span>
 119     <span class="i">$FileName</span> = <span class="i">$FirstParameter</span><span class="sc">;</span>
 120   <span class="s">}</span>
 121 
 122   <span class="c"># Check file extension...</span>
 123   <span class="i">$Status</span> = <span class="i">FileUtil::CheckFileType</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="q">&quot;sd sdf&quot;</span><span class="s">)</span><span class="sc">;</span>
 124 
 125   <span class="k">return</span> <span class="i">$Status</span><span class="sc">;</span>
 126 <span class="s">}</span>
 127 
 128 <span class="c"># Read molecule from file and return molecule object...</span>
<a name="ReadMolecule-"></a> 129 <span class="k">sub </span><span class="m">ReadMolecule</span> <span class="s">{</span>
 130   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 131   <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
 132 
 133   <span class="i">$FileHandle</span> = <span class="i">$This</span><span class="i">-&gt;GetFileHandle</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 134   <span class="k">return</span> <span class="i">$This</span><span class="i">-&gt;ParseMoleculeString</span><span class="s">(</span><span class="i">SDFileUtil::ReadCmpdString</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="s">)</span><span class="sc">;</span>
 135 <span class="s">}</span>
 136 
 137 <span class="c"># Write compound data along with any data field label and values using Molecule object...</span>
<a name="WriteMolecule-"></a> 138 <span class="k">sub </span><span class="m">WriteMolecule</span> <span class="s">{</span>
 139   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Molecule</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 140 
 141   <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">defined</span><span class="s">(</span><span class="i">$Molecule</span><span class="s">)</span> &amp;&amp; <span class="i">$Molecule</span><span class="i">-&gt;IsMolecule</span><span class="s">(</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 142     <span class="w">carp</span> <span class="q">&quot;Warning: ${ClassName}-&gt;WriteMolecule: No data written: Molecule object is not specified...&quot;</span><span class="sc">;</span>
 143     <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 144   <span class="s">}</span>
 145   <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
 146   <span class="i">$FileHandle</span> = <span class="i">$This</span><span class="i">-&gt;GetFileHandle</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 147 
 148   <span class="k">print</span> <span class="i">$FileHandle</span> <span class="i">$This</span><span class="i">-&gt;GenerateMoleculeString</span><span class="s">(</span><span class="i">$Molecule</span><span class="s">)</span> . <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
 149 
 150   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 151 <span class="s">}</span>
 152 
 153 <span class="c"># Retrieve molecule string...</span>
<a name="ReadMoleculeString-"></a> 154 <span class="k">sub </span><span class="m">ReadMoleculeString</span> <span class="s">{</span>
 155   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 156   <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
 157 
 158   <span class="i">$FileHandle</span> = <span class="i">$This</span><span class="i">-&gt;GetFileHandle</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 159   <span class="k">return</span> <span class="i">SDFileUtil::ReadCmpdString</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
 160 <span class="s">}</span>
 161 
 162 <span class="c"># Parse molecule string and return molecule object. ParseMoleculeString supports two invocation methods: class</span>
 163 <span class="c"># method or a package function.</span>
 164 <span class="c">#</span>
<a name="ParseMoleculeString-"></a> 165 <span class="k">sub </span><span class="m">ParseMoleculeString</span> <span class="s">{</span>
 166   <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 167   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$MoleculeString</span><span class="s">)</span><span class="sc">;</span>
 168 
 169   <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> &amp;&amp; <span class="s">(</span><span class="i">_IsSDFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 170     <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$MoleculeString</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span>
 171   <span class="s">}</span>
 172   <span class="k">else</span> <span class="s">{</span>
 173     <span class="i">$MoleculeString</span> = <span class="i">$FirstParameter</span><span class="sc">;</span>
 174     <span class="i">$This</span> = <span class="k">undef</span><span class="sc">;</span>
 175   <span class="s">}</span>
 176   <span class="k">if</span> <span class="s">(</span>!<span class="i">$MoleculeString</span><span class="s">)</span> <span class="s">{</span>
 177     <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span>
 178   <span class="s">}</span>
 179   <span class="c"># Parse molecule data...</span>
 180   <span class="k">my</span><span class="s">(</span><span class="i">$Molecule</span><span class="s">)</span><span class="sc">;</span>
 181   <span class="i">$Molecule</span> = <span class="i">FileIO::MDLMolFileIO::ParseMoleculeString</span><span class="s">(</span><span class="i">$MoleculeString</span><span class="s">)</span><span class="sc">;</span>
 182 
 183   <span class="c"># Process data label/value pairs...</span>
 184   <span class="k">my</span><span class="s">(</span><span class="i">@MoleculeLines</span><span class="cm">,</span> <span class="i">@DataLabels</span><span class="cm">,</span> <span class="i">%DataLabelsAndValues</span><span class="s">)</span><span class="sc">;</span>
 185 
 186   <span class="i">%DataLabelsAndValues</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 187   <span class="i">@MoleculeLines</span> = <span class="k">split</span> <span class="q">/\n/</span><span class="cm">,</span> <span class="i">$MoleculeString</span><span class="sc">;</span>
