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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 11:55:01 -0500 |
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| 1 <html> | |
| 2 <head> | |
| 3 <title>MayaChemTools:Documentation:DBSchemaTablesToTextFiles.pl</title> | |
| 4 <meta http-equiv="content-type" content="text/html;charset=utf-8"> | |
| 5 <link rel="stylesheet" type="text/css" href="../../css/MayaChemTools.css"> | |
| 6 </head> | |
| 7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> | |
| 8 <br/> | |
| 9 <center> | |
| 10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> | |
| 11 </center> | |
| 12 <br/> | |
| 13 <div class="DocNav"> | |
| 14 <table width="100%" border=0 cellpadding=0 cellspacing=2> | |
| 15 <tr align="left" valign="top"><td width="33%" align="left"><a href="./CalculatePhysicochemicalProperties.html" title="CalculatePhysicochemicalProperties.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./DBSQLToTextFiles.html" title="DBSQLToTextFiles.html">Next</a></td><td width="34%" align="middle"><strong>DBSchemaTablesToTextFiles.pl</strong></td><td width="33%" align="right"><a href="././code/DBSchemaTablesToTextFiles.html" title="View source code">Code</a> | <a href="./../pdf/DBSchemaTablesToTextFiles.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/DBSchemaTablesToTextFiles.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/DBSchemaTablesToTextFiles.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/DBSchemaTablesToTextFiles.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr> | |
| 16 </table> | |
| 17 </div> | |
| 18 <p> | |
| 19 </p> | |
| 20 <h2>NAME</h2> | |
| 21 <p>DBSchemaTablesToTextFiles.pl - Export table data from database SchemaName(s) into CSV/TSV text files</p> | |
| 22 <p> | |
| 23 </p> | |
| 24 <h2>SYNOPSIS</h2> | |
| 25 <p>DBSchemaTablesToTextFiles.pl SchemaName(s)...</p> | |
| 26 <p>DBSchemaTablesToTextFiles.pl [<strong>-d, --dbdriver</strong> mysql | Oracle| Postgres or Pg] [<strong>--dbhost </strong> hostname] | |
| 27 [<strong>--dbname</strong> databasename] [<strong>--dbpassword</strong> password] [<strong>--dbusername</strong> username] | |
| 28 [<strong>--exportdatalabels</strong> yes | no] [<strong>--exportlobs</strong> yes | no] [<strong>-h, --help</strong>] | |
| 29 [<strong>-m, --mode</strong> exportdata | describetable] [<strong>-n, --numoutfilesmode</strong> single | multiple] | |
| 30 [<strong>-o, --overwrite</strong>] [<strong>--outdelim</strong> comma | tab | semicolon] | |
| 31 [<strong>-q, --quote</strong> yes | no] [<strong>-r, --root</strong> rootname] [<strong>--replacenullstr string</strong>] | |
| 32 [<strong>-w --workingdir</strong> dirname] SchemaName(s)...</p> | |
| 33 <p> | |
| 34 </p> | |
| 35 <h2>DESCRIPTION</h2> | |
| 36 <p>Export table data from database SchemaName(s) into CSV/TSV text files. Use <strong>-n --numoutfiles</strong> | |
| 37 option to control the number of text files generated for a database schema.</p> | |
| 38 <p> | |
| 39 </p> | |
| 40 <h2>OPTIONS</h2> | |
| 41 <dl> | |
| 42 <dt><strong><strong>-d, --dbdriver</strong> <em>mysql | Oracle | Postgres or Pg</em></strong></dt> | |
| 43 <dd> | |
| 44 <p>Database driver name. Possible values: <em>mysql, Oracle, Postgres or Pg</em>. Default: <em>MySQL</em> or value of | |
| 45 environment variable DBI_DRIVER. This script has only been tested with MySQL, Oracle | |
| 46 and PostgreSQL drivers.</p> | |
| 47 </dd> | |
| 48 <dt><strong><strong>--dbhost </strong> <em>hostname</em></strong></dt> | |
| 49 <dd> | |
| 50 <p>Database host name. Default: <em>127.0.0.1</em> for both MySQL and Oracle. For remote | |
| 51 databases, specify complete remote host domain: <em>dbhostname.org</em> or something | |
| 52 like it.</p> | |
| 53 </dd> | |
| 54 <dt><strong><strong>--dbname</strong> <em>databasename</em></strong></dt> | |
| 55 <dd> | |
| 56 <p>Database name. Default: mysql for MySQL, postgres for PostgreSQL and none for Oracle. | |
| 57 For connecting to local/remote Oracle databases, this value can be left undefined assuming | |
| 58 <strong>--dbhost</strong> is correctly specified.</p> | |
