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comparison mayachemtools/docs/modules/man3/PeriodicTable.3 @ 0:73ae111cf86f draft
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124 .\" ======================================================================== | |
125 .\" | |
126 .IX Title "PERIODICTABLE 1" | |
127 .TH PERIODICTABLE 1 "2015-03-29" "perl v5.14.2" "MayaChemTools" | |
128 .\" For nroff, turn off justification. Always turn off hyphenation; it makes | |
129 .\" way too many mistakes in technical documents. | |
130 .if n .ad l | |
131 .nh | |
132 .SH "NAME" | |
133 PeriodicTable | |
134 .SH "SYNOPSIS" | |
135 .IX Header "SYNOPSIS" | |
136 use PeriodicTable; | |
137 .PP | |
138 use PeriodicTable qw(:all); | |
139 .SH "DESCRIPTION" | |
140 .IX Header "DESCRIPTION" | |
141 \&\fBPeriodicTable\fR module provides the following functions: | |
142 .PP | |
143 GetElementMostAbundantNaturalIsotopeData, | |
144 GetElementMostAbundantNaturalIsotopeMass, | |
145 GetElementMostAbundantNaturalIsotopeMassNumber, GetElementNaturalIsotopeAbundance, | |
146 GetElementNaturalIsotopeCount, GetElementNaturalIsotopeMass, | |
147 GetElementNaturalIsotopesData, GetElementPropertiesData, | |
148 GetElementPropertiesNames, GetElementPropertiesNamesAndUnits, | |
149 GetElementPropertyUnits, GetElements, GetElementsByAmericanStyleGroupLabel, | |
150 GetElementsByEuropeanStyleGroupLabel, GetElementsByGroupName, | |
151 GetElementsByGroupNumber, GetElementsByPeriodNumber, | |
152 GetIUPACGroupNumberFromAmericanStyleGroupLabel, | |
153 GetIUPACGroupNumberFromEuropeanStyleGroupLabel, IsElement, | |
154 IsElementNaturalIsotopeMassNumber, IsElementProperty | |
155 .SH "METHODS" | |
156 .IX Header "METHODS" | |
157 .IP "\fBGetElements\fR" 4 | |
158 .IX Item "GetElements" | |
159 .Vb 2 | |
160 \& @ElementSymbols = GetElements(); | |
161 \& $ElementSymbolsRef = GetElements(); | |
162 .Ve | |
163 .Sp | |
164 Returns an array or a reference to an array of known element symbols | |
165 .IP "\fBGetElementsByGroupName\fR" 4 | |
166 .IX Item "GetElementsByGroupName" | |
167 .Vb 2 | |
168 \& @ElementSymbols = GetElementsByGroupName($GroupName); | |
169 \& $ElementSymbolsRef = GetElementsByGroupName($GroupName); | |
170 .Ve | |
171 .Sp | |
172 Returns an array or a reference to an array of element symbols for a specified \fIGroupName\fR. | |
173 Supported \fIGroupName\fR values are: \fIAlkali metals, Alkaline earth metals, Coinage metals, Pnictogens, | |
174 Chalcogens, Halogens, Noble gases\fR; Additionally, usage of \fILanthanides\fR (Lanthanoids) | |
175 and \fIActinides\fR (Actinoids) is also supported. | |
176 .IP "\fBGetElementsByGroupNumber\fR" 4 | |
177 .IX Item "GetElementsByGroupNumber" | |
178 .Vb 2 | |
179 \& @ElementSymbols = GetElementsByGroupNumber($GroupNumber); | |
180 \& $ElementSymbolsRef = GetElementsByGroupNumber($GroupNumber); | |
181 .Ve | |
182 .Sp | |
183 Returns an array or a reference to an array of element symbols for a specified \fIGroupNumber\fR | |
184 .IP "\fBGetElementsByAmericanStyleGroupLabel\fR" 4 | |
185 .IX Item "GetElementsByAmericanStyleGroupLabel" | |
