Mercurial > repos > deepakjadmin > mayatool3_test3
comparison mayachemtools/docs/scripts/html/TextFilesToSDFiles.html @ 0:73ae111cf86f draft
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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 11:55:01 -0500 |
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| -1:000000000000 | 0:73ae111cf86f |
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| 1 <html> | |
| 2 <head> | |
| 3 <title>MayaChemTools:Documentation:TextFilesToSDFiles.pl</title> | |
| 4 <meta http-equiv="content-type" content="text/html;charset=utf-8"> | |
| 5 <link rel="stylesheet" type="text/css" href="../../css/MayaChemTools.css"> | |
| 6 </head> | |
| 7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> | |
| 8 <br/> | |
| 9 <center> | |
| 10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> | |
| 11 </center> | |
| 12 <br/> | |
| 13 <div class="DocNav"> | |
| 14 <table width="100%" border=0 cellpadding=0 cellspacing=2> | |
| 15 <tr align="left" valign="top"><td width="33%" align="left"><a href="./TextFilesToHTML.html" title="TextFilesToHTML.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./TopologicalAtomPairsFingerprints.html" title="TopologicalAtomPairsFingerprints.html">Next</a></td><td width="34%" align="middle"><strong>TextFilesToSDFiles.pl</strong></td><td width="33%" align="right"><a href="././code/TextFilesToSDFiles.html" title="View source code">Code</a> | <a href="./../pdf/TextFilesToSDFiles.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/TextFilesToSDFiles.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/TextFilesToSDFiles.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/TextFilesToSDFiles.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr> | |
| 16 </table> | |
| 17 </div> | |
| 18 <p> | |
| 19 </p> | |
| 20 <h2>NAME</h2> | |
| 21 <p>TextFilesToSDFiles.pl - Generate SD files from CSV or TSV TextFile(s)</p> | |
| 22 <p> | |
| 23 </p> | |
| 24 <h2>SYNOPSIS</h2> | |
| 25 <p>TextFilesToSDFiles.pl TextFile(s)...</p> | |
| 26 <p>TextFilesToSDFiles.pl [<strong>-h, --help</strong>] [<strong>--indelim</strong> comma | semicolon] [<strong>-l, --label</strong> yes | no] | |
| 27 [<strong>-o, --overwrite</strong>] [<strong>-r, --root</strong> rootname] [<strong>-w, --workingdir</strong> dirname] TextFile(s)...</p> | |
| 28 <p> | |
| 29 </p> | |
| 30 <h2>DESCRIPTION</h2> | |
| 31 <p>Generate SD files from CSV or TSV <em>TextFile(s)</em>. The new SD files contain no structure data | |
| 32 as indicated by empty structure data block; Data fields and values in SD files are generated | |
| 33 using <em>TextFile(s)</em> column labels and corresponding data values.</p> | |
| 34 <p>Multiple <em>TextFile(s)</em> names are separated by space. The valid file extensions are | |
| 35 <em>.csv</em> and <em>.tsv</em> for comma/semicolon and tab delimited text files respectively. | |
| 36 All other file names are ignored. All the text files in a current directory can be specified | |
| 37 by <em>*.csv</em>, <em>*.tsv</em>, or the current directory name. The <strong>--indelim</strong> option | |
| 38 determines the format of <em>TextFile(s)</em>. Any file which doesn't correspond to | |
| 39 the format indicated by <strong>--indelim</strong> option is ignored.</p> | |
| 40 <p> | |
| 41 </p> | |
| 42 <h2>OPTIONS</h2> | |
| 43 <dl> | |
| 44 <dt><strong><strong>-h, --help</strong></strong></dt> | |
| 45 <dd> | |
