diff mayachemtools/docs/modules/man3/FingerprintsStringUtil.3 @ 0:73ae111cf86f draft

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author deepakjadmin
date Wed, 20 Jan 2016 11:55:01 -0500
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+.\" ========================================================================
+.\"
+.IX Title "FINGERPRINTSSTRINGUTIL 1"
+.TH FINGERPRINTSSTRINGUTIL 1 "2015-03-29" "perl v5.14.2" "MayaChemTools"
+.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
+.\" way too many mistakes in technical documents.
+.if n .ad l
+.nh
+.SH "NAME"
+FingerprintsStringUtil
+.SH "SYNOPSIS"
+.IX Header "SYNOPSIS"
+use Fingerprints::FingerprintsStringUtil;
+.PP
+use Fingerprints::FingerprintsStringUtil qw(:all);
+.SH "DESCRIPTION"
+.IX Header "DESCRIPTION"
+\&\fBFingerprintsStringUtil\fR module provides the following functions:
+.PP
+AreFingerprintsStringValuesValid, GenerateFingerprintsBitVectorString,
+GenerateFingerprintsString, GenerateFingerprintsVectorString,
+GetDefaultBitStringFormat, GetDefaultBitsOrder, GetDefaultVectorStringFormat,
+GetFingeprintsStringDelimiter, GetFingerprintsStringTypeAndDescription,
+GetFingerprintsStringValues, ParseFingerprintsBitVectorString,
+ParseFingerprintsString, ParseFingerprintsVectorString
+.PP
+The current release of MayaChemTools supports the following types of fingerprint
+bit-vector and vector strings:
+.PP
+.Vb 6
+\&    FingerprintsVector;AtomNeighborhoods:AtomicInvariantsAtomTypes:MinRadi
+\&    us0:MaxRadius2;41;AlphaNumericalValues;ValuesString;NR0\-C.X1.BO1.H3\-AT
+\&    C1:NR1\-C.X3.BO3.H1\-ATC1:NR2\-C.X1.BO1.H3\-ATC1:NR2\-C.X3.BO4\-ATC1 NR0\-C.X
+\&    1.BO1.H3\-ATC1:NR1\-C.X3.BO3.H1\-ATC1:NR2\-C.X1.BO1.H3\-ATC1:NR2\-C.X3.BO4\-A
+\&    TC1 NR0\-C.X2.BO2.H2\-ATC1:NR1\-C.X2.BO2.H2\-ATC1:NR1\-C.X3.BO3.H1\-ATC1:NR2
+\&    \-C.X2.BO2.H2\-ATC1:NR2\-N.X3.BO3\-ATC1:NR2\-O.X1.BO1.H1\-ATC1 NR0\-C.X2.B...
+\&
+\&    FingerprintsVector;AtomTypesCount:AtomicInvariantsAtomTypes:ArbitraryS
+\&    ize;10;NumericalValues;IDsAndValuesString;C.X1.BO1.H3 C.X2.BO2.H2 C.X2
+\&    .BO3.H1 C.X3.BO3.H1 C.X3.BO4 F.X1.BO1 N.X2.BO2.H1 N.X3.BO3 O.X1.BO1.H1
+\&    O.X1.BO2;2 4 14 3 10 1 1 1 3 2
+\&
+\&    FingerprintsVector;AtomTypesCount:SLogPAtomTypes:ArbitrarySize;16;Nume
+\&    ricalValues;IDsAndValuesString;C1 C10 C11 C14 C18 C20 C21 C22 C5 CS F
+\&    N11 N4 O10 O2 O9;5 1 1 1 14 4 2 1 2 2 1 1 1 1 3 1
+\&
+\&    FingerprintsVector;AtomTypesCount:SLogPAtomTypes:FixedSize;67;OrderedN
+\&    umericalValues;IDsAndValuesString;C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C
+\&    12 C13 C14 C15 C16 C17 C18 C19 C20 C21 C22 C23 C24 C25 C26 C27 CS N1 N
+\&    2 N3 N4 N5 N6 N7 N8 N9 N10 N11 N12 N13 N14 NS O1 O2 O3 O4 O5 O6 O7 O8
+\&    O9 O10 O11 O12 OS F Cl Br I Hal P S1 S2 S3 Me1 Me2;5 0 0 0 2 0 0 0 0 1
+\&    1 0 0 1 0 0 0 14 0 4 2 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0...