186 .Vb 2 | |
187 \& @ElementSymbols = GetElementsByAmericanStyleGroupLabel($GroupLabel); | |
188 \& $ElementSymbolsRef = GetElementsByAmericanStyleGroupLabel($GroupLabel); | |
189 .Ve | |
190 .Sp | |
191 Returns an array or a reference to an array of element symbols for a specified American | |
192 style \fIGroupLabel\fR. Valid values for Amercian style group labels: \fI\s-1IA\s0 to \s-1VIIIA\s0, \s-1IB\s0 to \s-1VIIIB\s0, \s-1VIII\s0\fR. | |
193 .IP "\fBGetElementsByEuropeanStyleGroupLabel\fR" 4 | |
194 .IX Item "GetElementsByEuropeanStyleGroupLabel" | |
195 .Vb 2 | |
196 \& @ElementSymbols = GetElementsByEuropeanStyleGroupLabel($GroupLabel); | |
197 \& $ElementSymbolsRef = GetElementsByEuropeanStyleGroupLabel($GroupLabel); | |
198 .Ve | |
199 .Sp | |
200 Returns an array or a reference to an array of element symbols for a specified European | |
201 style \fIGroupLabel\fR. Valid values for European style group labels: \fI\s-1IA\s0 to \s-1VIIIA\s0, \s-1IB\s0 to \s-1VIIIB\s0, \s-1VIII\s0\fR. | |
202 .IP "\fBGetElementsByPeriodNumber\fR" 4 | |
203 .IX Item "GetElementsByPeriodNumber" | |
204 .Vb 2 | |
205 \& @ElementSymbols = GetElementsByPeriodNumber($PeriodNumber); | |
206 \& $ElementSymbolsRef = GetElementsByPeriodNumber($PeriodNumber); | |
207 .Ve | |
208 .Sp | |
209 Returns an array or a reference to an array of element symbols for a specified \fIPeriodNumber\fR. | |
210 .IP "\fBGetElementMostAbundantNaturalIsotopeData\fR" 4 | |
211 .IX Item "GetElementMostAbundantNaturalIsotopeData" | |
212 .Vb 4 | |
213 \& @IsotopeData = GetElementMostAbundantNaturalIsotopeData( | |
214 \& $ElementID); | |
215 \& $IsotopeDataRef = GetElementMostAbundantNaturalIsotopeData( | |
216 \& $ElementID); | |
217 .Ve | |
218 .Sp | |
219 Returns an array or reference to an array containing data for most abundant isotope of | |
220 an element specfied by element symbol or atomic number. Isotope data arrays contain these | |
221 values: \fIAtomicNumber, IsotopeSymbol, MassNumber, RelativeAtomicMass, and NaturalAbundance\fR. | |
222 .IP "\fBGetElementMostAbundantNaturalIsotopeMassNumber\fR" 4 | |
223 .IX Item "GetElementMostAbundantNaturalIsotopeMassNumber" | |
224 .Vb 1 | |
225 \& $MassNumber = GetElementMostAbundantNaturalIsotopeMassNumber($ElementID); | |
226 .Ve | |
227 .Sp | |
228 Returns mass number of most abundant natural isotope of an element specfied by element | |
229 symbol or atomic number | |
230 .IP "\fBGetElementNaturalIsotopeCount\fR" 4 | |
231 .IX Item "GetElementNaturalIsotopeCount" | |
232 .Vb 1 | |
233 \& $IsotopeCount = GetElementNaturalIsotopeCount($ElementID); | |
234 .Ve | |
235 .Sp | |
236 Returns natural isotope count for an element specfied by element symbol or | |
237 atomic number | |
238 .IP "\fBGetElementNaturalIsotopesData\fR" 4 | |
239 .IX Item "GetElementNaturalIsotopesData" | |
240 .Vb 2 | |
241 \& $DataHashRef = GetElementNaturalIsotopesData($ElementID, | |
242 \& [$MassNumber]); | |
243 .Ve | |
244 .Sp | |
245 Reurns a reference to a hash containingall available isotope data for an element specified | |
246 using element symbol or aromic number; an optional mass number indicates retrieve data | |
