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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 11:55:01 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mayachemtools/docs/modules/html/code/FingerprintsTextFileIO.html Wed Jan 20 11:55:01 2016 -0500 @@ -0,0 +1,1306 @@ +<html> +<head> +<title>MayaChemTools:Code:FileIO::FingerprintsTextFileIO.pm</title> +<meta http-equiv="content-type" content="text/html;charset=utf-8"> +<link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css"> +</head> +<body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> +<br/> +<center> +<a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> +</center> +<br/> +<pre> +<a name="package-FileIO::FingerprintsTextFileIO-"></a> 1 <span class="k">package </span><span class="i">FileIO::FingerprintsTextFileIO</span><span class="sc">;</span> + 2 <span class="c">#</span> + 3 <span class="c"># $RCSfile: FingerprintsTextFileIO.pm,v $</span> + 4 <span class="c"># $Date: 2015/02/28 20:48:43 $</span> + 5 <span class="c"># $Revision: 1.19 $</span> + 6 <span class="c">#</span> + 7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span> + 8 <span class="c">#</span> + 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span> + 10 <span class="c">#</span> + 11 <span class="c"># This file is part of MayaChemTools.</span> + 12 <span class="c">#</span> + 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span> + 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span> + 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span> + 16 <span class="c"># later version.</span> + 17 <span class="c">#</span> + 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span> + 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span> + 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span> + 21 <span class="c"># details.</span> + 22 <span class="c">#</span> + 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span> + 24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span> + 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span> + 26 <span class="c"># Boston, MA, 02111-1307, USA.</span> + 27 <span class="c">#</span> + 28 + 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span> + 30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span> + 31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span> + 32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 33 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 34 <span class="k">use</span> <span class="w">FileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 35 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsStringUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 36 <span class="k">use</span> <span class="w">FileIO::FileIO</span><span class="sc">;</span> + 37 + 38 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span> + 39 + 40 <span class="i">@ISA</span> = <span class="q">qw(FileIO::FileIO Exporter)</span><span class="sc">;</span> + 41 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span> + 42 <span class="i">@EXPORT_OK</span> = <span class="q">qw(IsFingerprintsTextFile)</span><span class="sc">;</span> + 43 + 44 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span> <span class="cm">=></span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span> + 45 + 46 <span class="c"># Setup class variables...</span> + 47 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span> + 48 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 49 + 50 <span class="c"># Class constructor...</span> +<a name="new-"></a> 51 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span> + 52 <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 53 + 54 <span class="c"># Initialize object...</span> + 55 <span class="k">my</span> <span class="i">$This</span> = <span class="i">$Class</span><span class="i">->SUPER::new</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 56 <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span> + 57 <span class="i">$This</span><span class="i">->_InitializeFingerprintsTextFileIO</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 58 + 59 <span class="i">$This</span><span class="i">->_InitializeFingerprintsTextFileIOProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> + 60 + 61 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 62 <span class="s">}</span> + 63 + 64 <span class="c"># Initialize object data...</span> + 65 <span class="c">#</span> +<a name="_InitializeFingerprintsTextFileIO-"></a> 66 <span class="k">sub </span><span class="m">_InitializeFingerprintsTextFileIO</span> <span class="s">{</span> + 67 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 68 + 69 <span class="c"># Fingerprints string data format during read/write...</span> + 70 <span class="c">#</span> + 71 <span class="c"># For file read:</span> + 72 <span class="c">#</span> + 73 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span> + 74 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span> + 75 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span> + 76 <span class="c">#</span> + 77 <span class="c"># Default value: AutoDetect</span> + 78 <span class="c">#</span> + 79 <span class="c"># For file write:</span> + 80 <span class="c">#</span> + 81 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span> + 82 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span> + 83 <span class="c">#</span> + 84 <span class="c"># Default value: undef</span> + 85 <span class="c">#</span> + 86 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="k">undef</span><span class="sc">;</span> + 87 + 88 <span class="c"># For file read:</span> + 89 <span class="c">#</span> + 90 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span> + 91 <span class="c">#</span> + 92 <span class="c"># For file write:</span> + 93 <span class="c">#</span> + 94 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span> + 95 <span class="c"># o Any supported fingerprints object: PathLengthFingerprints, ExtendedConnectivity, and so on.</span> + 96 <span class="c">#</span> + 97 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> + 98 + 99 <span class="c"># Fingepritns string for current line during read/write...</span> + 100 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span> + 101 + 102 <span class="c"># First data line read/write...</span> + 103 <span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>} = <span class="n">1</span><span class="sc">;</span> + 104 + 105 <span class="c"># Current fingerprints string data line number during read/write...</span> + 106 <span class="i">$This</span>->{<span class="w">LineNum</span>} = <span class="n">0</span><span class="sc">;</span> + 107 + 108 <span class="c"># Text line data during read/write...</span> + 109 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="k">undef</span><span class="sc">;</span> + 110 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 111 + 112 <span class="c"># Text file column data during read/write...</span> + 113 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 114 + 115 <span class="c"># Text file delimiter during read/write...</span> + 116 <span class="i">$This</span>->{<span class="w">Delim</span>} = <span class="q">''</span><span class="sc">;</span> + 117 + 118 <span class="c"># Initialize parameters for read...</span> + 119 <span class="i">$This</span><span class="i">->_InitializeFingerprintsTextFileIORead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 120 + 121 <span class="c"># Initialize parameters for write...</span> + 122 <span class="i">$This</span><span class="i">->_InitializeFingerprintsTextFileIOWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 123 + 124 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 125 <span class="s">}</span> + 126 + 127 <span class="c"># Initialize class ...</span> +<a name="_InitializeClass-"></a> 128 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span> + 129 <span class="c">#Class name...</span> + 130 <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span> + 131 + 132 <span class="s">}</span> + 133 + 134 <span class="c"># Initialize object data for reading fingerprints text file...</span> + 135 <span class="c">#</span> +<a name="_InitializeFingerprintsTextFileIORead-"></a> 136 <span class="k">sub </span><span class="m">_InitializeFingerprintsTextFileIORead</span> <span class="s">{</span> + 137 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 138 + 139 <span class="c"># Column ID specification for identification of comound ID or fingerints string</span> + 140 <span class="c"># data column...</span> + 141 <span class="c">#</span> + 142 <span class="c"># ColNum - A valid column number</span> + 143 <span class="c"># ColLabel - A valid column name</span> + 144 <span class="c">#</span> + 145 <span class="i">$This</span>->{<span class="w">ColMode</span>} = <span class="q">'ColNum'</span><span class="sc">;</span> + 146 + 147 <span class="c"># Fingerprints column to use for retrieving fingerprints string data...</span> + 148 <span class="c">#</span> + 149 <span class="c"># Value of AutoDetect implies use first column containing the word Fingerprints in its</span> + 150 <span class="c"># column label to retrieve fingerprints string data. Othwewise, a valid column number</span> + 151 <span class="c"># or column name must be specified based on the value of ColMode.</span> + 152 <span class="c">#</span> + 153 <span class="i">$This</span>->{<span class="w">FingerprintsCol</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> + 154 + 155 <span class="c"># Compound ID column to use for retrieving compound IDs for fingerprints...</span> + 156 <span class="c">#</span> + 157 <span class="c"># Value of AutoDetect implies use first column containing the word CompoundID in its column</span> + 158 <span class="c"># label to retrieve compound IDs or assign seqyentially generated compound IDs. Othwewise,</span> + 159 <span class="c"># a valid column number or column name must be specified based on the value of ColMode.</span> + 160 <span class="c">#</span> + 161 <span class="i">$This</span>->{<span class="w">CompoundIDCol</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> + 162 + 163 <span class="c"># A prefix string used for generating compound IDs like LabelPrefixString<Number> during</span> + 164 <span class="c"># sequential generation of compound IDs. Default value, Cmpd, generates compound IDs</span> + 165 <span class="c"># which look like like Cmpd<Number>.</span> + 166 <span class="c">#</span> + 167 <span class="i">$This</span>->{<span class="w">CompoundIDPrefix</span>} = <span class="q">'Cmpd'</span><span class="sc">;</span> + 168 + 169 <span class="c"># Input delimiter for fingerprints CSV text file. Possible values: comma, semicolon or tab. This</span> + 170 <span class="c"># option is ignored for TSV text file and tab is used as the delimiter.</span> + 171 <span class="c">#</span> + 172 <span class="i">$This</span>->{<span class="w">InDelim</span>} = <span class="q">'comma'</span><span class="sc">;</span> + 173 + 174 <span class="c"># By default, the fingerprints data corresponding to FingerprintsCol is assumed to</span> + 175 <span class="c"># be valid and no validation is performed before generating fingerprints objects...