+\&
+\&    FingerprintsVector;EStateIndicies:ArbitrarySize;11;NumericalValues;IDs
+\&    AndValuesString;SaaCH SaasC SaasN SdO SdssC SsCH3 SsF SsOH SssCH2 SssN
+\&    H SsssCH;24.778 4.387 1.993 25.023 \-1.435 3.975 14.006 29.759 \-0.073 3
+\&    .024 \-2.270
+\&
+\&    FingerprintsVector;EStateIndicies:FixedSize;87;OrderedNumericalValues;
+\&    ValuesString;0 0 0 0 0 0 0 3.975 0 \-0.073 0 0 24.778 \-2.270 0 0 \-1.435
+\&    4.387 0 0 0 0 0 0 3.024 0 0 0 0 0 0 0 1.993 0 29.759 25.023 0 0 0 0 1
+\&    4.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+\&    0 0 0 0 0 0 0 0 0 0 0 0 0 0
+\&
+\&    FingerprintsVector;ExtendedConnectivity:AtomicInvariantsAtomTypes:Radi
+\&    us2;60;AlphaNumericalValues;ValuesString;73555770 333564680 352413391
+\&    666191900 1001270906 1371674323 1481469939 1977749791 2006158649 21414
+\&    08799 49532520 64643108 79385615 96062769 273726379 564565671 85514103
+\&    5 906706094 988546669 1018231313 1032696425 1197507444 1331250018 1338
+\&    532734 1455473691 1607485225 1609687129 1631614296 1670251330 17303...
+\&
+\&    FingerprintsVector;ExtendedConnectivityCount:AtomicInvariantsAtomTypes
+\&    :Radius2;60;NumericalValues;IDsAndValuesString;73555770 333564680 3524
+\&    13391 666191900 1001270906 1371674323 1481469939 1977749791 2006158649
+\&    2141408799 49532520 64643108 79385615 96062769 273726379 564565671...;
+\&    3 2 1 1 14 1 2 10 4 3 1 1 1 1 2 1 2 1 1 1 2 3 1 1 2 1 3 3 8 2 2 2 6 2
+\&    1 2 1 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1
+\&
+\&    FingerprintsBitVector;ExtendedConnectivityBits:AtomicInvariantsAtomTyp
+\&    es:Radius2;1024;BinaryString;Ascending;0000000000000000000000000000100
+\&    0000000001010000000110000011000000000000100000000000000000000000100001
+\&    1000000110000000000000000000000000010011000000000000000000000000010000
+\&    0000000000000000000000000010000000000000000001000000000000000000000000
+\&    0000000000010000100001000000000000101000000000000000100000000000000...
+\&
+\&    FingerprintsVector;ExtendedConnectivity:FunctionalClassAtomTypes:Radiu
+\&    s2;57;AlphaNumericalValues;ValuesString;24769214 508787397 850393286 8
+\&    62102353 981185303 1231636850 1649386610 1941540674 263599683 32920567
+\&    1 571109041 639579325 683993318 723853089 810600886 885767127 90326012
+\&    7 958841485 981022393 1126908698 1152248391 1317567065 1421489994 1455
+\&    632544 1557272891 1826413669 1983319256 2015750777 2029559552 20404...
+\&
+\&    FingerprintsVector;ExtendedConnectivity:EStateAtomTypes:Radius2;62;Alp
+\&    haNumericalValues;ValuesString;25189973 528584866 662581668 671034184
+\&    926543080 1347067490 1738510057 1759600920 2034425745 2097234755 21450
+\&    44754 96779665 180364292 341712110 345278822 386540408 387387308 50430
+\&    1706 617094135 771528807 957666640 997798220 1158349170 1291258082 134
+\&    1138533 1395329837 1420277211 1479584608 1486476397 1487556246 1566...
