Mercurial > repos > deepakjadmin > mayatool3_test3
diff mayachemtools/docs/modules/html/code/FingerprintsSDFileIO.html @ 0:73ae111cf86f draft
Uploaded
| author | deepakjadmin |
|---|---|
| date | Wed, 20 Jan 2016 11:55:01 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mayachemtools/docs/modules/html/code/FingerprintsSDFileIO.html Wed Jan 20 11:55:01 2016 -0500 @@ -0,0 +1,1163 @@ +<html> +<head> +<title>MayaChemTools:Code:FileIO::FingerprintsSDFileIO.pm</title> +<meta http-equiv="content-type" content="text/html;charset=utf-8"> +<link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css"> +</head> +<body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> +<br/> +<center> +<a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> +</center> +<br/> +<pre> +<a name="package-FileIO::FingerprintsSDFileIO-"></a> 1 <span class="k">package </span><span class="i">FileIO::FingerprintsSDFileIO</span><span class="sc">;</span> + 2 <span class="c">#</span> + 3 <span class="c"># $RCSfile: FingerprintsSDFileIO.pm,v $</span> + 4 <span class="c"># $Date: 2015/02/28 20:48:43 $</span> + 5 <span class="c"># $Revision: 1.18 $</span> + 6 <span class="c">#</span> + 7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span> + 8 <span class="c">#</span> + 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span> + 10 <span class="c">#</span> + 11 <span class="c"># This file is part of MayaChemTools.</span> + 12 <span class="c">#</span> + 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span> + 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span> + 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span> + 16 <span class="c"># later version.</span> + 17 <span class="c">#</span> + 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span> + 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span> + 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span> + 21 <span class="c"># details.</span> + 22 <span class="c">#</span> + 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span> + 24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span> + 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span> + 26 <span class="c"># Boston, MA, 02111-1307, USA.</span> + 27 <span class="c">#</span> + 28 + 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span> + 30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span> + 31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span> + 32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 33 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 34 <span class="k">use</span> <span class="w">FileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 35 <span class="k">use</span> <span class="w">SDFileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 36 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsStringUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 37 <span class="k">use</span> <span class="w">FileIO::FileIO</span><span class="sc">;</span> + 38 + 39 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span> + 40 + 41 <span class="i">@ISA</span> = <span class="q">qw(FileIO::FileIO Exporter)</span><span class="sc">;</span> + 42 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span> + 43 <span class="i">@EXPORT_OK</span> = <span class="q">qw(IsFingerprintsSDFile)</span><span class="sc">;</span> + 44 + 45 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span> <span class="cm">=></span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span> + 46 + 47 <span class="c"># Setup class variables...</span> + 48 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span> + 49 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 50 + 51 <span class="c"># Class constructor...</span> +<a name="new-"></a> 52 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span> + 53 <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 54 + 55 <span class="c"># Initialize object...</span> + 56 <span class="k">my</span> <span class="i">$This</span> = <span class="i">$Class</span><span class="i">->SUPER::new</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 57 <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span> + 58 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIO</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 59 + 60 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> + 61 + 62 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 63 <span class="s">}</span> + 64 + 65 <span class="c"># Initialize object data...</span> + 66 <span class="c">#</span> +<a name="_InitializeFingerprintsSDFileIO-"></a> 67 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIO</span> <span class="s">{</span> + 68 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 69 + 70 <span class="c"># Fingerprints string data format during read/write...</span> + 71 <span class="c">#</span> + 72 <span class="c"># For file read:</span> + 73 <span class="c">#</span> + 74 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span> + 75 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span> + 76 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span> + 77 <span class="c">#</span> + 78 <span class="c"># Default value: AutoDetect</span> + 79 <span class="c">#</span> + 80 <span class="c"># For file write:</span> + 81 <span class="c">#</span> + 82 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span> + 83 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span> + 84 <span class="c">#</span> + 85 <span class="c"># Default value: undef</span> + 86 <span class="c">#</span> + 87 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="k">undef</span><span class="sc">;</span> + 88 + 89 <span class="c"># For file read:</span> + 90 <span class="c">#</span> + 91 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span> + 92 <span class="c">#</span> + 93 <span class="c"># For file write:</span> + 94 <span class="c">#</span> + 95 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span> + 96 <span class="c"># o Any supported fingerprints object: PathLengthFingerprints, ExtendedConnectivity, and so on.</span> + 97 <span class="c">#</span> + 98 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> + 99 + 100 <span class="c"># Fingerprints SD file data field label during read/write</span> + 101 <span class="c">#</span> + 102 <span class="c"># For file read:</span> + 103 <span class="c">#</span> + 104 <span class="c"># Value of AutoDetect implies use first data field containing the word Fingerprints in its</span> + 105 <span class="c"># data field label to retrieve fingerprints string data. Othwewise, a valid data field name</span> + 106 <span class="c"># must be specified.</span> + 107 <span class="c">#</span> + 108 <span class="c"># For file write:</span> + 109 <span class="c">#</span> + 110 <span class="c"># Data field label to use for writing fingerprints string. Default: Fingerprints</span> + 111 <span class="c">#</span> + 112 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="k">undef</span><span class="sc">;</span> + 113 + 114 <span class="c"># Fingepritns string for current line during read/write...</span> + 115 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span> + 116 + 117 <span class="c"># First compound data string read/write...</span> + 118 <span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>} = <span class="n">1</span><span class="sc">;</span> + 119 + 120 <span class="c"># Current fingerprints string data compound number during read/write...</span> + 121 <span class="i">$This</span>->{<span class="w">CompoundNum</span>} = <span class="n">0</span><span class="sc">;</span> + 122 + 123 <span class="c"># Compound data string during read/write...</span> + 124 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="k">undef</span><span class="sc">;</span> + 125 + 126 <span class="c"># Initialize parameters for read...</span> + 127 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIORead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 128 + 129 <span class="c"># Initialize parameters for write...</span> + 130 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 131 + 132 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 133 <span class="s">}</span> + 134 + 135 <span class="c"># Initialize class ...</span> +<a name="_InitializeClass-"></a> 136 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span> + 137 <span class="c">#Class name...</span> + 138 <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span> + 139 + 140 <span class="s">}</span> + 141 + 142 <span class="c"># Initialize object data for reading fingerprints SD file...</span> + 143 <span class="c">#</span> +<a name="_InitializeFingerprintsSDFileIORead-"></a> 144 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIORead</span> <span class="s">{</span> + 145 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 146 + 147 <span class="c"># Compound ID mode to use for retrieving compound IDs for fingerprints...</span> + 148 <span class="c">#</span> + 149 <span class="c"># Specify how to generate compound IDs: use a SD file datafield value; use molname line from</span> + 150 <span class="c"># SD file; generate a sequential ID with specific prefix; use combination of both MolName and</span> + 151 <span class="c"># LabelPrefix with usage of LabelPrefix values for empty molname lines.