</span> + 176 <span class="c">#</span> + 177 <span class="i">$This</span>->{<span class="w">ValidateData</span>} = <span class="n">1</span><span class="sc">;</span> + 178 + 179 <span class="c"># Level of detail to print during validation of data for invalid or missing data...</span> + 180 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="n">1</span><span class="sc">;</span> + 181 + 182 <span class="c"># Number of missing and invalid fingerprints string data lines...</span> + 183 <span class="i">$This</span>->{<span class="w">NumOfLinesWithMissingData</span>} = <span class="n">0</span><span class="sc">;</span> + 184 <span class="i">$This</span>->{<span class="w">NumOfLinesWithInvalidData</span>} = <span class="n">0</span><span class="sc">;</span> + 185 + 186 <span class="c"># Compound ID for current fingerprints string...</span> + 187 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span> + 188 + 189 <span class="c"># Status of data in fingerprints text file...</span> + 190 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="n">0</span><span class="sc">;</span> + 191 + 192 <span class="i">$This</span>->{<span class="w">ValidCompoundIDCol</span>} = <span class="n">0</span><span class="sc">;</span> + 193 <span class="i">$This</span>->{<span class="w">ValidFingerprintsCol</span>} = <span class="n">0</span><span class="sc">;</span> + 194 + 195 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 196 + 197 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 198 <span class="s">}</span> + 199 + 200 <span class="c"># Initialize object data for writing fingerprints text file...</span> + 201 <span class="c">#</span> +<a name="_InitializeFingerprintsTextFileIOWrite-"></a> 202 <span class="k">sub </span><span class="m">_InitializeFingerprintsTextFileIOWrite</span> <span class="s">{</span> + 203 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 204 + 205 <span class="c"># Fingerprints bit vector string format...</span> + 206 <span class="c">#</span> + 207 <span class="c"># Possible values: BinaryString or HexadecimalString [Default]</span> + 208 <span class="c">#</span> + 209 <span class="c"># Default BitStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat.</span> + 210 <span class="c">#</span> + 211 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span> + 212 + 213 <span class="c"># Bits order in fingerprints bit vector string...</span> + 214 <span class="c">#</span> + 215 <span class="c"># Ascending - First bit in each byte as the lowest bit [Default]</span> + 216 <span class="c"># Descending - First bit in each byte as the highest bit</span> + 217 <span class="c">#</span> + 218 <span class="c"># Default BitsOrder is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder.</span> + 219 <span class="c">#</span> + 220 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="k">undef</span><span class="sc">;</span> + 221 + 222 <span class="c"># Fingerprints vector string format...</span> + 223 <span class="c">#</span> + 224 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span> + 225 <span class="c">#</span> + 226 <span class="c"># Default VectorStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat.</span> + 227 <span class="c"># For fingerprints vector object containing vector NumericalValues, it corresponds to IDsAndValuesString; othwerwise,</span> + 228 <span class="c"># it's set to ValuesString.</span> + 229 <span class="c">#</span> + 230 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span> + 231 + 232 <span class="c"># Delimiter for output fingerprints CSV/TSV file. Possible values: comma, tab, semicolon. This</span> + 233 <span class="c"># option is ignored for TSV text file and tab is used as the delimiter.</span> + 234 <span class="c">#</span> + 235 <span class="i">$This</span>->{<span class="w">OutDelim</span>} = <span class="q">'comma'</span><span class="sc">;</span> + 236 + 237 <span class="c"># Quotes around column values for output fingerprints CSV/TSV text file...</span> + 238 <span class="i">$This</span>->{<span class="w">OutQuote</span>} = <span class="n">1</span><span class="sc">;</span> + 239 + 240 <span class="c"># Overwriting existing file...</span> + 241 <span class="i">$This</span>->{<span class="w">Overwrite</span>} = <span class="n">0</span><span class="sc">;</span> + 242 + 243 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 244 <span class="s">}</span> + 245 + 246 <span class="c"># Initialize object values...</span> +<a name="_InitializeFingerprintsTextFileIOProperties-"></a> 247 <span class="k">sub </span><span class="m">_InitializeFingerprintsTextFileIOProperties</span> <span class="s">{</span> + 248 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 249 + 250 <span class="c"># All other property names and values along with all Set/Get<PropertyName> methods</span> + 251 <span class="c"># are implemented on-demand using ObjectProperty class.</span> + 252 + 253 <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span> + 254 <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span> <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span> + 255 <span class="i">$MethodName</span> = <span class="q">"Set${Name}"</span><span class="sc">;</span> + 256 <span class="i">$This</span><span class="i">->$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span> + 257 <span class="s">}</span> + 258 + 259 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="s">)</span> <span class="s">{</span> + 260 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying file name..."</span><span class="sc">;</span> + 261 <span class="s">}</span> + 262 + 263 <span class="c"># Make sure it's a fingerprints file...</span> + 264 <span class="i">$Name</span> = <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="sc">;</span> + 265 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->IsFingerprintsTextFile</span><span class="s">(</span><span class="i">$Name</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 266 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $Name, doesn't appear to be fingerprints format..."</span><span class="sc">;</span> + 267 <span class="s">}</span> + 268 + 269 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^Read$/i</span><span class="s">)</span> <span class="s">{</span> + 270 <span class="i">$This</span><span class="i">->_InitializeFingerprintsTextFileIOReadProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> + 271 <span class="s">}</span> + 272 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^(Write|Append)$/i</span><span class="s">)</span> <span class="s">{</span> + 273 <span class="i">$This</span><span class="i">->_InitializeFingerprintsTextFileIOWriteProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> + 274 <span class="s">}</span> + 275 + 276 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 277 <span class="s">}</span> + 278 + 279 <span class="c"># Initialize object properties for reading fingerprints text file...</span> + 280 <span class="c">#</span> +<a name="_InitializeFingerprintsTextFileIOReadProperties-"></a> 281 <span class="k">sub </span><span class="m">_InitializeFingerprintsTextFileIOReadProperties</span> <span class="s">{</span> + 282 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 283 + 284 <span class="c"># Set default value for FingerprintsStringMode...</span> + 285 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span> + 286 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> + 287 <span class="s">}</span> + 288 + 289 <span class="i">$This</span><span class="i">->_PrepareForReadingFingerprintsTextFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 290 + 291 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 292 <span class="s">}</span> + 293 + 294 <span class="c"># Initialize object properties for writing fingerprints text file...</span> + 295 <span class="c">#</span> +<a name="_InitializeFingerprintsTextFileIOWriteProperties-"></a> 296 <span class="k">sub </span><span class="m">_InitializeFingerprintsTextFileIOWriteProperties</span> <span class="s">{</span> + 297 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 298 + 299 <span class="c"># Check FingerprintsStringMode value...</span> + 300 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span> + 301 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying FingerprintsStringMode..."</span><span class="sc">;</span> + 302 <span class="s">}</span> + 303 + 304 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} !~ <span class="q">/^(FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span> + 305 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->: Object can't be instantiated: FingerprintsStringMode value, $This->{FingerprintsStringMode}, is not valid; Supported values for write/append: FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span> + 306 <span class="s">}</span> + 307 + 308 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">DataColLabels</span>}<span class="s">)</span> <span class="s">{</span> + 309 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying DataColLabels..."</span><span class="sc">;</span> + 310 <span class="s">}</span> + 311 + 312 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">OutDelim</span>} =~ <span class="q">/semicolon/i</span> && !<span class="i">$This</span>->{<span class="w">OutQuote</span>}<span class="s">)</span> <span class="s">{</span> + 313 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->: Object can't be instantiated: The value specified, $This->{OutQuote}, using \"OutQuote\" is not allowed with semicolon value of \"OutDelim\": Fingerprints string use semicolon as delimiter for various data fields and must be quoted.\n"</span><span class="sc">;</span> + 314 <span class="s">}</span> + 315 + 316 <span class="i">$This</span><span class="i">->_PrepareForWritingFingerprintsTextFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 317 + 318 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 319 <span class="s">}</span> + 320 + 321 <span class="c"># Set FingerprintsStringMode...</span> + 322 <span class="c">#</span> +<a name="SetFingerprintsStringMode-"></a> 323 <span class="k">sub </span><span class="m">SetFingerprintsStringMode</span> <span class="s">{</span> + 324 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 325 + 326 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span> + 327 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span> + 328 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span> + 329 + 330 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(AutoDetect|FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span> + 331 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetFingerprintsStringMode: FingerprintsStringMode value, $Value, is not valid; Supported values: AutoDetect, FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span> + 332 <span class="s">}</span> + 333 + 334 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="i">$Value</span><span class="sc">;</span> + 335 + 336 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 337 <span class="s">}</span> + 338 + 339 <span class="c"># Set ColMode...