+\&
+\&    FingerprintsBitVector;MACCSKeyBits;166;BinaryString;Ascending;00000000
+\&    0000000000000000000000000000000001001000010010000000010010000000011100
+\&    0100101010111100011011000100110110000011011110100110111111111111011111
+\&    11111111111110111000
+\&
+\&    FingerprintsBitVector;MACCSKeyBits;322;BinaryString;Ascending;11101011
+\&    1110011111100101111111000111101100110000000000000011100010000000000000
+\&    0000000000000000000000000000000000000000000000101000000000000000000000
+\&    0000000000000000000000000000000000000000000000000000000000000000000000
+\&    0000000000000000000000000000000000000011000000000000000000000000000000
+\&    0000000000000000000000000000000000000000
+\&
+\&    FingerprintsVector;MACCSKeyCount;166;OrderedNumericalValues;ValuesStri
+\&    ng;0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+\&    0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 4 0 0 2 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0
+\&    0 0 0 0 1 1 8 0 0 0 1 0 0 1 0 1 0 1 0 3 1 3 1 0 0 0 1 2 0 11 1 0 0 0
+\&    5 0 0 1 2 0 1 1 0 0 0 0 0 1 1 0 1 1 1 1 0 4 0 0 1 1 0 4 6 1 1 1 2 1 1
+\&    3 5 2 2 0 5 3 5 1 1 2 5 1 2 1 2 4 8 3 5 5 2 2 0 3 5 4 1
+\&
+\&    FingerprintsVector;MACCSKeyCount;322;OrderedNumericalValues;ValuesStri
+\&    ng;14 8 2 0 2 0 4 4 2 1 4 0 0 2 5 10 5 2 1 0 0 2 0 5 13 3 28 5 5 3 0 0
+\&    0 4 2 1 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 5 3 0 0 0 1 0
+\&    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+\&    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 2 0 0 0 0 0 0 0 0 0
+\&    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ...
+\&
+\&    FingerprintsBitVector;PathLengthBits:AtomicInvariantsAtomTypes:MinLeng
+\&    th1:MaxLength8;1024;BinaryString;Ascending;001000010011010101011000110
+\&    0100010101011000101001011100110001000010001001101000001001001001001000
+\&    0010110100000111001001000001001010100100100000000011000000101001011100
+\&    0010000001000101010100000100111100110111011011011000000010110111001101
+\&    0101100011000000010001000011000010100011101100001000001000100000000...
+\&
+\&    FingerprintsVector;PathLengthCount:AtomicInvariantsAtomTypes:MinLength
+\&    1:MaxLength8;432;NumericalValues;IDsAndValuesPairsString;C.X1.BO1.H3 2
+\&    C.X2.BO2.H2 4 C.X2.BO3.H1 14 C.X3.BO3.H1 3 C.X3.BO4 10 F.X1.BO1 1 N.X
+\&    2.BO2.H1 1 N.X3.BO3 1 O.X1.BO1.H1 3 O.X1.BO2 2 C.X1.BO1.H3C.X3.BO3.H1
+\&    2 C.X2.BO2.H2C.X2.BO2.H2 1 C.X2.BO2.H2C.X3.BO3.H1 4 C.X2.BO2.H2C.X3.BO
+\&    4 1 C.X2.BO2.H2N.X3.BO3 1 C.X2.BO3.H1:C.X2.BO3.H1 10 C.X2.BO3.H1:C....
+\&
+\&    FingerprintsVector;PathLengthCount:MMFF94AtomTypes:MinLength1:MaxLengt
+\&    h8;463;NumericalValues;IDsAndValuesPairsString;C5A 2 C5B 2 C=ON 1 CB 1
+\&    8 COO 1 CR 9 F 1 N5 1 NC=O 1 O=CN 1 O=CO 1 OC=O 1 OR 2 C5A:C5B 2 C5A:N
+\&    5 2 C5ACB 1 C5ACR 1 C5B:C5B 1 C5BC=ON 1 C5BCB 1 C=ON=O=CN 1 C=ONNC=O 1
+\&    CB:CB 18 CBF 1 CBNC=O 1 COO=O=CO 1 COOCR 1 COOOC=O 1 CRCR 7 CRN5 1 CR
+\&    OR 2 C5A:C5B:C5B 2 C5A:C5BC=ON 1 C5A:C5BCB 1 C5A:N5:C5A 1 C5A:N5CR ...
+\&
+\&    FingerprintsVector;TopologicalAtomPairs:AtomicInvariantsAtomTypes:MinD
+\&    istance1:MaxDistance10;223;NumericalValues;IDsAndValuesString;C.X1.BO1
+\&    .H3\-D1\-C.X3.BO3.H1 C.X2.BO2.H2\-D1\-C.X2.BO2.H2 C.X2.BO2.H2\-D1\-C.X3.BO3.