</span> + 152 <span class="c">#</span> + 153 <span class="c"># Possible values: DataField, MolName, LabelPrefix, or MolNameOrLabelPrefix. Default: LabelPrefix.</span> + 154 <span class="c">#</span> + 155 <span class="c"># For MolNameAndLabelPrefix value of CompoundIDMode, molname line in SD file takes precedence over</span> + 156 <span class="c"># sequential compound IDs generated using LabelPrefix and only empty molname values are replaced</span> + 157 <span class="c"># with sequential compound IDs.</span> + 158 <span class="c">#</span> + 159 <span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} = <span class="q">'LabelPrefix'</span><span class="sc">;</span> + 160 + 161 <span class="c">#</span> + 162 <span class="c"># Compound ID data field label name whose value is used as compound ID during DatafField value of</span> + 163 <span class="c"># CompoundIDMode</span> + 164 <span class="c">#</span> + 165 <span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>} = <span class="k">undef</span><span class="sc">;</span> + 166 + 167 <span class="c"># A prefix string used for generating compound IDs like LabelPrefixString<Number> during LabelPrefix</span> + 168 <span class="c"># or MolNameOrLabelPrefix value of CompoundIDMode. Default value, Cmpd, generates compound IDs</span> + 169 <span class="c"># which look like Cmpd<Number>.</span> + 170 <span class="c">#</span> + 171 <span class="i">$This</span>->{<span class="w">CompoundIDPrefix</span>} = <span class="q">'Cmpd'</span><span class="sc">;</span> + 172 + 173 <span class="c"># By default, the fingerprints data corresponding to FingerprintsCol is assumed to</span> + 174 <span class="c"># be valid and no validation is performed before generating fingerprints objects...</span> + 175 <span class="c">#</span> + 176 <span class="i">$This</span>->{<span class="w">ValidateData</span>} = <span class="n">1</span><span class="sc">;</span> + 177 + 178 <span class="c"># Level of detail to print during validation of data for invalid or missing data...</span> + 179 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="n">1</span><span class="sc">;</span> + 180 + 181 <span class="c"># Number of missing and invalid fingerprints string data compound strings...</span> + 182 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithMissingData</span>} = <span class="n">0</span><span class="sc">;</span> + 183 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithInvalidData</span>} = <span class="n">0</span><span class="sc">;</span> + 184 + 185 <span class="c"># Compound ID for current fingerprints string...</span> + 186 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span> + 187 + 188 <span class="c"># Compound data field labels and values map for current compound data...</span> + 189 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 190 + 191 <span class="c"># Status of data in fingerprints SD file...</span> + 192 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="n">0</span><span class="sc">;</span> + 193 + 194 <span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} = <span class="n">0</span><span class="sc">;</span> + 195 <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} = <span class="n">0</span><span class="sc">;</span> + 196 + 197 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 198 + 199 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 200 <span class="s">}</span> + 201 + 202 <span class="c"># Initialize object data for writing fingerprints SD file...</span> + 203 <span class="c">#</span> +<a name="_InitializeFingerprintsSDFileIOWrite-"></a> 204 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOWrite</span> <span class="s">{</span> + 205 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 206 + 207 <span class="c"># Fingerprints bit vector string format...</span> + 208 <span class="c">#</span> + 209 <span class="c"># Possible values: BinaryString or HexadecimalString [Default]</span> + 210 <span class="c">#</span> + 211 <span class="c"># Default BitStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat.</span> + 212 <span class="c">#</span> + 213 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span> + 214 + 215 <span class="c"># Bits order in fingerprints bit vector string...</span> + 216 <span class="c">#</span> + 217 <span class="c"># Ascending - First bit in each byte as the lowest bit [Default]</span> + 218 <span class="c"># Descending - First bit in each byte as the highest bit</span> + 219 <span class="c">#</span> + 220 <span class="c"># Default BitsOrder is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder.</span> + 221 <span class="c">#</span> + 222 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="k">undef</span><span class="sc">;</span> + 223 + 224 <span class="c"># Fingerprints vector string format...</span> + 225 <span class="c">#</span> + 226 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span> + 227 <span class="c">#</span> + 228 <span class="c"># Default VectorStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat.</span> + 229 <span class="c"># For fingerprints vector object containing vector NumericalValues, it corresponds to IDsAndValuesString; othwerwise,</span> + 230 <span class="c"># it's set to ValuesString.</span> + 231 <span class="c">#</span> + 232 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span> + 233 + 234 <span class="c"># Overwriting existing file...</span> + 235 <span class="i">$This</span>->{<span class="w">Overwrite</span>} = <span class="n">0</span><span class="sc">;</span> + 236 + 237 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 238 <span class="s">}</span> + 239 + 240 <span class="c"># Initialize object values...</span> +<a name="_InitializeFingerprintsSDFileIOProperties-"></a> 241 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOProperties</span> <span class="s">{</span> + 242 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 243 + 244 <span class="c"># All other property names and values along with all Set/Get<PropertyName> methods</span> + 245 <span class="c"># are implemented on-demand using ObjectProperty class.</span> + 246 + 247 <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span> + 248 <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span> <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span> + 249 <span class="i">$MethodName</span> = <span class="q">"Set${Name}"</span><span class="sc">;</span> + 250 <span class="i">$This</span><span class="i">->$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span> + 251 <span class="s">}</span> + 252 + 253 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="s">)</span> <span class="s">{</span> + 254 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying file name..."</span><span class="sc">;</span> + 255 <span class="s">}</span> + 256 + 257 <span class="c"># Make sure it's a fingerprints file...</span> + 258 <span class="i">$Name</span> = <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="sc">;</span> + 259 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->IsFingerprintsSDFile</span><span class="s">(</span><span class="i">$Name</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 260 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $Name, doesn't appear to be fingerprints format..."</span><span class="sc">;</span> + 261 <span class="s">}</span> + 262 + 263 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^Read$/i</span><span class="s">)</span> <span class="s">{</span> + 264 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOReadProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> + 265 <span class="s">}</span> + 266 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^(Write|Append)$/i</span><span class="s">)</span> <span class="s">{</span> + 267 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOWriteProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> + 268 <span class="s">}</span> + 269 + 270 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 271 <span class="s">}</span> + 272 + 273 <span class="c"># Initialize object properties for reading fingerprints SD file...</span> + 274 <span class="c">#</span> +<a name="_InitializeFingerprintsSDFileIOReadProperties-"></a> 275 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOReadProperties</span> <span class="s">{</span> + 276 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 277 + 278 <span class="c"># Set default value for FingerprintsStringMode...</span> + 279 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span> + 280 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> + 281 <span class="s">}</span> + 282 + 283 <span class="c"># Set default value for FingerprintsFieldLabel...</span> + 284 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span> + 285 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> + 286 <span class="s">}</span> + 287 + 288 <span class="c"># Check compound ID data field...</span> + 289 <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^DataField$/i</span><span class="s">)</span> && <span class="s">(</span>!<span class="k">defined</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>}<span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 290 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->: Object can't be instantiated: Compound ID data field lable must be specifed using \"CompoundIDFieldLabel\" during \"DataField\" value of \"CompoundIDMode\"..."