</span> + 340 <span class="c">#</span> +<a name="SetColMode-"></a> 341 <span class="k">sub </span><span class="m">SetColMode</span> <span class="s">{</span> + 342 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 343 + 344 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(ColNum|ColLabel)$/i</span><span class="s">)</span> <span class="s">{</span> + 345 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetColMode: ColMode value, $Value, is not valid; Supported values: ColNum or ColLabel..."</span><span class="sc">;</span> + 346 <span class="s">}</span> + 347 + 348 <span class="i">$This</span>->{<span class="w">ColMode</span>} = <span class="i">$Value</span><span class="sc">;</span> + 349 + 350 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 351 <span class="s">}</span> + 352 + 353 <span class="c"># Set InDelim...</span> + 354 <span class="c">#</span> +<a name="SetInDelim-"></a> 355 <span class="k">sub </span><span class="m">SetInDelim</span> <span class="s">{</span> + 356 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 357 + 358 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(comma|semicolon|tab)$/i</span><span class="s">)</span> <span class="s">{</span> + 359 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetInDelim: InDelim value, $Value, is not valid; Supported values: comma, semicolon, or tab..."</span><span class="sc">;</span> + 360 <span class="s">}</span> + 361 + 362 <span class="i">$This</span>->{<span class="w">InDelim</span>} = <span class="i">$Value</span><span class="sc">;</span> + 363 + 364 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 365 <span class="s">}</span> + 366 + 367 <span class="c"># Set DetailLevel...</span> + 368 <span class="c">#</span> +<a name="SetDetailLevel-"></a> 369 <span class="k">sub </span><span class="m">SetDetailLevel</span> <span class="s">{</span> + 370 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 371 + 372 <span class="k">if</span> <span class="s">(</span>!<span class="i">TextUtil::IsPositiveInteger</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 373 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetDetailLevel: DetailLevel value, $Value, is not valid; Supported values: > 0..."</span><span class="sc">;</span> + 374 <span class="s">}</span> + 375 + 376 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="i">$Value</span><span class="sc">;</span> + 377 + 378 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 379 <span class="s">}</span> + 380 + 381 <span class="c"># Set BitStringFormat...</span> + 382 <span class="c">#</span> +<a name="SetBitStringFormat-"></a> 383 <span class="k">sub </span><span class="m">SetBitStringFormat</span> <span class="s">{</span> + 384 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 385 + 386 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(BinaryString|HexadecimalString)$/i</span><span class="s">)</span> <span class="s">{</span> + 387 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitStringFormat: BitStringFormat value, $Value, is not valid; Supported values: BinaryString or HexadecimalString..."</span><span class="sc">;</span> + 388 <span class="s">}</span> + 389 + 390 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span> + 391 + 392 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 393 <span class="s">}</span> + 394 + 395 <span class="c"># Set BitsOrder...</span> + 396 <span class="c">#</span> +<a name="SetBitsOrder-"></a> 397 <span class="k">sub </span><span class="m">SetBitsOrder</span> <span class="s">{</span> + 398 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 399 + 400 <span class="c"># Ascending - First bit in each byte as the lowest bit</span> + 401 <span class="c"># Descending - First bit in each byte as the highest bit</span> + 402 <span class="c">#</span> + 403 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(Ascending|Descending)$/i</span><span class="s">)</span> <span class="s">{</span> + 404 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitsOrder: FingerprintsStringMode value, $Value, is not valid; Supported values: Ascending or Descending..."</span><span class="sc">;</span> + 405 <span class="s">}</span> + 406 + 407 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">$Value</span><span class="sc">;</span> + 408 + 409 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 410 <span class="s">}</span> + 411 + 412 <span class="c"># Set VectorStringFormat...</span> + 413 <span class="c">#</span> +<a name="SetVectorStringFormat-"></a> 414 <span class="k">sub </span><span class="m">SetVectorStringFormat</span> <span class="s">{</span> + 415 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 416 + 417 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span> + 418 + 419 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(IDsAndValuesString|IDsAndValuesPairsString|ValuesAndIDsString|ValuesAndIDsPairsString|ValuesString)$/i</span><span class="s">)</span> <span class="s">{</span> + 420 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetVectorStringFormat: FingerprintsStringMode value, $Value, is not valid; Supported values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, or ValuesString..."</span><span class="sc">;</span> + 421 <span class="s">}</span> + 422 + 423 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span> + 424 + 425 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 426 <span class="s">}</span> + 427 + 428 <span class="c"># Set FingerprintsStringMode...</span> + 429 <span class="c">#</span> +<a name="SetOutDelim-"></a> 430 <span class="k">sub </span><span class="m">SetOutDelim</span> <span class="s">{</span> + 431 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 432 + 433 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(comma|tab|semicolon)$/i</span><span class="s">)</span> <span class="s">{</span> + 434 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetOutDelim: OutDelim value, $Value, is not valid; Supported values: comma, tab or semicolon..."</span><span class="sc">;</span> + 435 <span class="s">}</span> + 436 + 437 <span class="i">$This</span>->{<span class="w">OutDelim</span>} = <span class="i">$Value</span><span class="sc">;</span> + 438 + 439 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 440 <span class="s">}</span> + 441 + 442 <span class="c"># Set DataColLabels...</span> + 443 <span class="c">#</span> + 444 <span class="c"># Set output data column labels using:</span> + 445 <span class="c"># o List of column labels</span> + 446 <span class="c"># o Reference to an list of column labels</span> + 447 <span class="c">#</span> +<a name="SetDataColLabels-"></a> 448 <span class="k">sub </span><span class="m">SetDataColLabels</span> <span class="s">{</span> + 449 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 450 <span class="k">my</span><span class="s">(</span><span class="i">$FirstValue</span><span class="cm">,</span> <span class="i">$TypeOfFirstValue</span><span class="s">)</span><span class="sc">;</span> + 451 + 452 <span class="k">if</span> <span class="s">(</span>!<span class="i">@Values</span><span class="s">)</span> <span class="s">{</span> + 453 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_SetDataColLabels: No data column labels specified..."</span><span class="sc">;</span> + 454 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 455 <span class="s">}</span> + 456 + 457 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 458 + 459 <span class="i">$FirstValue</span> = <span class="i">$Values</span>[<span class="n">0</span>]<span class="sc">;</span> + 460 <span class="i">$TypeOfFirstValue</span> = <span class="k">ref</span> <span class="i">$FirstValue</span><span class="sc">;</span> + 461 + 462 <span class="k">if</span> <span class="s">(</span><span class="i">$TypeOfFirstValue</span> =~ <span class="q">/^ARRAY/</span><span class="s">)</span> <span class="s">{</span> + 463 <span class="c"># Initialize using array refernce...</span> + 464 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="cm">,</span> <span class="i">@</span>{<span class="i">$FirstValue</span>}<span class="sc">;</span> + 465 <span class="s">}</span> + 466 <span class="k">else</span> <span class="s">{</span> + 467 <span class="c"># It's a list of values...</span> + 468 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="cm">,</span> <span class="i">@Values</span><span class="sc">;</span> + 469 <span class="s">}</span> + 470 + 471 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 472 <span class="s">}</span> + 473 + 474 <span class="c"># Get column labels or number of column labels in first text line...</span> + 475 <span class="c">#</span> +<a name="GetDataColLabels-"></a> 476 <span class="k">sub </span><span class="m">GetDataColLabels</span> <span class="s">{</span> + 477 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 478 + 479 <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}} <span class="co">:</span> <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="sc">;</span> + 480 <span class="s">}</span> + 481 + 482 <span class="c"># Get words or number of words in current data line...</span> + 483 <span class="c">#</span> +<a name="GetDataLineWords-"></a> 484 <span class="k">sub </span><span class="m">GetDataLineWords</span> <span class="s">{</span> + 485 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 486 + 487 <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}} <span class="co">:</span> <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="sc">;</span> + 488 <span class="s">}</span> + 489 + 490 <span class="c"># Set DataLineWords...</span> + 491 <span class="c">#</span> + 492 <span class="c"># Set data line words using:</span> + 493 <span class="c"># o List of line words</span> + 494 <span class="c"># o Reference to an list of line words</span> + 495 <span class="c">#</span> +<a name="SetDataLineWords-"></a> 496 <span class="k">sub </span><span class="m">SetDataLineWords</span> <span class="s">{</span> + 497 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 498 <span class="k">my</span><span class="s">(</span><span class="i">$FirstValue</span><span class="cm">,</span> <span class="i">$TypeOfFirstValue</span><span class="s">)</span><span class="sc">;</span> + 499 + 500 <span class="k">if</span> <span class="s">(</span>!<span class="i">@Values</span><span class="s">)</span> <span class="s">{</span> + 501 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->SetDataLineWords: No line words specified..."</span><span class="sc">;</span> + 502 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 503 <span class="s">}</span> + 504 + 505 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 506 + 507 <span class="i">$FirstValue</span> = <span class="i">$Values</span>[<span class="n">0</span>]<span class="sc">;</span> + 508 <span class="i">$TypeOfFirstValue</span> = <span class="k">ref</span> <span class="i">$FirstValue</span><span class="sc">;</span> + 509 + 510 <span class="k">if</span> <span class="s">(</span><span class="i">$TypeOfFirstValue</span> =~ <span class="q">/^ARRAY/</span><span class="s">)</span> <span class="s">{</span> + 511 <span class="c"># Initialize using array refernce...