+\&    H1 C.X2.BO2.H2\-D1\-C.X3.BO4 C.X2.BO2.H2\-D1\-N.X3.BO3 C.X2.BO3.H1\-D1\-...;
+\&    2 1 4 1 1 10 8 1 2 6 1 2 2 1 2 1 2 2 1 2 1 5 1 10 12 2 2 1 2 1 9 1 3 1
+\&    1 1 2 2 1 3 6 1 6 14 2 2 2 3 1 3 1 8 2 2 1 3 2 6 1 2 2 5 1 3 1 23 1...
+\&
+\&    FingerprintsVector;TopologicalAtomPairs:FunctionalClassAtomTypes:MinDi
+\&    stance1:MaxDistance10;144;NumericalValues;IDsAndValuesString;Ar\-D1\-Ar
+\&    Ar\-D1\-Ar.HBA Ar\-D1\-HBD Ar\-D1\-Hal Ar\-D1\-None Ar.HBA\-D1\-None HBA\-D1\-NI H
+\&    BA\-D1\-None HBA.HBD\-D1\-NI HBA.HBD\-D1\-None HBD\-D1\-None NI\-D1\-None No...;
+\&    23 2 1 1 2 1 1 1 1 2 1 1 7 28 3 1 3 2 8 2 1 1 1 5 1 5 24 3 3 4 2 13 4
+\&    1 1 4 1 5 22 4 4 3 1 19 1 1 1 1 1 2 2 3 1 1 8 25 4 5 2 3 1 26 1 4 1 ...
+\&
+\&    FingerprintsVector;TopologicalAtomTorsions:AtomicInvariantsAtomTypes;3
+\&    3;NumericalValues;IDsAndValuesString;C.X1.BO1.H3\-C.X3.BO3.H1\-C.X3.BO4\-
+\&    C.X3.BO4 C.X1.BO1.H3\-C.X3.BO3.H1\-C.X3.BO4\-N.X3.BO3 C.X2.BO2.H2\-C.X2.BO
+\&    2.H2\-C.X3.BO3.H1\-C.X2.BO2.H2 C.X2.BO2.H2\-C.X2.BO2.H2\-C.X3.BO3.H1\-O...;
+\&    2 2 1 1 2 2 1 1 3 4 4 8 4 2 2 6 2 2 1 2 1 1 2 1 1 2 6 2 4 2 1 3 1
+\&
+\&    FingerprintsVector;TopologicalAtomTorsions:EStateAtomTypes;36;Numerica
+\&    lValues;IDsAndValuesString;aaCH\-aaCH\-aaCH\-aaCH aaCH\-aaCH\-aaCH\-aasC aaC
+\&    H\-aaCH\-aasC\-aaCH aaCH\-aaCH\-aasC\-aasC aaCH\-aaCH\-aasC\-sF aaCH\-aaCH\-aasC\-
+\&    ssNH aaCH\-aasC\-aasC\-aasC aaCH\-aasC\-aasC\-aasN aaCH\-aasC\-ssNH\-dssC a...;
+\&    4 4 8 4 2 2 6 2 2 2 4 3 2 1 3 3 2 2 2 1 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 2
+\&
+\&    FingerprintsVector;TopologicalAtomTriplets:AtomicInvariantsAtomTypes:M
+\&    inDistance1:MaxDistance10;3096;NumericalValues;IDsAndValuesString;C.X1
+\&    .BO1.H3\-D1\-C.X1.BO1.H3\-D1\-C.X3.BO3.H1\-D2 C.X1.BO1.H3\-D1\-C.X2.BO2.H2\-D1
+\&    0\-C.X3.BO4\-D9 C.X1.BO1.H3\-D1\-C.X2.BO2.H2\-D3\-N.X3.BO3\-D4 C.X1.BO1.H3\-D1
+\&    \-C.X2.BO2.H2\-D4\-C.X2.BO2.H2\-D5 C.X1.BO1.H3\-D1\-C.X2.BO2.H2\-D6\-C.X3....;
+\&    1 2 2 2 2 2 2 2 8 8 4 8 4 4 2 2 2 2 4 2 2 2 4 2 2 2 2 1 2 2 4 4 4 2 2
+\&    2 4 4 4 8 4 4 2 4 4 4 2 4 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 8...