| 59 </dd> | |
| 60 <dt><strong><strong>--dbpassword</strong> <em>password</em></strong></dt> | |
| 61 <dd> | |
| 62 <p>Database user password. Default: <em>none</em> and value of environment variable DBI_PASS | |
| 63 is used for connecting to database.</p> | |
| 64 </dd> | |
| 65 <dt><strong><strong>--dbusername</strong> <em>username</em></strong></dt> | |
| 66 <dd> | |
| 67 <p>Database user name. Default: <em>none</em> and value of environment variable DBI_USER is | |
| 68 used for connecting to database.</p> | |
| 69 </dd> | |
| 70 <dt><strong><strong>--exportdatalabels</strong> <em>yes | no</em></strong></dt> | |
| 71 <dd> | |
| 72 <p>This option is mode specific and controls exporting of column data labels during | |
| 73 exportdata mode. Possible values: <em>yes or no</em>. Default: <em>yes</em>.</p> | |
| 74 </dd> | |
| 75 <dt><strong><strong>--exportlobs</strong> <em>yes | no</em></strong></dt> | |
| 76 <dd> | |
| 77 <p>This option is mode specific and controls exporting of CLOB/BLOB or BYTEA data columns during | |
| 78 exportdata mode. Possible values: <em>yes or no</em>. Default: <em>no</em>.</p> | |
| 79 </dd> | |
| 80 <dt><strong><strong>-h, --help</strong></strong></dt> | |
| 81 <dd> | |
| 82 <p>Print this help message.</p> | |
| 83 </dd> | |
| 84 <dt><strong><strong>-m, --mode</strong> <em>exportdata | describetable</em></strong></dt> | |
| 85 <dd> | |
| 86 <p>Data selection criterion from database. Possible values: <em>exportdata or describetable</em>. | |
| 87 Default value: <em>exportdata</em>.</p> | |
| 88 </dd> | |
| 89 <dt><strong><strong>-n, --numoutfilesmode</strong> <em>single | multiple</em></strong></dt> | |
| 90 <dd> | |
| 91 <p>Number of CSV/TSV output files to generate: combine output into one file or generate | |
| 92 a different file for each table in a schema. Possible values: <em>single or multiple</em>. Default: | |
| 93 <em>single</em>.</p> | |
| 94 <p>In a single output file, data for different tables is separated by a blank line.</p> | |
| 95 <p>Single outfile option in <em>exportdata</em> mode is quite useful for exporting data from all tables | |
| 96 in specifed schemas to one file which can be used for migrating data to another database | |
| 97 or simply provide a backup of data; during <em>describetable</em> mode, it provides a means to | |
| 98 collect information about columns of all schema tables which can help in creation of these | |
| 99 tables on a different database server.</p> | |
| 100 </dd> | |
| 101 <dt><strong><strong>-o, --overwrite</strong></strong></dt> | |
| 102 <dd> | |
| 103 <p>Overwrite existing files.</p> | |
| 104 </dd> | |
| 105 <dt><strong><strong>--outdelim</strong> <em>comma | tab | semicolon</em></strong></dt> | |
| 106 <dd> | |
| 107 <p>Output text file delimiter. Possible values: <em>comma, tab, or semicolon</em>. | |
| 108 Default value: <em>comma</em></p> | |
| 109 </dd> | |
| 110 <dt><strong><strong>-q, --quote</strong> <em>yes | no</em></strong></dt> | |
| 111 <dd> | |
| 112 <p>Put quotes around column values in output text file. Possible values: <em>yes or | |
| 113 no</em>. Default value: <em>yes</em>.</p> | |
| 114 </dd> | |
| 115 <dt><strong><strong>-r, --root</strong> <em>rootname</em></strong></dt> | |
| 116 <dd> | |
| 117 <p>New file name is generated using the root:<Root>.<Ext> and <Root><TableName>.<Ext> | |
| 118 for <em>single</em> and <em>multiple</em> <strong>-n --numoutfiles</strong> option values. Default file name for | |
| 119 <em>single</em> <strong>-n --numoutfiles</strong> option value: <Mode>SchemaTables.<Ext>. Default file | |
| 120 names for <em>multiple</em> <strong>-n --numoutfiles</strong> value: <Mode><SchemaName><TableName>.<Ext>. | |
| 121 Based on <strong>-m --mode</strong> option, <em>Export</em> or <em>Describe</em> <Mode> value is used. The csv and tsv | |
| 122 <Ext> values are used for comma/semicolon, and tab delimited text files respectively. This option is | |
| 123 ignored for multiple input schema names.</p> | |
| 124 </dd> | |
| 125 <dt><strong><strong>--replacenullstr</strong> <em>string</em></strong></dt> | |