</span> + 512 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="cm">,</span> <span class="i">@</span>{<span class="i">$FirstValue</span>}<span class="sc">;</span> + 513 <span class="s">}</span> + 514 <span class="k">else</span> <span class="s">{</span> + 515 <span class="c"># It's a list of values...</span> + 516 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="cm">,</span> <span class="i">@Values</span><span class="sc">;</span> + 517 <span class="s">}</span> + 518 + 519 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 520 <span class="s">}</span> + 521 + 522 <span class="c"># Get fingerprints object for current data line using fingerprints, fingerprints bit-vector</span> + 523 <span class="c"># fingerprints vector object. Fingerprints object correspond to any of supported fingerprints</span> + 524 <span class="c"># objects such as PathLengthFingerprints, ExtendedConnectivity, and so on.</span> + 525 <span class="c">#</span> +<a name="GetFingerprints-"></a> 526 <span class="k">sub </span><span class="m">GetFingerprints</span> <span class="s">{</span> + 527 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 528 + 529 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="sc">;</span> + 530 <span class="s">}</span> + 531 + 532 <span class="c"># Set fingerprints object for current data line...</span> + 533 <span class="c">#</span> +<a name="SetFingerprints-"></a> 534 <span class="k">sub </span><span class="m">SetFingerprints</span> <span class="s">{</span> + 535 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 536 + 537 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span> + 538 + 539 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 540 <span class="s">}</span> + 541 + 542 <span class="c"># Get fingerprints string for current data line...</span> + 543 <span class="c">#</span> +<a name="GetFingerprintsString-"></a> 544 <span class="k">sub </span><span class="m">GetFingerprintsString</span> <span class="s">{</span> + 545 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 546 + 547 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} ? <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span> + 548 <span class="s">}</span> + 549 + 550 <span class="c"># Set fingerprints string for current data line...</span> + 551 <span class="c">#</span> +<a name="SetFingerprintsString-"></a> 552 <span class="k">sub </span><span class="m">SetFingerprintsString</span> <span class="s">{</span> + 553 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 554 + 555 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span> + 556 + 557 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 558 <span class="s">}</span> + 559 + 560 <span class="c"># Does fingerprints text file contain valid data?</span> + 561 <span class="c">#</span> +<a name="IsFingerprintsFileDataValid-"></a> 562 <span class="k">sub </span><span class="m">IsFingerprintsFileDataValid</span> <span class="s">{</span> + 563 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 564 + 565 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">ValidFileData</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 566 <span class="s">}</span> + 567 + 568 <span class="c"># Does current data line contains valid fingerprints object data?</span> + 569 <span class="c">#</span> +<a name="IsFingerprintsDataValid-"></a> 570 <span class="k">sub </span><span class="m">IsFingerprintsDataValid</span> <span class="s">{</span> + 571 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 572 + 573 <span class="k">return</span> <span class="k">defined</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 574 <span class="s">}</span> + 575 + 576 <span class="c"># Read next available fingerprints line, process it and generate appropriate fingerprints</span> + 577 <span class="c"># objects...</span> + 578 <span class="c">#</span> +<a name="Read-"></a> 579 <span class="k">sub </span><span class="m">Read</span> <span class="s">{</span> + 580 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 581 + 582 <span class="c"># Read data line...</span> + 583 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ReadDataLine</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 584 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span> + 585 <span class="s">}</span> + 586 + 587 <span class="c"># No need to process invalid text file with invalid data...</span> + 588 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">ValidFileData</span>}<span class="s">)</span> <span class="s">{</span> + 589 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span> + 590 <span class="i">$This</span>->{<span class="w">NumOfLinesWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span> + 591 <span class="s">}</span> + 592 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 593 <span class="s">}</span> + 594 + 595 <span class="c"># Perform data validation...</span> + 596 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span> + 597 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ValidateReadDataLine</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 598 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 599 <span class="s">}</span> + 600 <span class="s">}</span> + 601 + 602 <span class="c"># Setup fingerprints string after checking again to handle problematic data for</span> + 603 <span class="c"># non-validated data lines...</span> + 604 <span class="c">#</span> + 605 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>} <= <span class="i">$#</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="s">)</span> <span class="s">{</span> + 606 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$This</span>->{<span class="w">DataLineWords</span>}[<span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>}]<span class="sc">;</span> + 607 <span class="s">}</span> + 608 + 609 <span class="c"># Generate fingeprints object...</span> + 610 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 611 + 612 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span> + 613 <span class="i">$This</span><span class="i">->_GenerateCompoundID</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 614 + 615 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 616 <span class="s">}</span> + 617 + 618 <span class="c"># Read next available fingerprints line, process it and generate appropriate fingerprints</span> + 619 <span class="c"># objects...</span> + 620 <span class="c">#</span> +<a name="Next-"></a> 621 <span class="k">sub </span><span class="m">Next</span> <span class="s">{</span> + 622 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 623 + 624 <span class="k">return</span> <span class="i">$This</span><span class="i">->Read</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 625 <span class="s">}</span> + 626 + 627 <span class="c"># Read fingerprints data line line...</span> + 628 <span class="c">#</span> +<a name="_ReadDataLine-"></a> 629 <span class="k">sub </span><span class="m">_ReadDataLine</span> <span class="s">{</span> + 630 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 631 + 632 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>}<span class="s">)</span> <span class="s">{</span> + 633 <span class="i">$This</span><span class="i">->_ProcessFirstDataLineRead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 634 <span class="s">}</span> + 635 + 636 <span class="c"># Initialize data for current line...</span> + 637 <span class="i">$This</span><span class="i">->_InitializeReadDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 638 + 639 <span class="c"># Get next data line...</span> + 640 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="s">)</span><span class="sc">;</span> + 641 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">DataLine</span>}<span class="s">)</span> <span class="s">{</span> + 642 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 643 <span class="s">}</span> + 644 + 645 <span class="c"># Get line words...</span> + 646 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span> + 647 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}} = <span class="i">TextUtil::SplitWords</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataLine</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">Delim</span>}<span class="s">)</span><span class="sc">;</span> + 648 + 649 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 650 <span class="s">}</span> + 651 + 652 <span class="c"># Initialize data line for reading...</span> + 653 <span class="c">#</span> +<a name="_InitializeReadDataLine-"></a> 654 <span class="k">sub </span><span class="m">_InitializeReadDataLine</span> <span class="s">{</span> + 655 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 656 + 657 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span> + 658 + 659 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="k">undef</span><span class="sc">;</span> + 660 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 661 + 662 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> + 663 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span> + 664 + 665 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 666 <span class="s">}</span> + 667 + 668 <span class="c"># Validate fingerprints string data line...</span> + 669 <span class="c">#</span> +<a name="_ValidateReadDataLine-"></a> 670 <span class="k">sub </span><span class="m">_ValidateReadDataLine</span> <span class="s">{</span> + 671 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 672 + 673 <span class="c"># Check for missing data...</span> + 674 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>} > <span class="i">$#</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="s">)</span> <span class="s">{</span> + 675 <span class="c"># Missing data...</span> + 676 <span class="i">$This</span>->{<span class="w">NumOfLinesWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span> + 677 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span> + 678 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains no fingerprints data: $This->{DataLine}..."</span><span class="sc">;</span> + 679 <span class="s">}</span> + 680 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span> + 681 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains no fingerprints data..."</span><span class="sc">;</span> + 682 <span class="s">}</span> + 683 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 684 <span class="s">}</span> + 685 + 686 <span class="c"># Check for invalid data...