+\&
+\&    FingerprintsVector;TopologicalAtomTriplets:SYBYLAtomTypes:MinDistance1
+\&    :MaxDistance10;2332;NumericalValues;IDsAndValuesString;C.2\-D1\-C.2\-D9\-C
+\&    .3\-D10 C.2\-D1\-C.2\-D9\-C.ar\-D10 C.2\-D1\-C.3\-D1\-C.3\-D2 C.2\-D1\-C.3\-D10\-C.3\-
+\&    D9 C.2\-D1\-C.3\-D2\-C.3\-D3 C.2\-D1\-C.3\-D2\-C.ar\-D3 C.2\-D1\-C.3\-D3\-C.3\-D4 C.2
+\&    \-D1\-C.3\-D3\-N.ar\-D4 C.2\-D1\-C.3\-D3\-O.3\-D2 C.2\-D1\-C.3\-D4\-C.3\-D5 C.2\-D1\-C.
+\&    3\-D5\-C.3\-D6 C.2\-D1\-C.3\-D5\-O.3\-D4 C.2\-D1\-C.3\-D6\-C.3\-D7 C.2\-D1\-C.3\-D7...
+\&
+\&    FingerprintsVector;TopologicalPharmacophoreAtomPairs:ArbitrarySize:Min
+\&    Distance1:MaxDistance10;54;NumericalValues;IDsAndValuesString;H\-D1\-H H
+\&    \-D1\-NI HBA\-D1\-NI HBD\-D1\-NI H\-D2\-H H\-D2\-HBA H\-D2\-HBD HBA\-D2\-HBA HBA\-D2\-
+\&    HBD H\-D3\-H H\-D3\-HBA H\-D3\-HBD H\-D3\-NI HBA\-D3\-NI HBD\-D3\-NI H\-D4\-H H\-D4\-H
+\&    BA H\-D4\-HBD HBA\-D4\-HBA HBA\-D4\-HBD HBD\-D4\-HBD H\-D5\-H H\-D5\-HBA H\-D5\-...;
+\&    18 1 2 1 22 12 8 1 2 18 6 3 1 1 1 22 13 6 5 7 2 28 9 5 1 1 1 36 16 10
+\&    3 4 1 37 10 8 1 35 10 9 3 3 1 28 7 7 4 18 16 12 5 1 2 1
+\&
+\&    FingerprintsVector;TopologicalPharmacophoreAtomPairs:FixedSize:MinDist
+\&    ance1:MaxDistance10;150;OrderedNumericalValues;ValuesString;18 0 0 1 0
+\&    0 0 2 0 0 1 0 0 0 0 22 12 8 0 0 1 2 0 0 0 0 0 0 0 0 18 6 3 1 0 0 0 1
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+\&    0 0 0 36 16 10 0 0 3 4 0 0 1 0 0 0 0 0 37 10 8 0 0 0 0 1 0 0 0 0 0 0
+\&    0 35 10 9 0 0 3 3 0 0 1 0 0 0 0 0 28 7 7 4 0 0 0 0 0 0 0 0 0 0 0 18...
+\&
+\&    FingerprintsVector;TopologicalPharmacophoreAtomTriplets:ArbitrarySize:
+\&    MinDistance1:MaxDistance10;696;NumericalValues;IDsAndValuesString;Ar1\-
+\&    Ar1\-Ar1 Ar1\-Ar1\-H1 Ar1\-Ar1\-HBA1 Ar1\-Ar1\-HBD1 Ar1\-H1\-H1 Ar1\-H1\-HBA1 Ar1
+\&    \-H1\-HBD1 Ar1\-HBA1\-HBD1 H1\-H1\-H1 H1\-H1\-HBA1 H1\-H1\-HBD1 H1\-HBA1\-HBA1 H1\-
+\&    HBA1\-HBD1 H1\-HBA1\-NI1 H1\-HBD1\-NI1 HBA1\-HBA1\-NI1 HBA1\-HBD1\-NI1 Ar1\-...;
+\&    46 106 8 3 83 11 4 1 21 5 3 1 2 2 1 1 1 100 101 18 11 145 132 26 14 23
+\&    28 3 3 5 4 61 45 10 4 16 20 7 5 1 3 4 5 3 1 1 1 1 5 4 2 1 2 2 2 1 1 1
+\&    119 123 24 15 185 202 41 25 22 17 3 5 85 95 18 11 23 17 3 1 1 6 4 ...