 188   <span class="i">@DataLabels</span> = <span class="i">SDFileUtil::GetCmpdDataHeaderLabels</span><span class="s">(</span>\<span class="i">@MoleculeLines</span><span class="s">)</span><span class="sc">;</span>
 189   <span class="i">%DataLabelsAndValues</span> = <span class="i">SDFileUtil::GetCmpdDataHeaderLabelsAndValues</span><span class="s">(</span>\<span class="i">@MoleculeLines</span><span class="s">)</span><span class="sc">;</span>
 190 
 191   <span class="c"># Store reference to data labels to keep track of their initial order in SD file...</span>
 192   <span class="i">$Molecule</span><span class="i">-&gt;SetDataFieldLabels</span><span class="s">(</span>\<span class="i">@DataLabels</span><span class="s">)</span><span class="sc">;</span>
 193 
 194   <span class="c"># Store reference to SD data label/value pairs hash as a generic property of molecule...</span>
 195   <span class="i">$Molecule</span><span class="i">-&gt;SetDataFieldLabelAndValues</span><span class="s">(</span>\<span class="i">%DataLabelsAndValues</span><span class="s">)</span><span class="sc">;</span>
 196 
 197   <span class="k">return</span> <span class="i">$Molecule</span><span class="sc">;</span>
 198 <span class="s">}</span>
 199 
 200 <span class="c"># Generate molecule string using molecule object...</span>
<a name="GenerateMoleculeString-"></a> 201 <span class="k">sub </span><span class="m">GenerateMoleculeString</span> <span class="s">{</span>
 202   <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 203   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Molecule</span><span class="s">)</span><span class="sc">;</span>
 204 
 205   <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> &amp;&amp; <span class="s">(</span><span class="i">_IsSDFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 206     <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Molecule</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span>
 207   <span class="s">}</span>
 208   <span class="k">else</span> <span class="s">{</span>
 209     <span class="i">$Molecule</span> = <span class="i">$FirstParameter</span><span class="sc">;</span>
 210     <span class="i">$This</span> = <span class="k">undef</span><span class="sc">;</span>
 211   <span class="s">}</span>
 212   <span class="k">if</span> <span class="s">(</span>!<span class="k">defined</span><span class="s">(</span><span class="i">$Molecule</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 213     <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span>
 214   <span class="s">}</span>
 215   <span class="c"># Generate CTAB data...</span>
 216   <span class="k">my</span><span class="s">(</span><span class="i">$CmpdString</span><span class="s">)</span><span class="sc">;</span>
 217   <span class="i">$CmpdString</span> = <span class="i">FileIO::MDLMolFileIO::GenerateMoleculeString</span><span class="s">(</span><span class="i">$Molecule</span><span class="s">)</span><span class="sc">;</span>
 218 
 219   <span class="c"># Generate any data field labels and values...</span>
 220   <span class="k">my</span><span class="s">(</span><span class="i">$DataFieldLabelsAndValuesString</span><span class="s">)</span><span class="sc">;</span>
 221 
 222   <span class="i">$DataFieldLabelsAndValuesString</span> = <span class="q">&#39;&#39;</span><span class="sc">;</span>
 223   <span class="k">if</span> <span class="s">(</span><span class="i">$Molecule</span><span class="i">-&gt;HasProperty</span><span class="s">(</span><span class="q">&#39;DataFieldLabels&#39;</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
 224     <span class="k">my</span><span class="s">(</span><span class="i">$DataFieldLabelsRef</span><span class="cm">,</span> <span class="i">$DataFieldLabelAndValuesRef</span><span class="cm">,</span> <span class="i">$SortDataFields</span><span class="s">)</span><span class="sc">;</span>
 225 
 226     <span class="i">$SortDataFields</span> = <span class="s">(</span><span class="k">exists</span><span class="s">(</span><span class="i">$This</span>-&gt;{<span class="w">SortDataFieldsDuringOutput</span>}<span class="s">)</span> &amp;&amp; <span class="i">$This</span>-&gt;{<span class="w">SortDataFieldsDuringOutput</span>} =~ <span class="q">/^Yes$/i</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
 227 
 228     <span class="i">$DataFieldLabelsRef</span> = <span class="i">$Molecule</span><span class="i">-&gt;GetDataFieldLabels</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 229     <span class="i">$DataFieldLabelAndValuesRef</span> = <span class="i">$Molecule</span><span class="i">-&gt;GetDataFieldLabelAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 230     <span class="i">$DataFieldLabelsAndValuesString</span> = <span class="k">join</span> <span class="q">&quot;\n&quot;</span><span class="cm">,</span> <span class="i">SDFileUtil::GenerateCmpdDataHeaderLabelsAndValuesLines</span><span class="s">(</span><span class="i">$DataFieldLabelsRef</span><span class="cm">,</span> <span class="i">$DataFieldLabelAndValuesRef</span><span class="cm">,</span> <span class="i">$SortDataFields</span><span class="s">)</span><span class="sc">;</span>
 231   <span class="s">}</span>
 232 
 233   <span class="k">return</span> <span class="q">&quot;${CmpdString }\n${DataFieldLabelsAndValuesString}\n\$\$\$\$&quot;</span><span class="sc">;</span>
 234 <span class="s">}</span>
 235 
 236 
 237 <span class="c"># Is it a SDFileIO object?</span>
<a name="_IsSDFileIO-"></a> 238 <span class="k">sub </span><span class="m">_IsSDFileIO</span> <span class="s">{</span>
 239   <span class="k">my</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 240 
 241   <span class="k">return</span> <span class="s">(</span><span class="i">Scalar::Util::blessed</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> &amp;&amp; <span class="i">$Object</span><span class="i">-&gt;isa</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
 242 <span class="s">}</span>
 243 
<a name="EOF-"></a></pre>
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