247 for a specific isotope | |
248 .IP "\fBGetElementNaturalIsotopeAbundance\fR" 4 | |
249 .IX Item "GetElementNaturalIsotopeAbundance" | |
250 .Vb 2 | |
251 \& $Abundance = GetElementNaturalIsotopeAbundance($ElementID, | |
252 \& $MassNumber); | |
253 .Ve | |
254 .Sp | |
255 Returns percent abundance of natural isotope for an element with specfic mass | |
256 number. | |
257 .IP "\fBGetElementMostAbundantNaturalIsotopeMass\fR" 4 | |
258 .IX Item "GetElementMostAbundantNaturalIsotopeMass" | |
259 .Vb 2 | |
260 \& $RelativeAtomicMass = GetElementMostAbundantNaturalIsotopeMass( | |
261 \& $ElementID); | |
262 .Ve | |
263 .Sp | |
264 Returns relative atomic mass of most abundant isotope for an element specified using | |
265 element symbol or aromic number. | |
266 .IP "\fBGetElementNaturalIsotopeMass\fR" 4 | |
267 .IX Item "GetElementNaturalIsotopeMass" | |
268 .Vb 2 | |
269 \& $RelativeAtomicMass = GetElementNaturalIsotopeMass($ElementID, | |
270 \& $MassNumber); | |
271 .Ve | |
272 .Sp | |
273 Returns relative atomic mass of an element with specfic mass number. | |
274 .IP "\fBGetElementPropertiesData\fR" 4 | |
275 .IX Item "GetElementPropertiesData" | |
276 .Vb 1 | |
277 \& $PropertyDataHashRef = GetElementPropertiesData($ElementID); | |
278 .Ve | |
279 .Sp | |
280 Returns a reference to a hash containing all available properties data for an element | |
281 specified using element symbol or atomic number. | |
282 .IP "\fBGetElementPropertyName\fR" 4 | |
283 .IX Item "GetElementPropertyName" | |
284 .Vb 1 | |
285 \& $PropertyValue = GetElement<PropertyName>($ElementID); | |
286 .Ve | |
287 .Sp | |
288 Returns value of an element for a element specified using element symbol or atomic number. | |
289 .Sp | |
290 These functions are not defined in this modules; these are implemented on-the-fly using | |
291 Perl's \s-1AUTOLOAD\s0 funcionality. | |
292 .Sp | |
293 Here is the list of known element \fIproperty names\fR: AllenElectronegativity, | |
294 AllredRochowElectronegativity, AtomicNumber, AtomicRadiusCalculated, | |
295 AtomicRadiusEmpirical, AtomicWeight, Block, BoilingPoint, BondLength, | |
296 BrinellHardness, BulkModulus, Classification, CoefficientOfLinearExpansion, Color, | |
297 CommonValences, LowestCommonValence, HighestCommonValence, | |
298 CommonOxidationNumbers, LowestCommonOxidationNumber, HighestCommonOxidationNumber, | |
299 CovalentRadiusEmpirical, CriticalTemperature, DensityOfSolid, DiscoveredAt, DiscoveredBy, | |
300 DiscoveredWhen, ElectricalResistivity, ElectronAffinity, ElementName, ElementSymbol, EnthalpyOfAtmization, | |
301 EnthalpyOfFusion, EnthalpyOfVaporization, FirstIonizationEnergy, GroundStateConfiguration, GroundStateLevel, | |
302 GroupName, GroupNumber, NaturalIsotopeData, MeltingPoint, MineralHardness, MolarVolume, | |
303 MullikenJaffeElectronegativity, OriginOfName, PaulingElectronegativity, PeriodNumber, PoissonsRatio, | |
304 Reflectivity, RefractiveIndex, RigidityModulus, SandersonElectronegativity, StandardState, | |
305 SuperconductionTemperature, ThermalConductivity, VanderWaalsRadius, VelocityOfSound, VickersHardness, | |