</span><span class="sc">;</span> + 291 <span class="s">}</span> + 292 + 293 <span class="i">$This</span><span class="i">->_PrepareForReadingFingerprintsSDFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 294 + 295 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 296 <span class="s">}</span> + 297 + 298 <span class="c"># Initialize object properties for writing fingerprints SD file...</span> + 299 <span class="c">#</span> +<a name="_InitializeFingerprintsSDFileIOWriteProperties-"></a> 300 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOWriteProperties</span> <span class="s">{</span> + 301 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 302 + 303 <span class="c"># Check FingerprintsStringMode value...</span> + 304 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span> + 305 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying FingerprintsStringMode..."</span><span class="sc">;</span> + 306 <span class="s">}</span> + 307 + 308 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} !~ <span class="q">/^(FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span> + 309 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->: Object can't be instantiated: FingerprintsStringMode value, $This->{FingerprintsStringMode}, is not valid; Supported values for write/append: FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span> + 310 <span class="s">}</span> + 311 + 312 <span class="c"># Set default value for FingerprintsFieldLabel...</span> + 313 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span> + 314 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="q">'Fingerprints'</span><span class="sc">;</span> + 315 <span class="s">}</span> + 316 + 317 <span class="i">$This</span><span class="i">->_PrepareForWritingFingerprintsSDFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 318 + 319 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 320 <span class="s">}</span> + 321 + 322 <span class="c"># Set FingerprintsStringMode...</span> + 323 <span class="c">#</span> +<a name="SetFingerprintsStringMode-"></a> 324 <span class="k">sub </span><span class="m">SetFingerprintsStringMode</span> <span class="s">{</span> + 325 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 326 + 327 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span> + 328 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span> + 329 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span> + 330 + 331 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(AutoDetect|FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span> + 332 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetFingerprintsStringMode: FingerprintsStringMode value, $Value, is not valid; Supported values: AutoDetect, FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span> + 333 <span class="s">}</span> + 334 + 335 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="i">$Value</span><span class="sc">;</span> + 336 + 337 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 338 <span class="s">}</span> + 339 + 340 <span class="c"># Set CompoundIDMode...</span> + 341 <span class="c">#</span> +<a name="SetCompoundIDMode-"></a> 342 <span class="k">sub </span><span class="m">SetCompoundIDMode</span> <span class="s">{</span> + 343 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 344 + 345 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(DataField|MolName|LabelPrefix|MolNameOrLabelPrefix)$/i</span><span class="s">)</span> <span class="s">{</span> + 346 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetFingerprintsStringMode: CompoundIDMode value, $Value, is not valid; Supported values: DataField, MolName, LabelPrefix, or MolNameOrLabelPrefix..."</span><span class="sc">;</span> + 347 <span class="s">}</span> + 348 + 349 <span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} = <span class="i">$Value</span><span class="sc">;</span> + 350 + 351 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 352 <span class="s">}</span> + 353 + 354 <span class="c"># Set DetailLevel...</span> + 355 <span class="c">#</span> +<a name="SetDetailLevel-"></a> 356 <span class="k">sub </span><span class="m">SetDetailLevel</span> <span class="s">{</span> + 357 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 358 + 359 <span class="k">if</span> <span class="s">(</span>!<span class="i">TextUtil::IsPositiveInteger</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 360 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetDetailLevel: DetailLevel value, $Value, is not valid; Supported values: > 0..."</span><span class="sc">;</span> + 361 <span class="s">}</span> + 362 + 363 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="i">$Value</span><span class="sc">;</span> + 364 + 365 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 366 <span class="s">}</span> + 367 + 368 <span class="c"># Set BitStringFormat...</span> + 369 <span class="c">#</span> +<a name="SetBitStringFormat-"></a> 370 <span class="k">sub </span><span class="m">SetBitStringFormat</span> <span class="s">{</span> + 371 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 372 + 373 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(BinaryString|HexadecimalString)$/i</span><span class="s">)</span> <span class="s">{</span> + 374 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitStringFormat: BitStringFormat value, $Value, is not valid; Supported values: BinaryString or HexadecimalString..."</span><span class="sc">;</span> + 375 <span class="s">}</span> + 376 + 377 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span> + 378 + 379 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 380 <span class="s">}</span> + 381 + 382 <span class="c"># Set BitsOrder...</span> + 383 <span class="c">#</span> +<a name="SetBitsOrder-"></a> 384 <span class="k">sub </span><span class="m">SetBitsOrder</span> <span class="s">{</span> + 385 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 386 + 387 <span class="c"># Ascending - First bit in each byte as the lowest bit</span> + 388 <span class="c"># Descending - First bit in each byte as the highest bit</span> + 389 <span class="c">#</span> + 390 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(Ascending|Descending)$/i</span><span class="s">)</span> <span class="s">{</span> + 391 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitsOrder: FingerprintsStringMode value, $Value, is not valid; Supported values: Ascending or Descending..."</span><span class="sc">;</span> + 392 <span class="s">}</span> + 393 + 394 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">$Value</span><span class="sc">;</span> + 395 + 396 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 397 <span class="s">}</span> + 398 + 399 <span class="c"># Set VectorStringFormat...</span> + 400 <span class="c">#</span> +<a name="SetVectorStringFormat-"></a> 401 <span class="k">sub </span><span class="m">SetVectorStringFormat</span> <span class="s">{</span> + 402 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 403 + 404 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span> + 405 + 406 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(IDsAndValuesString|IDsAndValuesPairsString|ValuesAndIDsString|ValuesAndIDsPairsString|ValuesString)$/i</span><span class="s">)</span> <span class="s">{</span> + 407 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetVectorStringFormat: FingerprintsStringMode value, $Value, is not valid; Supported values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, or ValuesString..."</span><span class="sc">;</span> + 408 <span class="s">}</span> + 409 + 410 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span> + 411 + 412 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 413 <span class="s">}</span> + 414 + 415 <span class="c"># Get compound string for current compound with optional removal of fingerprints data..</span> + 416 <span class="c">#</span> +<a name="GetCompoundString-"></a> 417 <span class="k">sub </span><span class="m">GetCompoundString</span> <span class="s">{</span> + 418 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$RemoveFingerprintsData</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 419 + 420 <span class="i">$RemoveFingerprintsData</span> = <span class="k">defined</span> <span class="i">$RemoveFingerprintsData</span> ? <span class="i">$RemoveFingerprintsData</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 421 + 422 <span class="k">if</span> <span class="s">(</span><span class="i">$RemoveFingerprintsData</span> && <span class="i">$This</span><span class="i">->_IsFingerprintsDataPresentInCompoundString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 423 <span class="k">return</span> <span class="i">SDFileUtil::RemoveCmpdDataHeaderLabelAndValue</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span> + 424 <span class="s">}</span> + 425 + 426 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span> + 427 <span class="s">}</span> + 428 + 429 <span class="c"># Set compound string for current compound..