</span> + 687 <span class="k">my</span><span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="cm">,</span> <span class="i">$FingerprintsColNum</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="sc">;</span> + 688 + 689 <span class="i">$InvalidFingerprintsData</span> = <span class="n">0</span><span class="sc">;</span> + 690 <span class="i">$FingerprintsColNum</span> = <span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>}<span class="sc">;</span> + 691 + 692 <span class="k">if</span> <span class="s">(</span><span class="i">Fingerprints::FingerprintsStringUtil::AreFingerprintsStringValuesValid</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataLineWords</span>}[<span class="i">$FingerprintsColNum</span>]<span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 693 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringTypeAndDescription</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataLineWords</span>}[<span class="i">$FingerprintsColNum</span>]<span class="s">)</span><span class="sc">;</span> + 694 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} !~ <span class="q">/^$FingerprintsType$/i</span> || <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} !~ <span class="q">/^$FingerprintsDescription$/i</span><span class="s">)</span> <span class="s">{</span> + 695 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span> + 696 <span class="s">}</span> + 697 <span class="s">}</span> + 698 <span class="k">else</span> <span class="s">{</span> + 699 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span> + 700 <span class="s">}</span> + 701 + 702 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span> <span class="s">{</span> + 703 <span class="i">$This</span>->{<span class="w">NumOfLinesWithInvalidData</span>} += <span class="n">1</span><span class="sc">;</span> + 704 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span> + 705 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains invalid fingerprints data: $This->{DataLine}..."</span><span class="sc">;</span> + 706 <span class="s">}</span> + 707 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span> + 708 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains invalid fingerprints data..."</span><span class="sc">;</span> + 709 <span class="s">}</span> + 710 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 711 <span class="s">}</span> + 712 + 713 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 714 <span class="s">}</span> + 715 + 716 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span> +<a name="_GenerateCompoundID-"></a> 717 <span class="k">sub </span><span class="m">_GenerateCompoundID</span> <span class="s">{</span> + 718 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 719 <span class="k">my</span><span class="s">(</span><span class="i">$CompoundID</span><span class="s">)</span><span class="sc">;</span> + 720 + 721 <span class="i">$CompoundID</span> = <span class="q">''</span><span class="sc">;</span> + 722 + 723 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">UseSequentialCompoundIDs</span>} || <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDColNum</span>} > <span class="i">$#</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 724 <span class="k">my</span><span class="s">(</span><span class="i">$CompoundNum</span><span class="s">)</span><span class="sc">;</span> + 725 + 726 <span class="i">$CompoundNum</span> = <span class="i">$This</span>->{<span class="w">LineNum</span>} - <span class="n">1</span><span class="sc">;</span> + 727 <span class="i">$CompoundID</span> = <span class="q">"$This->{CompoundIDPrefix}${CompoundNum}"</span><span class="sc">;</span> + 728 <span class="s">}</span> + 729 <span class="k">else</span> <span class="s">{</span> + 730 <span class="i">$CompoundID</span> = <span class="i">$This</span>->{<span class="w">DataLineWords</span>}[<span class="i">$This</span>->{<span class="w">CompoundIDColNum</span>}]<span class="sc">;</span> + 731 <span class="s">}</span> + 732 + 733 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="i">$CompoundID</span><span class="sc">;</span> + 734 + 735 <span class="c"># Set fingerprints ID...</span> + 736 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span> + 737 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="i">->SetID</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundID</span>}<span class="s">)</span><span class="sc">;</span> + 738 <span class="s">}</span> + 739 + 740 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 741 <span class="s">}</span> + 742 + 743 <span class="c"># Process first read...</span> + 744 <span class="c">#</span> +<a name="_ProcessFirstDataLineRead-"></a> 745 <span class="k">sub </span><span class="m">_ProcessFirstDataLineRead</span> <span class="s">{</span> + 746 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 747 + 748 <span class="c"># Skip column label line...</span> + 749 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span> + 750 <span class="i">TextUtil::GetTextLine</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="s">)</span><span class="sc">;</span> + 751 + 752 <span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>} = <span class="n">0</span><span class="sc">;</span> + 753 + 754 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 755 <span class="s">}</span> + 756 + 757 <span class="c"># Get ready for reading fingerprints text file...</span> + 758 <span class="c">#</span> +<a name="_PrepareForReadingFingerprintsTextFileData-"></a> 759 <span class="k">sub </span><span class="m">_PrepareForReadingFingerprintsTextFileData</span> <span class="s">{</span> + 760 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 761 + 762 <span class="c"># Retrieve text file columns information....</span> + 763 <span class="i">$This</span><span class="i">->_RetrieveTextFileColData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 764 + 765 <span class="c"># Validate columns information...</span> + 766 <span class="i">$This</span><span class="i">->_ValidateReadCompoundIDCol</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 767 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsCol</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 768 + 769 <span class="c"># Validate fingeprints string mode information...</span> + 770 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidFingerprintsCol</span>}<span class="s">)</span> <span class="s">{</span> + 771 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsStringMode</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 772 <span class="s">}</span> + 773 + 774 <span class="c"># Set status of text file data...</span> + 775 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidCompoundIDCol</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsCol</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 776 + 777 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 778 <span class="s">}</span> + 779 + 780 <span class="c"># Retrieve information about columns and fingerprints string...</span> + 781 <span class="c">#</span> +<a name="_RetrieveTextFileColData-"></a> 782 <span class="k">sub </span><span class="m">_RetrieveTextFileColData</span> <span class="s">{</span> + 783 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 784 <span class="k">my</span><span class="s">(</span><span class="i">$TextFile</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="cm">,</span> <span class="i">$Line</span><span class="cm">,</span> <span class="i">$ColLabel</span><span class="cm">,</span> <span class="i">$ColNum</span><span class="cm">,</span> <span class="i">@ColLabels</span><span class="s">)</span><span class="sc">;</span> + 785 + 786 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 787 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 788 + 789 <span class="i">$TextFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span> + 790 + 791 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$TextFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 792 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $TextFile, doesn't exist..."</span><span class="sc">;</span> + 793 <span class="s">}</span> + 794 + 795 <span class="i">$FileDir</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileName</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileExt</span> = <span class="q">""</span><span class="sc">;</span> + 796 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">FileUtil::ParseFileName</span><span class="s">(</span><span class="i">$TextFile</span><span class="s">)</span><span class="sc">;</span> + 797 + 798 <span class="i">$InDelim</span> = <span class="s">(</span><span class="i">$FileExt</span> =~ <span class="q">/^tsv$/i</span><span class="s">)</span> ? <span class="q">"\t"</span> <span class="co">:</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">InDelim</span>} =~ <span class="q">/semicolon/i</span> ? <span class="q">"\;"</span> <span class="co">:</span> <span class="q">"\,"</span><span class="s">)</span><span class="sc">;</span> + 799 <span class="i">$This</span>->{<span class="w">Delim</span>} = <span class="i">$InDelim</span><span class="sc">;</span> + 800 + 801 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span> <span class="w">TEXTFILE</span><span class="cm">,</span> <span class="q">"$TextFile"</span><span class="s">)</span> <span class="s">{</span> + 802 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: Couldn't open input text file $TextFile: $! ..."</span><span class="sc">;</span> + 803 <span class="s">}</span> + 804 + 805 <span class="c"># Get column label line...</span> + 806 <span class="i">$Line</span> = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span>\<span class="i">*TEXTFILE</span><span class="s">)</span><span class="sc">;</span> + 807 + 808 <span class="k">close</span> <span class="w">TEXTFILE</span><span class="sc">;</span> + 809 + 810 <span class="i">@ColLabels</span> = <span class="i">TextUtil::SplitWords</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="s">)</span><span class="sc">;</span> + 811 + 812 <span class="c"># Set text file columns info....</span> + 813 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="cm">,</span> <span class="i">@ColLabels</span><span class="sc">;</span> + 814 + 815 <span class="k">for</span> <span class="i">$ColNum</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#ColLabels</span><span class="s">)</span> <span class="s">{</span> + 816 <span class="i">$ColLabel</span> = <span class="i">$ColLabels</span>[<span class="i">$ColNum</span>]<span class="sc">;</span> + 817 <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$ColLabel</span>} = <span class="i">$ColNum</span><span class="sc">;</span> + 818 <span class="s">}</span> + 819 + 820 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 821 <span class="s">}</span> + 822 + 823 <span class="c"># Validate compound ID column information...