+\&
+\&    FingerprintsVector;TopologicalPharmacophoreAtomTriplets:FixedSize:MinD
+\&    istance1:MaxDistance10;2692;OrderedNumericalValues;ValuesString;46 106
+\&    8 3 0 0 83 11 4 0 0 0 1 0 0 0 0 0 0 0 0 21 5 3 0 0 1 2 2 0 0 1 0 0 0
+\&    0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 101 18 11 0 0 145 132 26
+\&    14 0 0 23 28 3 3 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 45 10 4 0
+\&    0 16 20 7 5 1 0 3 4 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 5 ...
+.Ve
+.SH "FUNCTIONS"
+.IX Header "FUNCTIONS"
+.IP "\fBAreFingerprintsStringValuesValid\fR" 4
+.IX Item "AreFingerprintsStringValuesValid"
+.Vb 1
+\&    $Status = AreFingerprintsStringValuesValid($FPString);
+.Ve
+.Sp
+Returns 0 or 1 based on whether \fIFingerprintsString\fR contains valid values.
+.IP "\fBGetDefaultBitStringFormat\fR" 4
+.IX Item "GetDefaultBitStringFormat"
+.Vb 1
+\&    $BitStringFormat = GetDefaultBitStringFormat();
+.Ve
+.Sp
+Returns default \fBBitStringFormat\fR for fingerprints bit-vector strings.
+.IP "\fBGetDefaultBitsOrder\fR" 4
+.IX Item "GetDefaultBitsOrder"
+.Vb 1
+\&    $BitsOrder = GetDefaultBitsOrder();
+.Ve
+.Sp
+Returns default \fBBitsOrder\fR for fingerprints bit-vector fingerprints.
+.IP "\fBGetDefaultVectorStringFormat\fR" 4
+.IX Item "GetDefaultVectorStringFormat"
+.Vb 1
+\&    $StringFormat = GetDefaultVectorStringFormat();
+.Ve
+.Sp
+Returns default \fBVectorStringFormat\fR for fingerprints vector strings.
+.IP "\fBGetFingeprintsStringDelimiter\fR" 4
+.IX Item "GetFingeprintsStringDelimiter"
+.Vb 1
+\&    $Delimiter = GetFingeprintsStringDelimiter();
+.Ve
+.Sp
+Returns string \fBDelimiter\fR used to generate fingerprints bit-vector and vector strings.
+.IP "\fBGenerateFingerprintsBitVectorString\fR" 4
+.IX Item "GenerateFingerprintsBitVectorString"
+.Vb 2
+\&    $FPString = GenerateFingerprintsBitVectorString($FPBitVectorObject,
+\&                [$BitStringFormat, $BitsOrder]);
+.Ve
+.Sp
+Returns a \fBFingerprintsString\fR generated using \fIFingerprintsBitVectorObject\fR and
+optionally specified \fIBitStringFormat\fR and \fIBitsOrder\fR values.
+.Sp
+Possible \fIBitStringFormat\fR values: \fIBinaryString, Binary, Bin, HexadecimalString,
+Hexadecimal, or Hex\fR. Default \fIBitStringFormat\fR value: \fIBinaryString\fR.
+.Sp
+Possible \fIBitsOrder\fR values: \fIAscending or Descending\fR. Default \fIBitsOrder\fR value:
+\&\fIAscending\fR.
+.IP "\fBGenerateFingerprintsVectorString\fR" 4
+.IX Item "GenerateFingerprintsVectorString"
+.Vb 2
+\&    $FPString = GenerateFingerprintsVectorString($FPVectorObject,
+\&                [$VectorStringFormat]);
+.Ve
+.Sp
+Returns a \fBFingerprintsString\fR generated using \fIFingerprintsVectorObject\fR and optionally
+specified \fIVectorStringFormat\fR.
+.Sp
+Possible \fIVectorStringFormat\fR values: \fIIDsAndValuesString, IDsAndValues,
+IDsAndValuesPairsString, IDsAndValuesPairs, ValuesAndIDsString, ValuesAndIDs,
+ValuesAndIDsPairsString, ValuesAndIDsPairs, ValuesString, Values\fR.