</span> + 430 <span class="c">#</span> +<a name="SetCompoundString-"></a> 431 <span class="k">sub </span><span class="m">SetCompoundString</span> <span class="s">{</span> + 432 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$CompoundString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 433 + 434 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">$CompoundString</span><span class="sc">;</span> + 435 + 436 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 437 <span class="s">}</span> + 438 + 439 <span class="c"># Get fingerprints object for current compound using fingerprints, fingerprints bit-vector</span> + 440 <span class="c"># fingerprints vector object. Fingerprints object correspond to any of supported fingerprints</span> + 441 <span class="c"># objects such as PathLengthFingerprints, ExtendedConnectivity, and so on.</span> + 442 <span class="c">#</span> +<a name="GetFingerprints-"></a> 443 <span class="k">sub </span><span class="m">GetFingerprints</span> <span class="s">{</span> + 444 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 445 + 446 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="sc">;</span> + 447 <span class="s">}</span> + 448 + 449 <span class="c"># Set fingerprints object for current compound...</span> + 450 <span class="c">#</span> +<a name="SetFingerprints-"></a> 451 <span class="k">sub </span><span class="m">SetFingerprints</span> <span class="s">{</span> + 452 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 453 + 454 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span> + 455 + 456 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 457 <span class="s">}</span> + 458 + 459 <span class="c"># Get fingerprints string for current compound...</span> + 460 <span class="c">#</span> +<a name="GetFingerprintsString-"></a> 461 <span class="k">sub </span><span class="m">GetFingerprintsString</span> <span class="s">{</span> + 462 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 463 + 464 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} ? <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span> + 465 <span class="s">}</span> + 466 + 467 <span class="c"># Set fingerprints string for current compound...</span> + 468 <span class="c">#</span> +<a name="SetFingerprintsString-"></a> 469 <span class="k">sub </span><span class="m">SetFingerprintsString</span> <span class="s">{</span> + 470 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 471 + 472 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span> + 473 + 474 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 475 <span class="s">}</span> + 476 + 477 <span class="c"># Does fingerprints SD file contain valid data?</span> + 478 <span class="c">#</span> +<a name="IsFingerprintsFileDataValid-"></a> 479 <span class="k">sub </span><span class="m">IsFingerprintsFileDataValid</span> <span class="s">{</span> + 480 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 481 + 482 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">ValidFileData</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 483 <span class="s">}</span> + 484 + 485 <span class="c"># Does current compound contains valid fingerprints object data?</span> + 486 <span class="c">#</span> +<a name="IsFingerprintsDataValid-"></a> 487 <span class="k">sub </span><span class="m">IsFingerprintsDataValid</span> <span class="s">{</span> + 488 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 489 + 490 <span class="k">return</span> <span class="k">defined</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 491 <span class="s">}</span> + 492 + 493 <span class="c"># Read next available compound data string, process it and generate appropriate fingerprints</span> + 494 <span class="c"># objects...</span> + 495 <span class="c">#</span> +<a name="Read-"></a> 496 <span class="k">sub </span><span class="m">Read</span> <span class="s">{</span> + 497 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 498 + 499 <span class="c"># Read compound data string...</span> + 500 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ReadCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 501 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span> + 502 <span class="s">}</span> + 503 + 504 <span class="c"># No need to process invalid SD file with invalid data...</span> + 505 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">ValidFileData</span>}<span class="s">)</span> <span class="s">{</span> + 506 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span> + 507 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span> + 508 <span class="s">}</span> + 509 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 510 <span class="s">}</span> + 511 + 512 <span class="c"># Perform data validation...</span> + 513 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span> + 514 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ValidateReadCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 515 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 516 <span class="s">}</span> + 517 <span class="s">}</span> + 518 + 519 <span class="c"># Setup fingerprints string after checking again to handle problematic data for</span> + 520 <span class="c"># non-validated compound string data...</span> + 521 <span class="c">#</span> + 522 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span> + 523 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span> + 524 <span class="k">if</span> <span class="s">(</span><span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span> + 525 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="sc">;</span> + 526 <span class="s">}</span> + 527 + 528 <span class="c"># Generate fingeprints object...</span> + 529 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 530 + 531 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span> + 532 <span class="i">$This</span><span class="i">->_GenerateCompoundID</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 533 + 534 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 535 <span class="s">}</span> + 536 + 537 <span class="c"># Read next available compound data string, process it and generate appropriate fingerprints</span> + 538 <span class="c"># objects...</span> + 539 <span class="c">#</span> +<a name="Next-"></a> 540 <span class="k">sub </span><span class="m">Next</span> <span class="s">{</span> + 541 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 542 + 543 <span class="k">return</span> <span class="i">$This</span><span class="i">->Read</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 544 <span class="s">}</span> + 545 + 546 <span class="c"># Read compound data string...</span> + 547 <span class="c">#</span> +<a name="_ReadCompoundDataString-"></a> 548 <span class="k">sub </span><span class="m">_ReadCompoundDataString</span> <span class="s">{</span> + 549 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 550 <span class="k">my</span><span class="s">(</span><span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span> + 551 + 552 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>}<span class="s">)</span> <span class="s">{</span> + 553 <span class="i">$This</span><span class="i">->_ProcessFirstCompoundDataStringRead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 554 <span class="s">}</span> + 555 + 556 <span class="c"># Initialize data for current compound data string...</span> + 557 <span class="i">$This</span><span class="i">->_InitializeReadCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 558 + 559 <span class="c"># Get next compound data line...</span> + 560 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">SDFileUtil::ReadCmpdString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="s">)</span><span class="sc">;</span> + 561 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="s">)</span> <span class="s">{</span> + 562 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 563 <span class="s">}</span> + 564 + 565 <span class="i">$This</span>->{<span class="w">CompoundNum</span>} += <span class="n">1</span><span class="sc">;</span> + 566 + 567 <span class="c"># Set up data field labels and values...</span> + 568 <span class="i">@CmpdLines</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span> + 569 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}} = <span class="i">SDFileUtil::GetCmpdDataHeaderLabelsAndValues</span><span class="s">(</span>\<span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span> + 570 + 571 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 572 <span class="s">}</span> + 573 + 574 <span class="c"># Initialize compound data string for reading...</span> + 575 <span class="c">#</span> +<a name="_InitializeReadCompoundDataString-"></a> 576 <span class="k">sub </span><span class="m">_InitializeReadCompoundDataString</span> <span class="s">{</span> + 577 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 578 + 579 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span> + 580 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="k">undef</span><span class="sc">;</span> + 581 + 582 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 583 + 584 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> + 585 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span> + 586 + 587 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 588 <span class="s">}</span> + 589 + 590 <span class="c"># Validate compound data string containing fingerprints data...</span> + 591 <span class="c">#</span> +<a name="_ValidateReadCompoundDataString-"></a> 592 <span class="k">sub </span><span class="m">_ValidateReadCompoundDataString</span> <span class="s">{</span> + 593 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 594 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span> + 595 + 596 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span> + 597 + 598 <span class="c"># Check for missing data...