</span> + 824 <span class="c">#</span> +<a name="_ValidateReadCompoundIDCol-"></a> 825 <span class="k">sub </span><span class="m">_ValidateReadCompoundIDCol</span> <span class="s">{</span> + 826 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 827 <span class="k">my</span><span class="s">(</span><span class="i">$CompoundIDCol</span><span class="cm">,</span> <span class="i">$CompoundIDColNum</span><span class="cm">,</span> <span class="i">$UseSequentialCompoundIDs</span><span class="cm">,</span> <span class="i">$ColFound</span><span class="cm">,</span> <span class="i">$ColLabel</span><span class="cm">,</span> <span class="i">$ColNum</span><span class="s">)</span><span class="sc">;</span> + 828 + 829 <span class="i">$This</span>->{<span class="w">ValidCompoundIDCol</span>} = <span class="n">0</span><span class="sc">;</span> + 830 <span class="i">$This</span>->{<span class="w">CompoundIDColNum</span>} = <span class="k">undef</span><span class="sc">;</span> + 831 <span class="i">$This</span>->{<span class="w">UseSequentialCompoundIDs</span>} = <span class="n">0</span><span class="sc">;</span> + 832 + 833 <span class="i">$CompoundIDCol</span> = <span class="i">$This</span>->{<span class="w">CompoundIDCol</span>}<span class="sc">;</span> + 834 + 835 <span class="i">$UseSequentialCompoundIDs</span> = <span class="n">0</span><span class="sc">;</span> + 836 <span class="i">$CompoundIDColNum</span> = <span class="q">''</span><span class="sc">;</span> + 837 + 838 <span class="k">if</span> <span class="s">(</span><span class="i">$CompoundIDCol</span> =~ <span class="q">/^AutoDetect$/i</span><span class="s">)</span> <span class="s">{</span> + 839 <span class="c"># First column containing the word CompoundID in its label or sequential generation...</span> + 840 + 841 <span class="i">$ColFound</span> = <span class="n">0</span><span class="sc">;</span> + 842 <span class="j">COLLABEL:</span> <span class="k">for</span> <span class="i">$ColLabel</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="s">)</span> <span class="s">{</span> + 843 <span class="k">if</span> <span class="s">(</span><span class="i">$ColLabel</span> =~ <span class="q">/CompoundID/i</span><span class="s">)</span> <span class="s">{</span> + 844 <span class="i">$ColFound</span> = <span class="n">1</span><span class="sc">;</span> + 845 <span class="i">$ColNum</span> = <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$ColLabel</span>}<span class="sc">;</span> + 846 <span class="k">last</span> <span class="j">COLLABEL</span><span class="sc">;</span> + 847 <span class="s">}</span> + 848 <span class="s">}</span> + 849 <span class="k">if</span> <span class="s">(</span><span class="i">$ColFound</span><span class="s">)</span> <span class="s">{</span> + 850 <span class="i">$CompoundIDColNum</span> = <span class="i">$ColNum</span><span class="sc">;</span> + 851 <span class="s">}</span> + 852 <span class="k">else</span> <span class="s">{</span> + 853 <span class="i">$UseSequentialCompoundIDs</span> = <span class="n">1</span><span class="sc">;</span> + 854 <span class="s">}</span> + 855 <span class="s">}</span> + 856 <span class="k">else</span> <span class="s">{</span> + 857 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ColMode</span>} =~ <span class="q">/^ColNum$/i</span><span class="s">)</span> <span class="s">{</span> + 858 <span class="c"># Is it a valid column number?</span> + 859 <span class="k">if</span> <span class="s">(</span><span class="i">$CompoundIDCol</span> > <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="s">)</span> <span class="s">{</span> + 860 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundIDCol: Column number, $CompoundIDCol, specified using CompoundIDCol doesn't exist..."</span><span class="sc">;</span> + 861 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 862 <span class="s">}</span> + 863 <span class="i">$CompoundIDColNum</span> = <span class="i">$CompoundIDCol</span> - <span class="n">1</span><span class="sc">;</span> + 864 <span class="s">}</span> + 865 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ColMode</span>} =~ <span class="q">/^ColLabel$/i</span><span class="s">)</span> <span class="s">{</span> + 866 <span class="c"># Does this column exists?</span> + 867 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$CompoundIDCol</span>}<span class="s">)</span> <span class="s">{</span> + 868 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundIDCol: Column name, $CompoundIDCol, specified using CompoundIDCol doesn't exist..."</span><span class="sc">;</span> + 869 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 870 <span class="s">}</span> + 871 <span class="i">$CompoundIDColNum</span> = <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$CompoundIDCol</span>}<span class="sc">;</span> + 872 <span class="s">}</span> + 873 <span class="s">}</span> + 874 + 875 <span class="i">$This</span>->{<span class="w">ValidCompoundIDCol</span>} = <span class="n">1</span><span class="sc">;</span> + 876 <span class="i">$This</span>->{<span class="w">CompoundIDColNum</span>} = <span class="i">$CompoundIDColNum</span><span class="sc">;</span> + 877 <span class="i">$This</span>->{<span class="w">UseSequentialCompoundIDs</span>} = <span class="i">$UseSequentialCompoundIDs</span><span class="sc">;</span> + 878 + 879 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 880 <span class="s">}</span> + 881 + 882 <span class="c"># Validate fingerprints string column information...</span> + 883 <span class="c">#</span> +<a name="_ValidateReadFingerprintsCol-"></a> 884 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsCol</span> <span class="s">{</span> + 885 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 886 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsColNum</span><span class="cm">,</span> <span class="i">$FingerprintsCol</span><span class="cm">,</span> <span class="i">$ColFound</span><span class="cm">,</span> <span class="i">$ColLabel</span><span class="cm">,</span> <span class="i">$ColNum</span><span class="s">)</span><span class="sc">;</span> + 887 + 888 <span class="i">$This</span>->{<span class="w">ValidFingerprintsCol</span>} = <span class="n">0</span><span class="sc">;</span> + 889 <span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>} = <span class="k">undef</span><span class="sc">;</span> + 890 + 891 <span class="i">$FingerprintsColNum</span> = <span class="k">undef</span><span class="sc">;</span> + 892 <span class="i">$FingerprintsCol</span> = <span class="i">$This</span>->{<span class="w">FingerprintsCol</span>}<span class="sc">;</span> + 893 + 894 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsCol</span> =~ <span class="q">/^AutoDetect$/i</span><span class="s">)</span> <span class="s">{</span> + 895 <span class="c"># First column containing the word Fingerprints in its label...</span> + 896 + 897 <span class="i">$ColFound</span> = <span class="n">0</span><span class="sc">;</span> + 898 <span class="j">COLLABEL:</span> <span class="k">for</span> <span class="i">$ColLabel</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="s">)</span> <span class="s">{</span> + 899 <span class="k">if</span> <span class="s">(</span><span class="i">$ColLabel</span> =~ <span class="q">/Fingerprints/i</span><span class="s">)</span> <span class="s">{</span> + 900 <span class="i">$ColFound</span> = <span class="n">1</span><span class="sc">;</span> + 901 <span class="i">$ColNum</span> = <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$ColLabel</span>}<span class="sc">;</span> + 902 <span class="k">last</span> <span class="j">COLLABEL</span><span class="sc">;</span> + 903 <span class="s">}</span> + 904 <span class="s">}</span> + 905 <span class="k">if</span> <span class="s">(</span>!<span class="i">$ColFound</span><span class="s">)</span> <span class="s">{</span> + 906 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsCol: Column label containing \"Fingerprints\" string in its name doesn't exist..."</span><span class="sc">;</span> + 907 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 908 <span class="s">}</span> + 909 <span class="i">$FingerprintsColNum</span> = <span class="i">$ColNum</span><span class="sc">;</span> + 910 <span class="s">}</span> + 911 <span class="k">else</span> <span class="s">{</span> + 912 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ColMode</span>} =~ <span class="q">/^ColNum$/i</span><span class="s">)</span> <span class="s">{</span> + 913 <span class="c"># Is it a valid column number?</span> + 914 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsCol</span> > <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="s">)</span> <span class="s">{</span> + 915 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsCol: Column number, $FingerprintsCol, specified using FingerprintsCol doesn't exist..."</span><span class="sc">;</span> + 916 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 917 <span class="s">}</span> + 918 <span class="i">$FingerprintsColNum</span> = <span class="i">$FingerprintsCol</span> - <span class="n">1</span><span class="sc">;</span> + 919 <span class="s">}</span> + 920 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ColMode</span>} =~ <span class="q">/^ColLabel$/i</span><span class="s">)</span> <span class="s">{</span> + 921 <span class="c"># Does this column exists?</span> + 922 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$FingerprintsCol</span>}<span class="s">)</span> <span class="s">{</span> + 923 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsCol: Column label, $FingerprintsCol, specified using FingerprintsCol doesn't exist..."</span><span class="sc">;</span> + 924 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 925 <span class="s">}</span> + 926 <span class="i">$FingerprintsColNum</span> = <span class="i">$This</span>->{<span class="w">DataColLabelToNumMap</span>}{<span class="i">$FingerprintsCol</span>}<span class="sc">;</span> + 927 <span class="s">}</span> + 928 <span class="s">}</span> + 929 + 930 <span class="i">$This</span>->{<span class="w">ValidFingerprintsCol</span>} = <span class="n">1</span><span class="sc">;</span> + 931 <span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>} = <span class="i">$FingerprintsColNum</span><span class="sc">;</span> + 932 + 933 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 934 <span class="s">}</span> + 935 + 936 <span class="c"># Validate fingerprints string mode information...</span> + 937 <span class="c">#</span> +<a name="_ValidateReadFingerprintsStringMode-"></a> 938 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsStringMode</span> <span class="s">{</span> + 939 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 940 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsBitVectorStringMode</span><span class="cm">,</span> <span class="i">$FingerprintsVectorStringMode</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringType</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringDescription</span><span class="cm">,</span> <span class="i">$TextFile</span><span class="cm">,</span> <span class="i">$Line</span><span class="cm">,</span> <span class="i">$FingerprintsColNum</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">@LineWords</span><span class="s">)</span><span class="sc">;</span> + 941 + 942 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 943 + 944 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 945 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 946 + 947 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="q">''</span><span class="sc">;</span> + 948 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="q">''</span><span class="sc">;</span> + 949 + 950 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span> + 951 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span> + 952 + 953 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">''</span><span class="sc">;</span> + 954 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="q">''</span><span class="sc">;</span> + 955 + 956 <span class="i">$TextFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span> + 957 + 958 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span> <span class="w">TEXTFILE</span><span class="cm">,</span> <span class="q">"$TextFile"</span><span class="s">)</span> <span class="s">{</span> + 959 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: Couldn't open input text file $TextFile: $! ..."