+.Sp
+Default \fIVectorStringFormat\fR value: for \fINumericalValues\fR \fIFPVectorType\fR \-
+\&\fIIDsAndValuesString\fR; for all other \fIFPVectorType\fRs \- \fIValuesString\fR.
+.IP "\fBGenerateFingerprintsString\fR" 4
+.IX Item "GenerateFingerprintsString"
+.Vb 2
+\&    $FPString = GenerateFingerprintsBitVectorString($FPBitVectorObject,
+\&                [$BitStringFormat, $BitsOrder]);
+\&
+\&    $FPString = GenerateFingerprintsVectorString($FPVectorObject,
+\&                [$VectorStringFormat]);
+.Ve
+.Sp
+Returns a \fBFingerprintsString\fR generated using \fIFingerprintsBitVectorObject\fR or
+\&\fIFingerprintsVectorObject\fR and optionally specified parameters.
+.IP "\fBGetFingerprintsStringTypeAndDescription\fR" 4
+.IX Item "GetFingerprintsStringTypeAndDescription"
+.Vb 2
+\&    ($FPType, $FPDescription) = GetFingerprintsStringTypeAndDescription(
+\&                                $FPString);
+.Ve
+.Sp
+Returns \fBFingerprintsStringType\fR and \fIFingerprintsStringDescription\fR strings for
+\&\fBFingerprintsString\fR corresponding to \fBFingerprintsBitVectorObject\fR or
+\&\fBFingerprintsVectorObject\fR.
+.IP "\fBGetFingerprintsStringValues\fR" 4
+.IX Item "GetFingerprintsStringValues"
+.Vb 1
+\&    @FPStringValues = GetFingerprintsStringValues($FPString);
+.Ve
+.Sp
+Parses \fBFingerprintsString\fR corresponding to \fBFingerprintsBitVectorObject\fR or
+\&\fBFingerprintsVectorObject\fR and returns its individual component values as an
+array.
+.IP "\fBParseFingerprintsBitVectorString\fR" 4
+.IX Item "ParseFingerprintsBitVectorString"
+.Vb 2
+\&    $FPBitVectorObject = ParseFingerprintsBitVectorString($FPBitVectorString,
+\&                         [$ValidateValues]);
+.Ve
+.Sp
+Returns \fBFingerprintsBitVectorObject\fR generated by parsing \fIFingerprintsBitVectorString\fR
+with optional validation of its component values.
+.IP "\fBParseFingerprintsString\fR" 4
+.IX Item "ParseFingerprintsString"
+.Vb 2
+\&    $FPBitVectorObject = ParseFingerprintsBitVectorString($FPBitVectorString,
+\&                         [$ValidateValues]);
+\&
+\&    $FPVectorObject = ParseFingerprintsVectorString($FPVectorString,
+\&                      [$ValidateValues]);
+.Ve
+.Sp
+Returns \fBFingerprintsBitVectorObject\fR or \fI\f(BIFingerprintsVectorObject\fI\fR generated
+by parsing \fIFingerprintsBitVectorString\fR or \fIFingerprintsVectorString\fR with
+optional validation of its component values.
+.IP "\fBParseFingerprintsVectorString\fR" 4
+.IX Item "ParseFingerprintsVectorString"
+.Vb 2
+\&    $FPVectorObject = ParseFingerprintsVectorString($FPVectorString,
+\&                      [$ValidateValues]);
+.Ve
+.Sp
+Returns \fBFingerprintsVectorObject\fR generated by parsing \fIFingerprintsVectorString\fR
+with optional validation of its component values.
+.SH "AUTHOR"
+.IX Header "AUTHOR"
+Manish Sud <msud@san.rr.com>
+.SH "SEE ALSO"
+.IX Header "SEE ALSO"
+BitVector.pm, FingerprintsBitVector.pm, FingerprintsVector.pm, Vector.pm
+.SH "COPYRIGHT"
+.IX Header "COPYRIGHT"
+Copyright (C) 2015 Manish Sud. All rights reserved.
+.PP
+This file is part of MayaChemTools.
+.PP
+MayaChemTools is free software; you can redistribute it and/or modify it under
+the terms of the \s-1GNU\s0 Lesser General Public License as published by the Free
+Software Foundation; either version 3 of the License, or (at your option)
+any later version.