</span> + 599 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span> + 600 <span class="c"># Missing data...</span> + 601 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span> + 602 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span> + 603 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains no fingerprints data: $This->{CompoundString}..."</span><span class="sc">;</span> + 604 <span class="s">}</span> + 605 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span> + 606 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains no fingerprints data..."</span><span class="sc">;</span> + 607 <span class="s">}</span> + 608 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 609 <span class="s">}</span> + 610 + 611 <span class="c"># Check for invalid data...</span> + 612 <span class="k">my</span><span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="sc">;</span> + 613 + 614 <span class="i">$InvalidFingerprintsData</span> = <span class="n">0</span><span class="sc">;</span> + 615 + 616 <span class="k">if</span> <span class="s">(</span><span class="i">Fingerprints::FingerprintsStringUtil::AreFingerprintsStringValuesValid</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 617 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringTypeAndDescription</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span> + 618 <span class="k">if</span> <span class="s">(</span><span class="k">defined</span><span class="s">(</span><span class="i">$FingerprintsType</span><span class="s">)</span> && <span class="k">defined</span><span class="s">(</span><span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 619 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} !~ <span class="q">/^$FingerprintsType$/i</span> || <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} !~ <span class="q">/^$FingerprintsDescription$/i</span><span class="s">)</span> <span class="s">{</span> + 620 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span> + 621 <span class="s">}</span> + 622 <span class="s">}</span> + 623 <span class="k">else</span> <span class="s">{</span> + 624 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span> + 625 <span class="s">}</span> + 626 <span class="s">}</span> + 627 <span class="k">else</span> <span class="s">{</span> + 628 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span> + 629 <span class="s">}</span> + 630 + 631 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span> <span class="s">{</span> + 632 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithInvalidData</span>} += <span class="n">1</span><span class="sc">;</span> + 633 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span> + 634 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains invalid fingerprints data: $This->{DataLine}..."</span><span class="sc">;</span> + 635 <span class="s">}</span> + 636 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span> + 637 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains invalid fingerprints data..."</span><span class="sc">;</span> + 638 <span class="s">}</span> + 639 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 640 <span class="s">}</span> + 641 + 642 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 643 <span class="s">}</span> + 644 + 645 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span> +<a name="_GenerateCompoundID-"></a> 646 <span class="k">sub </span><span class="m">_GenerateCompoundID</span> <span class="s">{</span> + 647 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 648 <span class="k">my</span><span class="s">(</span><span class="i">$CompoundID</span><span class="cm">,</span> <span class="i">$MolName</span><span class="s">)</span><span class="sc">;</span> + 649 + 650 <span class="i">$CompoundID</span> = <span class="q">''</span><span class="sc">;</span> + 651 + 652 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^LabelPrefix$/i</span><span class="s">)</span> <span class="s">{</span> + 653 <span class="i">$CompoundID</span> = <span class="q">"$This->{CompoundIDPrefix}$This->{CompoundNum}"</span><span class="sc">;</span> + 654 <span class="s">}</span> + 655 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^DataField$/i</span><span class="s">)</span> <span class="s">{</span> + 656 <span class="k">my</span><span class="s">(</span><span class="i">$SpecifiedDataField</span><span class="s">)</span><span class="sc">;</span> + 657 <span class="i">$SpecifiedDataField</span> = <span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>}<span class="sc">;</span> + 658 <span class="i">$CompoundID</span> = <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$SpecifiedDataField</span>} ? <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$SpecifiedDataField</span>} <span class="co">:</span> <span class="q">''</span><span class="sc">;</span> + 659 <span class="s">}</span> + 660 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^MolNameOrLabelPrefix$/i</span><span class="s">)</span> <span class="s">{</span> + 661 <span class="s">(</span><span class="i">$MolName</span><span class="s">)</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span> + 662 <span class="i">$CompoundID</span> = <span class="i">TextUtil::IsNotEmpty</span><span class="s">(</span><span class="i">$MolName</span><span class="s">)</span> ? <span class="i">$MolName</span> <span class="co">:</span> <span class="q">"$This->{CompoundIDPrefix}$This->{CompoundNum}"</span><span class="sc">;</span> + 663 <span class="s">}</span> + 664 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^MolName$/i</span><span class="s">)</span> <span class="s">{</span> + 665 <span class="s">(</span><span class="i">$MolName</span><span class="s">)</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span> + 666 <span class="i">$CompoundID</span> = <span class="i">$MolName</span><span class="sc">;</span> + 667 <span class="s">}</span> + 668 + 669 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="i">$CompoundID</span><span class="sc">;</span> + 670 + 671 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 672 <span class="s">}</span> + 673 + 674 <span class="c"># Process first compound data string read...</span> + 675 <span class="c">#</span> +<a name="_ProcessFirstCompoundDataStringRead-"></a> 676 <span class="k">sub </span><span class="m">_ProcessFirstCompoundDataStringRead</span> <span class="s">{</span> + 677 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 678 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span> + 679 + 680 <span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>} = <span class="n">0</span><span class="sc">;</span> + 681 + 682 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 683 <span class="s">}</span> + 684 + 685 <span class="c"># Get ready for reading fingerprints SD file...</span> + 686 <span class="c">#</span> +<a name="_PrepareForReadingFingerprintsSDFileData-"></a> 687 <span class="k">sub </span><span class="m">_PrepareForReadingFingerprintsSDFileData</span> <span class="s">{</span> + 688 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 689 + 690 <span class="c"># Retrieve SD file data fields information....</span> + 691 <span class="i">$This</span><span class="i">->_RetrieveSDFileDataFields</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 692 + 693 <span class="c"># Validate compound and fingerprints field information...</span> + 694 <span class="i">$This</span><span class="i">->_ValidateReadCompoundIDField</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 695 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsField</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 696 + 697 <span class="c"># Validate fingeprints string mode information...</span> + 698 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>}<span class="s">)</span> <span class="s">{</span> + 699 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsStringMode</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 700 <span class="s">}</span> + 701 + 702 <span class="c"># Set status of SD file data...</span> + 703 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 704 + 705 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 706 <span class="s">}</span> + 707 + 708 <span class="c"># Retrieve information data fields and fingerprints string...</span> + 709 <span class="c">#</span> +<a name="_RetrieveSDFileDataFields-"></a> 710 <span class="k">sub </span><span class="m">_RetrieveSDFileDataFields</span> <span class="s">{</span> + 711 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 712 <span class="k">my</span><span class="s">(</span><span class="i">$SDFile</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="cm">,</span> <span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span> + 713 + 714 <span class="i">$SDFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span> + 715 + 716 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$SDFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 717 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $SDFile, doesn't exist..."