| 126 <dd> | |
| 127 <p>Replace NULL or undefined row values with specified value. Default: <em>none</em>.</p> | |
| 128 <p>For importing output text files into MySQL database using "load data local infile '<tablename>.tsv' | |
| 129 into table <tablename>" command, use <em>--raplacenullstr "NULL"</em> in conjunction with <em>--exportdatalabels no</em>, | |
| 130 <em>--quote no</em>, and <em>--outdelim tab</em> options: it'll generate files for direct import into MySQL assuming | |
| 131 tables already exists.</p> | |
| 132 </dd> | |
| 133 <dt><strong><strong>-w --workingdir</strong> <em>dirname</em></strong></dt> | |
| 134 <dd> | |
| 135 <p>Location of working directory. Default: current directory.</p> | |
| 136 </dd> | |
| 137 </dl> | |
| 138 <p> | |
| 139 </p> | |
| 140 <h2>EXAMPLES</h2> | |
| 141 <p>To export data in all tables from mysql schema on a MySQL server running on a local machine | |
| 142 using username/password from DBI_USER and DBI_PASS environmental variables, type:</p> | |
| 143 <div class="ExampleBox"> | |
| 144 % DBSchemaTablesToTextFiles.pl mysql</div> | |
| 145 <p>To describe all tables in mysql and test schemas on a MySQL server running on a remote machine | |
| 146 using explicit username/password and capturing the ouput into a DescribeTables.csv file, type:</p> | |
| 147 <div class="ExampleBox"> | |
| 148 % DBSchemaTablesToTextFiles.pl --dbdriver mysql --dbuser <name> | |
| 149 --dbpassword <pasword> --dbname mysql --dbhost | |
| 150 <mysqlhostname.org> -r DescribeTable -m describetable | |
| 151 -o mysql test</div> | |
| 152 <p>To describe all tables in SCOTT schema in Oracle running on a remote machine using explicit | |
| 153 username/password and capturing the ouput into a DescribeAllTable.tsv file, type:</p> | |
| 154 <div class="ExampleBox"> | |
| 155 % DBSchemaTablesToTextFiles.pl --dbdriver Oracle --dbuser <name> | |
| 156 --dbpassword <pasword> --dbhost <oraclehostname.com> | |
| 157 -r DescribeAllTable -m describetable --outdelim tab --quote no | |
| 158 -o SCOTT</div> | |
| 159 <p>To export data in all tables in mysql and test schemas on a MySQL server running at a local | |
| 160 machine using explicit username/password and capturing the data in TSV file for each table with empty | |
| 161 values substitued with NULL and clob/blob data, type:</p> | |
| 162 <div class="ExampleBox"> | |
| 163 % DBSchemaTablesToTextFiles.pl --dbdriver Oracle --dbuser <name> | |
| 164 --dbpassword <pasword> -r ExportTables --outdelim tab --quote no | |
| 165 --replacenullstr "NULL" -m exportdata --exportlobs no --numoutfiles | |
| 166 multiple -o user user_info</div> | |
| 167 <p> | |
| 168 </p> | |
| 169 <h2>AUTHOR</h2> | |
| 170 <p><a href="mailto:msud@san.rr.com">Manish Sud</a></p> | |
| 171 <p> | |
| 172 </p> | |
| 173 <h2>SEE ALSO</h2> | |
| 174 <p><a href="./DBSQLToTextFiles.html">DBSQLToTextFiles.pl</a>, <a href="./DBTablesToTextFiles.html">DBTablesToTextFiles.pl</a> | |
| 175 </p> | |
| 176 <p> | |
| 177 </p> | |
| 178 <h2>COPYRIGHT</h2> | |
| 179 <p>Copyright (C) 2015 Manish Sud. All rights reserved.</p> | |
| 180 <p>This file is part of MayaChemTools.</p> | |
| 181 <p>MayaChemTools is free software; you can redistribute it and/or modify it under | |
| 182 the terms of the GNU Lesser General Public License as published by the Free | |
| 183 Software Foundation; either version 3 of the License, or (at your option) | |
| 184 any later version.</p> | |
| 185 <p> </p><p> </p><div class="DocNav"> | |
| 186 <table width="100%" border=0 cellpadding=0 cellspacing=2> | |
| 187 <tr align="left" valign="top"><td width="33%" align="left"><a href="./CalculatePhysicochemicalProperties.html" title="CalculatePhysicochemicalProperties.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./DBSQLToTextFiles.html" title="DBSQLToTextFiles.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>DBSchemaTablesToTextFiles.pl</strong></td></tr> | |
| 188 </table> | |
| 189 </div> | |
| 190 <br /> | |
| 191 <center> | |
| 192 <img src="../../images/h2o2.png"> | |
| 193 </center> | |
| 194 </body> | |
| 195 </html> |