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comparison mayachemtools/docs/scripts/html/SortTextFiles.html @ 0:73ae111cf86f draft
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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 11:55:01 -0500 |
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| -1:000000000000 | 0:73ae111cf86f |
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| 1 <html> | |
| 2 <head> | |
| 3 <title>MayaChemTools:Documentation:SortTextFiles.pl</title> | |
| 4 <meta http-equiv="content-type" content="text/html;charset=utf-8"> | |
| 5 <link rel="stylesheet" type="text/css" href="../../css/MayaChemTools.css"> | |
| 6 </head> | |
| 7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> | |
| 8 <br/> | |
| 9 <center> | |
| 10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> | |
| 11 </center> | |
| 12 <br/> | |
| 13 <div class="DocNav"> | |
| 14 <table width="100%" border=0 cellpadding=0 cellspacing=2> | |
| 15 <tr align="left" valign="top"><td width="33%" align="left"><a href="./SortSDFiles.html" title="SortSDFiles.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./SplitSDFiles.html" title="SplitSDFiles.html">Next</a></td><td width="34%" align="middle"><strong>SortTextFiles.pl</strong></td><td width="33%" align="right"><a href="././code/SortTextFiles.html" title="View source code">Code</a> | <a href="./../pdf/SortTextFiles.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/SortTextFiles.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/SortTextFiles.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/SortTextFiles.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr> | |
| 16 </table> | |
| 17 </div> | |
| 18 <p> | |
| 19 </p> | |
| 20 <h2>NAME</h2> | |
| 21 <p>SortTextFiles.pl - Sort TextFile(s) using values for a column</p> | |
| 22 <p> | |
| 23 </p> | |
| 24 <h2>SYNOPSIS</h2> | |
| 25 <p>SortTextFiles.pl TextFile(s)...</p> | |
| 26 <p>SortTextFiles.pl [<strong>-d, --detail</strong> infolevel] [<strong>-h, --help</strong>] [<strong>--indelim</strong> comma | semicolon] [<strong>-k, --key</strong> colnum | collabel] | |
| 27 [<strong>--keydata</strong> numeric | alphanumeric] [<strong>-m, --mode</strong> colnum | collabel] [<strong>-o, --overwrite</strong>] | |
| 28 [<strong>--outdelim</strong> comma | tab | semicolon] [<strong>-q, --quote</strong> yes | no] [<strong>-r, --root</strong> rootname] | |
| 29 [<strong>-s, --sort</strong> ascending | descending] [<strong>-w, --workingdir</strong> dirname] TextFile(s)...</p> | |
| 30 <p> | |
| 31 </p> | |
| 32 <h2>DESCRIPTION</h2> | |
| 33 <p>Sort <em>TextFile(s)</em> using values for a key column specified by a column number or label. | |
| 34 Only one column key can be specified for sorting. In an event of conflict during sorting | |
| 35 process, two similar values for a column key are simply transferred to output files in | |
| 36 order of their presence in input files. Additionally, rows with empty or inappropriate | |
| 37 values for column key are simply placed at the end. The file names are separated by space. | |
| 38 The valid file extensions are <em>.csv</em> and <em>.tsv</em> for comma/semicolon and tab delimited | |
| 39 text files respectively. All other file names are ignored. All the text files in a | |
| 40 current directory can be specified by <em>*.csv</em>, <em>*.tsv</em>, or the current directory | |
| 41 name. The <strong>--indelim</strong> option determines the format of <em>TextFile(s)</em>. Any file | |
| 42 which doesn't correspond to the format indicated by <strong>--indelim</strong> option is ignored.</p> | |
| 43 <p> | |
| 44 </p> | |
| 45 <h2>OPTIONS</h2> | |
| 46 <dl> | |
| 47 <dt><strong><strong>-d, --detail</strong> <em>infolevel</em></strong></dt> | |
| 48 <dd> | |
| 49 <p>Level of information to print about lines being ignored. Default: <em>1</em>. Possible values: | |
| 50 <em>1, 2 or 3</em>.</p> | |
| 51 </dd> | |
| 52 <dt><strong><strong>-h, --help</strong></strong></dt> | |
| 53 <dd> | |
| 54 <p>Print this help message.</p> | |
| 55 </dd> | |
| 56 <dt><strong><strong>--indelim</strong> <em>comma | semicolon</em></strong></dt> | |
| 57 <dd> | |
| 58 <p>Input delimiter for CSV <em>TextFile(s)</em>. Possible values: <em>comma or semicolon</em>. | |
| 59 Default value: <em>comma</em>. For TSV files, this option is ignored and <em>tab</em> is used as a | |
| 60 delimiter.</p> | |
| 61 </dd> | |
| 62 <dt><strong><strong>-k, --key</strong> <em>col number | col name</em></strong></dt> | |
| 63 <dd> | |
| 64 <p>This value is mode specific. It specifies which column to use for sorting <em>TextFile(s)</em>. | |
| 65 Possible values: <em>col number or col label</em>. Default value: <em>first column</em>.</p> | |