</span><span class="sc">;</span> + 718 <span class="s">}</span> + 719 + 720 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span> <span class="w">SDFILE</span><span class="cm">,</span> <span class="q">"$SDFile"</span><span class="s">)</span> <span class="s">{</span> + 721 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: Couldn't open input SD file $SDFile: $! ..."</span><span class="sc">;</span> + 722 <span class="s">}</span> + 723 <span class="i">$CmpdString</span> = <span class="i">SDFileUtil::ReadCmpdString</span><span class="s">(</span>\<span class="i">*SDFILE</span><span class="s">)</span><span class="sc">;</span> + 724 <span class="k">close</span> <span class="w">SDFILE</span><span class="sc">;</span> + 725 + 726 <span class="c"># Set up data field labels and values for first compound string data...</span> + 727 <span class="i">@CmpdLines</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="sc">;</span> + 728 + 729 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 730 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}} = <span class="i">SDFileUtil::GetCmpdDataHeaderLabelsAndValues</span><span class="s">(</span>\<span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span> + 731 + 732 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 733 <span class="s">}</span> + 734 + 735 <span class="c"># Validate compound ID field information...</span> + 736 <span class="c">#</span> +<a name="_ValidateReadCompoundIDField-"></a> 737 <span class="k">sub </span><span class="m">_ValidateReadCompoundIDField</span> <span class="s">{</span> + 738 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 739 <span class="k">my</span><span class="s">(</span><span class="i">$SpecifiedDataField</span><span class="s">)</span><span class="sc">;</span> + 740 + 741 <span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} = <span class="n">0</span><span class="sc">;</span> + 742 + 743 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^DataField$/i</span><span class="s">)</span> <span class="s">{</span> + 744 <span class="i">$SpecifiedDataField</span> = <span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>}<span class="sc">;</span> + 745 <span class="k">if</span> <span class="s">(</span>! <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}{<span class="i">$SpecifiedDataField</span>}<span class="s">)</span> <span class="s">{</span> + 746 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundIDField: Compound ID data field, $SpecifiedDataField, specified using \"CompoundIDField\" in \"DataField\" \"CompoundIDMode\" doesn't exist..."</span><span class="sc">;</span> + 747 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 748 <span class="s">}</span> + 749 <span class="s">}</span> + 750 + 751 <span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} = <span class="n">1</span><span class="sc">;</span> + 752 + 753 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 754 <span class="s">}</span> + 755 + 756 <span class="c"># Validate fingerprints string field information...</span> + 757 <span class="c">#</span> +<a name="_ValidateReadFingerprintsField-"></a> 758 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsField</span> <span class="s">{</span> + 759 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 760 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span> + 761 + 762 <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} = <span class="n">0</span><span class="sc">;</span> + 763 + 764 <span class="i">$FingerprintsFieldLabel</span> = <span class="q">''</span><span class="sc">;</span> + 765 + 766 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} !~ <span class="q">/^AutoDetect$/i</span><span class="s">)</span> <span class="s">{</span> + 767 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span> + 768 <span class="k">if</span> <span class="s">(</span>! <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span> + 769 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsField: Fingerprints data field value, $FingerprintsFieldLabel, specified using \"FingerprintsFieldLabel\" doesn't exist..."</span><span class="sc">;</span> + 770 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 771 <span class="s">}</span> + 772 <span class="s">}</span> + 773 <span class="k">else</span> <span class="s">{</span> + 774 <span class="c"># Make sure default fingerprints field does exist...</span> + 775 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldFound</span><span class="cm">,</span> <span class="i">$DataFieldLabel</span><span class="s">)</span><span class="sc">;</span> + 776 <span class="i">$FingerprintsFieldFound</span> = <span class="n">0</span><span class="sc">;</span> + 777 + 778 <span class="j">DATAFIELDLABEL:</span> <span class="k">for</span> <span class="i">$DataFieldLabel</span> <span class="s">(</span><span class="k">keys</span> <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}}<span class="s">)</span> <span class="s">{</span> + 779 <span class="k">if</span> <span class="s">(</span><span class="i">$DataFieldLabel</span> =~ <span class="q">/Fingerprints/i</span><span class="s">)</span> <span class="s">{</span> + 780 <span class="i">$FingerprintsFieldFound</span> = <span class="n">1</span><span class="sc">;</span> + 781 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$DataFieldLabel</span><span class="sc">;</span> + 782 <span class="k">last</span> <span class="j">DATAFIELDLABEL</span><span class="sc">;</span> + 783 <span class="s">}</span> + 784 <span class="s">}</span> + 785 <span class="k">if</span> <span class="s">(</span>!<span class="i">$FingerprintsFieldFound</span><span class="s">)</span> <span class="s">{</span> + 786 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsField: Data field label containing \"Fingerprints\" string in its name doesn't exist..."</span><span class="sc">;</span> + 787 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 788 <span class="s">}</span> + 789 <span class="s">}</span> + 790 + 791 <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} = <span class="n">1</span><span class="sc">;</span> + 792 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="i">$FingerprintsFieldLabel</span><span class="sc">;</span> + 793 + 794 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 795 <span class="s">}</span> + 796 + 797 <span class="c"># Validate fingerprints string mode information...</span> + 798 <span class="c">#</span> +<a name="_ValidateReadFingerprintsStringMode-"></a> 799 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsStringMode</span> <span class="s">{</span> + 800 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 801 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsBitVectorStringMode</span><span class="cm">,</span> <span class="i">$FingerprintsVectorStringMode</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringType</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringDescription</span><span class="cm">,</span> <span class="i">$FingerprintsFieldLabel</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="sc">;</span> + 802 + 803 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 804 + 805 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 806 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 807 + 808 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="q">''</span><span class="sc">;</span> + 809 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="q">''</span><span class="sc">;</span> + 810 + 811 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span> + 812 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span> + 813 + 814 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">''</span><span class="sc">;</span> + 815 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="q">''</span><span class="sc">;</span> + 816 + 817 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span> + 818 + 819 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringTypeAndDescription</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span> + 820 + 821 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span> + 822 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> !~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> + 823 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, doesn't match value, FingerprintsBitVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span> + 824 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 825 <span class="s">}</span> + 826 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> + 827 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsBitVector'</span><span class="sc">;</span> + 828 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span> + 829 <span class="s">}</span> + 830 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span> + 831 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> !~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> + 832 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, doesn't match value, FingerprintsVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span> + 833 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 834 <span class="s">}</span> + 835 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> + 836 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsVector'</span><span class="sc">;</span> + 837 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span> + 838 <span class="s">}</span> + 839 <span class="k">else</span> <span class="s">{</span> + 840 <span class="c"># AutoDetect mode...