| 46 <p>Print this help message.</p> | |
| 47 </dd> | |
| 48 <dt><strong><strong>--indelim</strong> <em>comma | semicolon</em></strong></dt> | |
| 49 <dd> | |
| 50 <p>Input delimiter for CSV <em>TextFile(s)</em>. Possible values: <em>comma or semicolon</em>. | |
| 51 Default value: <em>comma</em>. For TSV files, this option is ignored and <em>tab</em> is used as a | |
| 52 delimiter.</p> | |
| 53 </dd> | |
| 54 <dt><strong><strong>-l, --label</strong> <em>yes | no</em></strong></dt> | |
| 55 <dd> | |
| 56 <p>First line contains column labels. Possible values: <em>yes or no</em>. Default value: <em>yes</em>. | |
| 57 Column labels are used to create SD data field labels; otherwise, data field labels look | |
| 58 like Column<colnumber>Data.</p> | |
| 59 </dd> | |
| 60 <dt><strong><strong>-o, --overwrite</strong></strong></dt> | |
| 61 <dd> | |
| 62 <p>Overwrite existing files.</p> | |
| 63 </dd> | |
| 64 <dt><strong><strong>-r, --root</strong> <em>rootname</em></strong></dt> | |
| 65 <dd> | |
| 66 <p>New SD file names are generated using the root: <Root>.sdf. Default new file names: | |
| 67 <TextFileName>WithNoStrData.sdf. This option is ignored for multiple input files.</p> | |
| 68 </dd> | |
| 69 <dt><strong><strong>-w, --workingdir</strong> <em>dirname</em></strong></dt> | |
| 70 <dd> | |
| 71 <p>Location of working directory. Default: current directory.</p> | |
| 72 </dd> | |
| 73 </dl> | |
| 74 <p> | |
| 75 </p> | |
| 76 <h2>EXAMPLES</h2> | |
| 77 <p>To generate NewSample1.sdf file from Sample1.csv file, type:</p> | |
| 78 <div class="ExampleBox"> | |
| 79 % TextFilesToSDFiles.pl -o -r NewSample1 Sample1.csv</div> | |
| 80 <p>To generate NewSample1.sdf file from Sample1.tsv file which doesn't | |
| 81 contain column labels line, type:</p> | |
| 82 <div class="ExampleBox"> | |
| 83 % TextFilesToSDFiles.pl --label no -o -r NewSample1 Sample1.tsv</div> | |
| 84 <p> | |
| 85 </p> | |
| 86 <h2>AUTHOR</h2> | |
| 87 <p><a href="mailto:msud@san.rr.com">Manish Sud</a></p> | |
| 88 <p> | |
| 89 </p> | |
| 90 <h2>SEE ALSO</h2> | |
| 91 <p><a href="./JoinTextFiles.html">JoinTextFiles.pl</a>, <a href="./MergeTextFiles.html">MergeTextFiles.pl</a>, <a href="./ModifySDFilesDataFields.html">ModifySDFilesDataFields.pl</a>, <a href="./ModifyTextFilesFormat.html">ModifyTextFilesFormat.pl</a> | |
| 92 </p> | |
| 93 <p> | |
| 94 </p> | |
| 95 <h2>COPYRIGHT</h2> | |
| 96 <p>Copyright (C) 2015 Manish Sud. All rights reserved.</p> | |
| 97 <p>This file is part of MayaChemTools.</p> | |
| 98 <p>MayaChemTools is free software; you can redistribute it and/or modify it under | |
| 99 the terms of the GNU Lesser General Public License as published by the Free | |
| 100 Software Foundation; either version 3 of the License, or (at your option) | |
| 101 any later version.</p> | |
| 102 <p> </p><p> </p><div class="DocNav"> | |
| 103 <table width="100%" border=0 cellpadding=0 cellspacing=2> | |
| 104 <tr align="left" valign="top"><td width="33%" align="left"><a href="./TextFilesToHTML.html" title="TextFilesToHTML.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./TopologicalAtomPairsFingerprints.html" title="TopologicalAtomPairsFingerprints.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>TextFilesToSDFiles.pl</strong></td></tr> | |
| 105 </table> | |
| 106 </div> | |
| 107 <br /> | |
| 108 <center> | |
| 109 <img src="../../images/h2o2.png"> | |
| 110 </center> | |
| 111 </body> | |
| 112 </html> |