</span><span class="sc">;</span> + 960 <span class="s">}</span> + 961 + 962 <span class="c"># Skip column label line...</span> + 963 <span class="i">$Line</span> = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span>\<span class="i">*TEXTFILE</span><span class="s">)</span><span class="sc">;</span> + 964 + 965 <span class="c"># First first fingerprints data line...</span> + 966 <span class="i">$Line</span> = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span>\<span class="i">*TEXTFILE</span><span class="s">)</span><span class="sc">;</span> + 967 + 968 <span class="k">close</span> <span class="w">TEXTFILE</span><span class="sc">;</span> + 969 + 970 <span class="c"># Get first fingerprints type and description...</span> + 971 <span class="i">$InDelim</span> = <span class="i">$This</span>->{<span class="w">Delim</span>}<span class="sc">;</span> + 972 <span class="i">@LineWords</span> = <span class="i">TextUtil::SplitWords</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="s">)</span><span class="sc">;</span> + 973 + 974 <span class="i">$FingerprintsColNum</span> = <span class="i">$This</span>->{<span class="w">FingerprintsColNum</span>}<span class="sc">;</span> + 975 + 976 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringTypeAndDescription</span><span class="s">(</span><span class="i">$LineWords</span>[<span class="i">$FingerprintsColNum</span>]<span class="s">)</span><span class="sc">;</span> + 977 + 978 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span> + 979 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> !~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> + 980 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, doesn't match value, FingerprintsBitVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span> + 981 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 982 <span class="s">}</span> + 983 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> + 984 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsBitVector'</span><span class="sc">;</span> + 985 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span> + 986 <span class="s">}</span> + 987 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span> + 988 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> !~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> + 989 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, doesn't match value, FingerprintsVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span> + 990 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 991 <span class="s">}</span> + 992 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> + 993 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsVector'</span><span class="sc">;</span> + 994 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span> + 995 <span class="s">}</span> + 996 <span class="k">else</span> <span class="s">{</span> + 997 <span class="c"># AutoDetect mode...</span> + 998 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> + 999 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> +1000 <span class="s">}</span> +1001 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> +1002 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> +1003 <span class="s">}</span> +1004 <span class="k">else</span> <span class="s">{</span> +1005 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, identified during, AutoDetect, value of \"FingerprintsStringMode\" is not valid; Supported fingerprints types: FingerprintBitVector or FingerprintsVector..."</span><span class="sc">;</span> +1006 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> +1007 <span class="s">}</span> +1008 <span class="i">$FirstFingerprintsStringType</span> = <span class="i">$FingerprintsType</span><span class="sc">;</span> +1009 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span> +1010 <span class="s">}</span> +1011 +1012 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">1</span><span class="sc">;</span> +1013 +1014 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="i">$FingerprintsBitVectorStringMode</span><span class="sc">;</span> +1015 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="i">$FingerprintsVectorStringMode</span><span class="sc">;</span> +1016 +1017 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="i">$FirstFingerprintsStringType</span><span class="sc">;</span> +1018 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="i">$FirstFingerprintsStringDescription</span><span class="sc">;</span> +1019 +1020 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> +1021 <span class="s">}</span> +1022 +1023 <span class="c"># Write fingerprints string generated from specified fingerprints, fingerprints-bit vector, or</span> +1024 <span class="c"># fingerprints vector object and other data to text file...</span> +1025 <span class="c">#</span> +<a name="WriteFingerprints-"></a>1026 <span class="k">sub </span><span class="m">WriteFingerprints</span> <span class="s">{</span> +1027 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">@DataColValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1028 +1029 <span class="c"># Initialize data for current line...</span> +1030 <span class="i">$This</span><span class="i">->_InitializeWriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1031 +1032 <span class="c"># Set fingerprints object...</span> +1033 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span> +1034 +1035 <span class="c"># Generate fingerprints string...</span> +1036 <span class="i">$This</span><span class="i">->_GenerateFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1037 +1038 <span class="c"># Set data line words...</span> +1039 <span class="i">$This</span><span class="i">->SetDataLineWords</span><span class="s">(</span><span class="i">@DataColValues</span><span class="s">)</span><span class="sc">;</span> +1040 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="sc">;</span> +1041 +1042 <span class="c"># Write data line..</span> +1043 <span class="i">$This</span><span class="i">->_WriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1044 +1045 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1046 <span class="s">}</span> +1047 +1048 <span class="c"># Write fingerprints string and other data to text file...</span> +1049 <span class="c">#</span> +1050 <span class="c"># Note:</span> +1051 <span class="c"># o FingerprintsStringMode, BitStringFormat, BitsOrder, VectorStringFormat values</span> +1052 <span class="c"># are ignored during writing of fingerprints and it's written to the file as it is.</span> +1053 <span class="c">#</span> +1054 <span class="c">#</span> +<a name="WriteFingerprintsString-"></a>1055 <span class="k">sub </span><span class="m">WriteFingerprintsString</span> <span class="s">{</span> +1056 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="cm">,</span> <span class="i">@DataColValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1057 +1058 <span class="c"># Initialize data for current line...</span> +1059 <span class="i">$This</span><span class="i">->_InitializeWriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1060 +1061 <span class="c"># Set fingerprints string...</span> +1062 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span> +1063 +1064 <span class="c"># Generate fingerprints object...</span> +1065 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1066 +1067 <span class="c"># Set data line words...</span> +1068 <span class="i">$This</span><span class="i">->SetDataLineWords</span><span class="s">(</span><span class="i">@DataColValues</span><span class="s">)</span><span class="sc">;</span> +1069 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="sc">;</span> +1070 +1071 <span class="c"># Write data line..</span> +1072 <span class="i">$This</span><span class="i">->_WriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1073 +1074 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1075 <span class="s">}</span> +1076 +1077 <span class="c"># Initialize data line for reading...</span> +1078 <span class="c">#</span> +<a name="_InitializeWriteDataLine-"></a>1079 <span class="k">sub </span><span class="m">_InitializeWriteDataLine</span> <span class="s">{</span> +1080 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1081 +1082 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="k">undef</span><span class="sc">;</span> +1083 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1084 +1085 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> +1086 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span> +1087 +1088 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1089 <span class="s">}</span> +1090 +1091 <span class="c"># Write fingerprints data line line...</span> +1092 <span class="c">#</span> +<a name="_WriteDataLine-"></a>1093 <span class="k">sub </span><span class="m">_WriteDataLine</span> <span class="s">{</span> +1094 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1095 <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="cm">,</span> <span class="i">$Line</span><span class="s">)</span><span class="sc">;</span> +1096 +1097 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>}<span class="s">)</span> <span class="s">{</span> +1098 <span class="i">$This</span><span class="i">->_ProcessFirstDataLineWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1099 <span class="s">}</span> +1100 +1101 <span class="c"># Write out line words...</span> +1102 <span class="i">$Line</span> = <span class="i">TextUtil::JoinWords</span><span class="s">(</span>\<span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataLineWords</span>}}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">Delim</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span> +1103 +1104 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span> +1105 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span> +1106 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"$Line\n"</span><span class="sc">;</span> +1107 +1108 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="i">$Line</span><span class="sc">;</span> +1109 +1110 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1111 <span class="s">}</span> +1112 +1113 <span class="c"># Process first write...