</span> + 841 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> + 842 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> + 843 <span class="s">}</span> + 844 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> + 845 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span> + 846 <span class="s">}</span> + 847 <span class="k">else</span> <span class="s">{</span> + 848 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, identified during, AutoDetect, value of \"FingerprintsStringMode\" is not valid; Supported fingerprints types: FingerprintBitVector or FingerprintsVector..."</span><span class="sc">;</span> + 849 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> + 850 <span class="s">}</span> + 851 <span class="i">$FirstFingerprintsStringType</span> = <span class="i">$FingerprintsType</span><span class="sc">;</span> + 852 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span> + 853 <span class="s">}</span> + 854 + 855 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">1</span><span class="sc">;</span> + 856 + 857 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="i">$FingerprintsBitVectorStringMode</span><span class="sc">;</span> + 858 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="i">$FingerprintsVectorStringMode</span><span class="sc">;</span> + 859 + 860 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="i">$FirstFingerprintsStringType</span><span class="sc">;</span> + 861 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="i">$FirstFingerprintsStringDescription</span><span class="sc">;</span> + 862 + 863 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span> + 864 <span class="s">}</span> + 865 + 866 <span class="c"># Write fingerprints string generated from specified fingerprints, fingerprints-bit vector, or</span> + 867 <span class="c"># fingerprints vector object and other data to SD file...</span> + 868 <span class="c">#</span> +<a name="WriteFingerprints-"></a> 869 <span class="k">sub </span><span class="m">WriteFingerprints</span> <span class="s">{</span> + 870 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$CompoundString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 871 + 872 <span class="c"># Initialize data for current compound...</span> + 873 <span class="i">$This</span><span class="i">->_InitializeWriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 874 + 875 <span class="c"># Set fingerprints object...</span> + 876 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span> + 877 + 878 <span class="c"># Generate fingerprints string...</span> + 879 <span class="i">$This</span><span class="i">->_GenerateFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 880 + 881 <span class="c"># Set and update compound string...</span> + 882 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">$CompoundString</span><span class="sc">;</span> + 883 <span class="i">$This</span><span class="i">->_AddFingerprintsDataToCompoundString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 884 + 885 <span class="c"># Write it out...</span> + 886 <span class="i">$This</span><span class="i">->_WriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 887 + 888 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 889 <span class="s">}</span> + 890 + 891 <span class="c"># Write fingerprints string and other data to SD file...</span> + 892 <span class="c">#</span> + 893 <span class="c"># Note:</span> + 894 <span class="c"># o FingerprintsStringMode, BitStringFormat, BitsOrder, VectorStringFormat values</span> + 895 <span class="c"># are ignored during writing of fingerprints and it's written to the file as it is.</span> + 896 <span class="c"># o CompoundString contains no fingerprints data</span> + 897 <span class="c">#</span> +<a name="WriteFingerprintsString-"></a> 898 <span class="k">sub </span><span class="m">WriteFingerprintsString</span> <span class="s">{</span> + 899 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="cm">,</span> <span class="i">$CompoundString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 900 + 901 <span class="c"># Initialize data for current compound...</span> + 902 <span class="i">$This</span><span class="i">->_InitializeWriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 903 + 904 <span class="c"># Set fingerprints string...</span> + 905 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span> + 906 + 907 <span class="c"># Generate fingerprints object...</span> + 908 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 909 + 910 <span class="c"># Set and update compound string...</span> + 911 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">$CompoundString</span><span class="sc">;</span> + 912 <span class="i">$This</span><span class="i">->_AddFingerprintsDataToCompoundString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 913 + 914 <span class="c"># Write it out...</span> + 915 <span class="i">$This</span><span class="i">->_WriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 916 + 917 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 918 <span class="s">}</span> + 919 + 920 <span class="c"># Initialize compound data string for writing...</span> + 921 <span class="c">#</span> +<a name="_InitializeWriteCompoundDataString-"></a> 922 <span class="k">sub </span><span class="m">_InitializeWriteCompoundDataString</span> <span class="s">{</span> + 923 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 924 + 925 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="k">undef</span><span class="sc">;</span> + 926 + 927 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> + 928 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span> + 929 + 930 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 931 <span class="s">}</span> + 932 + 933 <span class="c"># Writi compound data string...</span> + 934 <span class="c">#</span> +<a name="_WriteCompoundDataString-"></a> 935 <span class="k">sub </span><span class="m">_WriteCompoundDataString</span> <span class="s">{</span> + 936 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 937 <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span> + 938 + 939 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>}<span class="s">)</span> <span class="s">{</span> + 940 <span class="i">$This</span><span class="i">->_ProcessFirstCompoundDataStringWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 941 <span class="s">}</span> + 942 + 943 <span class="i">$This</span>->{<span class="w">CompoundNum</span>} += <span class="n">1</span><span class="sc">;</span> + 944 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span> + 945 + 946 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"$This->{CompoundString}\n"</span><span class="sc">;</span> + 947 + 948 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 949 <span class="s">}</span> + 950 + 951 <span class="c"># Process first compound data string write...</span> + 952 <span class="c">#</span> +<a name="_ProcessFirstCompoundDataStringWrite-"></a> 953 <span class="k">sub </span><span class="m">_ProcessFirstCompoundDataStringWrite</span> <span class="s">{</span> + 954 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 955 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span> + 956 + 957 <span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>} = <span class="n">0</span><span class="sc">;</span> + 958 + 959 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 960 <span class="s">}</span> + 961 + 962 <span class="c"># Get ready for writing fingerprints SD file...</span> + 963 <span class="c">#</span> +<a name="_PrepareForWritingFingerprintsSDFileData-"></a> 964 <span class="k">sub </span><span class="m">_PrepareForWritingFingerprintsSDFileData</span> <span class="s">{</span> + 965 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 966 <span class="k">my</span><span class="s">(</span><span class="i">$SDFile</span><span class="s">)</span><span class="sc">;</span> + 967 + 968 <span class="i">$SDFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span> + 969 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">Overwrite</span>}<span class="s">)</span> <span class="s">{</span> + 970 <span class="k">if</span> <span class="s">(</span><span class="k">-e</span> <span class="i">$SDFile</span><span class="s">)</span> <span class="s">{</span> + 971 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $SDFile, already exist. Use overwrite option..."</span><span class="sc">;</span> + 972 <span class="s">}</span> + 973 <span class="s">}</span> + 974 + 975 <span class="c"># Setup FingerprintsStringMode status...</span> + 976 + 977 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 978 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 979 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span> + 980 + 981 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span> + 982 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span> + 983 <span class="s">}</span> + 984 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span> + 985 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span> + 986 <span class="s">}</span> + 987 + 988 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} || <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> + 989 + 990 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> + 991 <span class="i">$This</span><span class="i">->_SetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 992 <span class="i">$This</span><span class="i">->_SetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 993 <span class="s">}</span> + 994 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> + 995 <span class="i">$This</span><span class="i">->_SetDefaultVectorStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 996 <span class="s">}</span> + 997 + 998 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> + 999 <span class="s">}</span> +1000 +1001 <span class="c"># Set default value for bit string format...