| 66 </dd> | |
| 67 <dt><strong><strong>--keydata</strong> <em>numeric | alphanumeric</em></strong></dt> | |
| 68 <dd> | |
| 69 <p>Data type for column key. Possible values: <em>numeric or alphanumeric</em>. Default value: | |
| 70 <em>numeric</em>. For <em>alphanumeric</em> data values, comparison is case insensitive.</p> | |
| 71 </dd> | |
| 72 <dt><strong><strong>-m, --mode</strong> <em>colnum | collabel</em></strong></dt> | |
| 73 <dd> | |
| 74 <p>Specify how to sort text files: using column number or column label. | |
| 75 Possible values: <em>colnum or collabel</em>. Default value: <em>colnum</em>.</p> | |
| 76 </dd> | |
| 77 <dt><strong><strong>-o, --overwrite</strong></strong></dt> | |
| 78 <dd> | |
| 79 <p>Overwrite existing files.</p> | |
| 80 </dd> | |
| 81 <dt><strong><strong>--outdelim</strong> <em>comma | tab | semicolon</em></strong></dt> | |
| 82 <dd> | |
| 83 <p>Output text file delimiter. Possible values: <em>comma, tab, or semicolon</em> | |
| 84 Default value: <em>comma</em>.</p> | |
| 85 </dd> | |
| 86 <dt><strong><strong>-q, --quote</strong> <em>yes | no</em></strong></dt> | |
| 87 <dd> | |
| 88 <p>Put quotes around column values in output text file. Possible values: <em>yes or | |
| 89 no</em>. Default value: <em>yes</em>.</p> | |
| 90 </dd> | |
| 91 <dt><strong><strong>-r, --root</strong> <em>rootname</em></strong></dt> | |
| 92 <dd> | |
| 93 <p>New text file name is generated using the root: <Root>.<Ext>. Default new file | |
| 94 name: <InitialTextFileName>SortedByColumn.<Ext>. The csv, and tsv | |
| 95 <Ext> values are used for comma/semicolon, and tab delimited text files | |
| 96 respectively. This option is ignored for multiple input files.</p> | |
| 97 </dd> | |
| 98 <dt><strong><strong>-s, --sort</strong> <em>ascending | descending</em></strong></dt> | |
| 99 <dd> | |
| 100 <p>Sorting order for column values. Possible values: <em>ascending or descending</em>. | |
| 101 Default value: <em>ascending</em>.</p> | |
| 102 </dd> | |
| 103 <dt><strong><strong>-w, --workingdir</strong> <em>dirname</em></strong></dt> | |
| 104 <dd> | |
| 105 <p>Location of working directory. Default: current directory.</p> | |
| 106 </dd> | |
| 107 </dl> | |
| 108 <p> | |
| 109 </p> | |
| 110 <h2>EXAMPLES</h2> | |
| 111 <p>To perform numerical sort in ascending order using first column values and generate | |
| 112 a new CSV text file NewSample1.csv, type:</p> | |
| 113 <div class="ExampleBox"> | |
| 114 % SortTextFiles.pl -o -r NewSample1 Sample1.csv</div> | |
| 115 <p>To perform numerical sort in descending order using MolWeight column and generate | |
| 116 a new CSV text file NewSample1.csv, type:</p> | |
| 117 <div class="ExampleBox"> | |
| 118 % SortTextFiles.pl -m collabel -k MolWeight --keydata numeric | |
| 119 -s descending -r NewSample1 -o Sample1.csv</div> | |
| 120 <p>To perform numerical sort in ascending order using column number 1 and generate | |
| 121 a new TSV text file NewSample1.csv, type:</p> | |
| 122 <div class="ExampleBox"> | |
| 123 % SortTextFiles.pl -m colnum -k 1 --keydata numeric -s ascending | |
| 124 -r NewSample1 --outdelim tab -o Sample1.csv</div> | |
| 125 <p> | |
| 126 </p> | |
| 127 <h2>AUTHOR</h2> | |
| 128 <p><a href="mailto:msud@san.rr.com">Manish Sud</a></p> | |
| 129 <p> | |
| 130 </p> | |
| 131 <h2>SEE ALSO</h2> | |
| 132 <p><a href="./JoinTextFiles.html">JoinTextFiles.pl</a>, <a href="./MergeTextFilesWithSD.html">MergeTextFilesWithSD.pl</a>, <a href="./ModifyTextFilesFormat.html">ModifyTextFilesFormat.pl</a>, <a href="./SplitTextFiles.html">SplitTextFiles.pl</a>, <a href="./TextFilesToHTML.html">TextFilesToHTML.pl</a> | |
| 133 </p> | |
| 134 <p> | |
| 135 </p> | |
| 136 <h2>COPYRIGHT</h2> | |
| 137 <p>Copyright (C) 2015 Manish Sud. All rights reserved.</p> | |
| 138 <p>This file is part of MayaChemTools.</p> | |
| 139 <p>MayaChemTools is free software; you can redistribute it and/or modify it under | |
| 140 the terms of the GNU Lesser General Public License as published by the Free | |
| 141 Software Foundation; either version 3 of the License, or (at your option) | |
| 142 any later version.</p> | |
| 143 <p> </p><p> </p><div class="DocNav"> | |
| 144 <table width="100%" border=0 cellpadding=0 cellspacing=2> | |
| 145 <tr align="left" valign="top"><td width="33%" align="left"><a href="./SortSDFiles.html" title="SortSDFiles.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./SplitSDFiles.html" title="SplitSDFiles.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>SortTextFiles.pl</strong></td></tr> | |
| 146 </table> | |
| 147 </div> | |
| 148 <br /> | |
| 149 <center> | |
| 150 <img src="../../images/h2o2.png"> | |
| 151 </center> | |
| 152 </body> | |
| 153 </html> |