</span> +1114 <span class="c">#</span> +<a name="_ProcessFirstDataLineWrite-"></a>1115 <span class="k">sub </span><span class="m">_ProcessFirstDataLineWrite</span> <span class="s">{</span> +1116 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1117 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span> +1118 +1119 <span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>} = <span class="n">0</span><span class="sc">;</span> +1120 +1121 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^Write$/i</span><span class="s">)</span> <span class="s">{</span> +1122 <span class="c"># Write out column label line...</span> +1123 <span class="i">$Line</span> = <span class="i">TextUtil::JoinWords</span><span class="s">(</span>\<span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DataColLabels</span>}}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">Delim</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span> +1124 +1125 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span> +1126 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span> +1127 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"$Line\n"</span><span class="sc">;</span> +1128 <span class="s">}</span> +1129 +1130 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1131 <span class="s">}</span> +1132 +1133 <span class="c"># Get ready for writing fingerprints text file...</span> +1134 <span class="c">#</span> +<a name="_PrepareForWritingFingerprintsTextFileData-"></a>1135 <span class="k">sub </span><span class="m">_PrepareForWritingFingerprintsTextFileData</span> <span class="s">{</span> +1136 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1137 <span class="k">my</span><span class="s">(</span><span class="i">$TextFile</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$OutDelim</span><span class="s">)</span><span class="sc">;</span> +1138 +1139 <span class="i">$TextFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span> +1140 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">Overwrite</span>}<span class="s">)</span> <span class="s">{</span> +1141 <span class="k">if</span> <span class="s">(</span><span class="k">-e</span> <span class="i">$TextFile</span><span class="s">)</span> <span class="s">{</span> +1142 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $TextFile, already exist. Use overwrite option..."</span><span class="sc">;</span> +1143 <span class="s">}</span> +1144 <span class="s">}</span> +1145 +1146 <span class="c"># Set up delimiter for writing file...</span> +1147 +1148 <span class="i">$FileDir</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileName</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileExt</span> = <span class="q">""</span><span class="sc">;</span> +1149 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">FileUtil::ParseFileName</span><span class="s">(</span><span class="i">$TextFile</span><span class="s">)</span><span class="sc">;</span> +1150 +1151 <span class="i">$OutDelim</span> = <span class="s">(</span><span class="i">$FileExt</span> =~ <span class="q">/^tsv$/i</span><span class="s">)</span> ? <span class="q">"\t"</span> <span class="co">:</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">OutDelim</span>} =~ <span class="q">/semicolon/i</span> ? <span class="q">"\;"</span> <span class="co">:</span> <span class="q">"\,"</span><span class="s">)</span><span class="sc">;</span> +1152 <span class="i">$This</span>->{<span class="w">Delim</span>} = <span class="i">$OutDelim</span><span class="sc">;</span> +1153 +1154 <span class="c"># Setup FingerprintsStringMode status...</span> +1155 +1156 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> +1157 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> +1158 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span> +1159 +1160 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span> +1161 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span> +1162 <span class="s">}</span> +1163 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span> +1164 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span> +1165 <span class="s">}</span> +1166 +1167 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} || <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> +1168 +1169 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1170 <span class="i">$This</span><span class="i">->_SetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1171 <span class="i">$This</span><span class="i">->_SetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1172 <span class="s">}</span> +1173 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1174 <span class="i">$This</span><span class="i">->_SetDefaultVectorStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1175 <span class="s">}</span> +1176 +1177 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1178 <span class="s">}</span> +1179 +1180 <span class="c"># Set default value for bit string format...</span> +1181 <span class="c">#</span> +<a name="_SetDefaultBitStringFormat-"></a>1182 <span class="k">sub </span><span class="m">_SetDefaultBitStringFormat</span> <span class="s">{</span> +1183 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1184 +1185 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="s">)</span> <span class="s">{</span> +1186 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1187 <span class="s">}</span> +1188 +1189 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1190 <span class="s">}</span> +1191 +1192 <span class="c"># Set default value for bit string format...</span> +1193 <span class="c">#</span> +<a name="_SetDefaultBitsOrder-"></a>1194 <span class="k">sub </span><span class="m">_SetDefaultBitsOrder</span> <span class="s">{</span> +1195 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1196 +1197 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span> <span class="s">{</span> +1198 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1199 <span class="s">}</span> +1200 +1201 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1202 <span class="s">}</span> +1203 +1204 <span class="c"># Set default value for vector string format...</span> +1205 <span class="c">#</span> +<a name="_SetDefaultVectorStringFormat-"></a>1206 <span class="k">sub </span><span class="m">_SetDefaultVectorStringFormat</span> <span class="s">{</span> +1207 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1208 +1209 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} && <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span> +1210 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span><span class="sc">;</span> +1211 <span class="s">}</span> +1212 +1213 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1214 <span class="s">}</span> +1215 +1216 <span class="c"># Generate fingerprints object using current fingerprints string...</span> +1217 <span class="c">#</span> +<a name="_GenerateFingerprintsObject-"></a>1218 <span class="k">sub </span><span class="m">_GenerateFingerprintsObject</span> <span class="s">{</span> +1219 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1220 +1221 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> +1222 +1223 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span> +1224 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1225 <span class="s">}</span> +1226 +1227 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1228 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsBitVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span> +1229 <span class="s">}</span> +1230 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1231 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span> +1232 <span class="s">}</span> +1233 <span class="k">else</span> <span class="s">{</span> +1234 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span> +1235 <span class="s">}</span> +1236 +1237 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1238 <span class="s">}</span> +1239 +1240 <span class="c"># Generate fingerprints string using current fingerprints object...</span> +1241 <span class="c">#</span> +<a name="_GenerateFingerprintsString-"></a>1242 <span class="k">sub </span><span class="m">_GenerateFingerprintsString</span> <span class="s">{</span> +1243 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1244 +1245 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="q">''</span><span class="sc">;</span> +1246 +1247 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span> +1248 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1249 <span class="s">}</span> +1250 +1251 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1252 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span><span class="sc">;</span> +1253 <span class="s">}</span> +1254 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1255 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>}<span class="s">)</span><span class="sc">;</span> +1256 <span class="s">}</span> +1257 +1258 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1259 <span class="s">}</span> +1260 +1261 <span class="c"># Is it a fingerprints file?</span> +<a name="IsFingerprintsTextFile-"></a>1262 <span class="k">sub </span><span class="m">IsFingerprintsTextFile ($;$)</span> <span class="s">{</span> +1263 <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1264 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$Status</span><span class="s">)</span><span class="sc">;</span> +1265 +1266 <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> && <span class="s">(</span><span class="i">_IsFingerprintsTextFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> +1267 <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span> +1268 <span class="s">}</span> +1269 <span class="k">else</span> <span class="s">{</span> +1270 <span class="i">$FileName</span> = <span class="i">$FirstParameter</span><span class="sc">;</span> +1271 <span class="s">}</span> +1272 +1273 <span class="c"># Check file extension...</span> +1274 <span class="i">$Status</span> = <span class="i">FileUtil::CheckFileType</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="q">"csv tsv"</span><span class="s">)</span><span class="sc">;</span> +1275 +1276 <span class="k">return</span> <span class="i">$Status</span><span class="sc">;</span> +1277 <span class="s">}</span> +1278 +1279 <span class="c"># Is it a FingerprintsTextFileIO object?</span> +<a name="_IsFingerprintsTextFileIO-"></a>1280 <span class="k">sub </span><span class="m">_IsFingerprintsTextFileIO</span> <span class="s">{</span> +1281 <span class="k">my</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1282 +1283 <span class="k">return</span> <span class="s">(</span><span class="i">Scalar::Util::blessed</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> && <span class="i">$Object</span><span class="i">->isa</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> +1284 <span class="s">}</span> +1285 +<a name="EOF-"></a></pre> +<p> </p> +<br /> +<center> +<img src="../../../images/h2o2.png"> +</center> +</body> +</html>