</span> +1002 <span class="c">#</span> +<a name="_SetDefaultBitStringFormat-"></a>1003 <span class="k">sub </span><span class="m">_SetDefaultBitStringFormat</span> <span class="s">{</span> +1004 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1005 +1006 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="s">)</span> <span class="s">{</span> +1007 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1008 <span class="s">}</span> +1009 +1010 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1011 <span class="s">}</span> +1012 +1013 <span class="c"># Set default value for bit string format...</span> +1014 <span class="c">#</span> +<a name="_SetDefaultBitsOrder-"></a>1015 <span class="k">sub </span><span class="m">_SetDefaultBitsOrder</span> <span class="s">{</span> +1016 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1017 +1018 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span> <span class="s">{</span> +1019 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> +1020 <span class="s">}</span> +1021 +1022 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1023 <span class="s">}</span> +1024 +1025 <span class="c"># Set default value for vector string format...</span> +1026 <span class="c">#</span> +<a name="_SetDefaultVectorStringFormat-"></a>1027 <span class="k">sub </span><span class="m">_SetDefaultVectorStringFormat</span> <span class="s">{</span> +1028 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1029 +1030 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} && <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span> +1031 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span><span class="sc">;</span> +1032 <span class="s">}</span> +1033 +1034 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1035 <span class="s">}</span> +1036 +1037 <span class="c"># Add fingerprints data to compound string...</span> +1038 <span class="c">#</span> +<a name="_AddFingerprintsDataToCompoundString-"></a>1039 <span class="k">sub </span><span class="m">_AddFingerprintsDataToCompoundString</span> <span class="s">{</span> +1040 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1041 <span class="k">my</span><span class="s">(</span><span class="i">$CmpdString</span><span class="s">)</span><span class="sc">;</span> +1042 +1043 <span class="c"># Check and remove existing fingerprints data...</span> +1044 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->_IsFingerprintsDataPresentInCompoundString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> +1045 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_AddFingerprintsDataToCompoundString: The compound string already contains fingerprints data corresponding to fingerprints field label $This->{FingerprintsFieldLabel}; It has been replaced with new fingerprints data..."</span><span class="sc">;</span> +1046 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">SDFileUtil::RemoveCmpdDataHeaderLabelAndValue</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span> +1047 <span class="s">}</span> +1048 +1049 <span class="i">$CmpdString</span> = <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span> +1050 +1051 <span class="i">$CmpdString</span> =~ <span class="q">s/\$\$\$\$$//</span><span class="sc">;</span> +1052 +1053 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="q">"${CmpdString}> <$This->{FingerprintsFieldLabel}>\n$This->{FingerprintsString}\n\n\$\$\$\$"</span><span class="sc">;</span> +1054 +1055 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1056 <span class="s">}</span> +1057 +1058 <span class="c"># Is fingerprints data already present in compound string?</span> +1059 <span class="c">#</span> +<a name="_IsFingerprintsDataPresentInCompoundString-"></a>1060 <span class="k">sub </span><span class="m">_IsFingerprintsDataPresentInCompoundString</span> <span class="s">{</span> +1061 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1062 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span> +1063 +1064 <span class="k">if</span> <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="s">)</span> || <span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> +1065 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span> +1066 <span class="s">}</span> +1067 +1068 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span> +1069 +1070 <span class="k">return</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>} =~ <span class="q">/<$FingerprintsFieldLabel>/</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> +1071 <span class="s">}</span> +1072 +1073 <span class="c"># Generate fingerprints object using current fingerprints string...</span> +1074 <span class="c">#</span> +<a name="_GenerateFingerprintsObject-"></a>1075 <span class="k">sub </span><span class="m">_GenerateFingerprintsObject</span> <span class="s">{</span> +1076 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1077 +1078 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span> +1079 +1080 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span> +1081 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1082 <span class="s">}</span> +1083 +1084 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1085 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsBitVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span> +1086 <span class="s">}</span> +1087 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1088 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span> +1089 <span class="s">}</span> +1090 <span class="k">else</span> <span class="s">{</span> +1091 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span> +1092 <span class="s">}</span> +1093 +1094 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1095 <span class="s">}</span> +1096 +1097 <span class="c"># Generate fingerprints string using current fingerprints object...</span> +1098 <span class="c">#</span> +<a name="_GenerateFingerprintsString-"></a>1099 <span class="k">sub </span><span class="m">_GenerateFingerprintsString</span> <span class="s">{</span> +1100 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1101 +1102 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="q">''</span><span class="sc">;</span> +1103 +1104 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span> +1105 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1106 <span class="s">}</span> +1107 +1108 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1109 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span><span class="sc">;</span> +1110 <span class="s">}</span> +1111 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span> +1112 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>}<span class="s">)</span><span class="sc">;</span> +1113 <span class="s">}</span> +1114 +1115 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> +1116 <span class="s">}</span> +1117 +1118 <span class="c"># Is it a fingerprints file?</span> +<a name="IsFingerprintsSDFile-"></a>1119 <span class="k">sub </span><span class="m">IsFingerprintsSDFile ($;$)</span> <span class="s">{</span> +1120 <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1121 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$Status</span><span class="s">)</span><span class="sc">;</span> +1122 +1123 <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> && <span class="s">(</span><span class="i">_IsFingerprintsSDFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> +1124 <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span> +1125 <span class="s">}</span> +1126 <span class="k">else</span> <span class="s">{</span> +1127 <span class="i">$FileName</span> = <span class="i">$FirstParameter</span><span class="sc">;</span> +1128 <span class="s">}</span> +1129 +1130 <span class="c"># Check file extension...</span> +1131 <span class="i">$Status</span> = <span class="i">FileUtil::CheckFileType</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="q">"sdf sd"</span><span class="s">)</span><span class="sc">;</span> +1132 +1133 <span class="k">return</span> <span class="i">$Status</span><span class="sc">;</span> +1134 <span class="s">}</span> +1135 +1136 <span class="c"># Is it a FingerprintsSDFileIO object?</span> +<a name="_IsFingerprintsSDFileIO-"></a>1137 <span class="k">sub </span><span class="m">_IsFingerprintsSDFileIO</span> <span class="s">{</span> +1138 <span class="k">my</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> +1139 +1140 <span class="k">return</span> <span class="s">(</span><span class="i">Scalar::Util::blessed</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> && <span class="i">$Object</span><span class="i">->isa</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> +1141 <span class="s">}</span> +1142 +<a name="EOF-"></a></pre> +<p> </p> +<br /> +<center> +<img src="../../../images/h2o2.png"> +</center> +</body> +</html>