306 YoungsModulus. | |
307 .IP "\fBGetElementPropertiesNames\fR" 4 | |
308 .IX Item "GetElementPropertiesNames" | |
309 .Vb 2 | |
310 \& @PropertyNames = GetElementPropertiesNames([$Mode]); | |
311 \& $PropertyNamesRef = GetElementPropertiesNames([$Mode]); | |
312 .Ve | |
313 .Sp | |
314 Returns names of all available element properties. Optional mode parameter controls | |
315 grouping of property names; Possible values: \fIByGroup or Alphabetical\fR. Default: | |
316 \&\fIByGroup\fR. | |
317 .IP "\fBGetElementPropertiesNamesAndUnits\fR" 4 | |
318 .IX Item "GetElementPropertiesNamesAndUnits" | |
319 .Vb 1 | |
320 \& $NameUnitsHashRef = GetElementPropertiesNamesAndUnits(); | |
321 .Ve | |
322 .Sp | |
323 Returns a reference to a hash of property names and units of all available element | |
324 properties. Names with no units contains empty strings. | |
325 .IP "\fBGetElementPropertyUnits\fR" 4 | |
326 .IX Item "GetElementPropertyUnits" | |
327 .Vb 1 | |
328 \& $Units = GetElementPropertyUnits($PropertyName); | |
329 .Ve | |
330 .Sp | |
331 Returns units for a specific element property name. An empty string is returned for | |
332 a property with no units. | |
333 .IP "\fBGetIUPACGroupNumberFromAmericanStyleGroupLabel\fR" 4 | |
334 .IX Item "GetIUPACGroupNumberFromAmericanStyleGroupLabel" | |
335 .Vb 2 | |
336 \& $GroupNumber = GetIUPACGroupNumberFromAmericanStyleGroupLabel( | |
337 \& $GroupLabel); | |
338 .Ve | |
339 .Sp | |
340 Returns \s-1IUPAC\s0 group numbers of a specific American style group label. A comma delimited | |
341 string is returned for group \s-1VIII\s0 or \s-1VIIIB\s0. | |
342 .IP "\fBGetIUPACGroupNumberFromEuropeanStyleGroupLabel\fR" 4 | |
343 .IX Item "GetIUPACGroupNumberFromEuropeanStyleGroupLabel" | |
344 .Vb 2 | |
345 \& $GroupNumber = GetIUPACGroupNumberFromEuropeanStyleGroupLabel( | |
346 \& $GroupLabel); | |
347 .Ve | |
348 .Sp | |
349 Returns \s-1IUPAC\s0 group numbers of a specific European style group label. A comma delimited | |
350 string is returned for group \s-1VIII\s0 or \s-1VIIIA\s0. | |
351 .IP "\fBIsElement\fR" 4 | |
352 .IX Item "IsElement" | |
353 .Vb 1 | |
354 \& $Status = IsElement($ElementID); | |
355 .Ve | |
356 .Sp | |
357 Returns 1 or 0 based on whether it's a known element symbol or atomic number. | |
358 .IP "\fBIsElementNaturalIsotopeMassNumber\fR" 4 | |
359 .IX Item "IsElementNaturalIsotopeMassNumber" | |
360 .Vb 1 | |
361 \& $Status = IsElementNaturalIsotopeMassNumber($ElementID, $MassNumber); | |
362 .Ve | |
363 .Sp | |
364 Returns 1 or 0 based on whether it's a valid mass number for an element symbol | |
365 or atomic number. | |
366 .IP "\fBIsElementProperty\fR" 4 | |
367 .IX Item "IsElementProperty" | |
368 .Vb 1 | |
369 \& $Status = IsElementProperty($PropertyName); | |
370 .Ve | |
371 .Sp | |
372 Returns 1 or 0 based on whether it's a valid property name. | |
373 .SH "AUTHOR" | |
374 .IX Header "AUTHOR" | |
375 Manish Sud <msud@san.rr.com> | |
376 .SH "SEE ALSO" | |
377 .IX Header "SEE ALSO" | |
378 AminoAcids.pm, NucleicAcids.pm | |
379 .SH "COPYRIGHT" | |
380 .IX Header "COPYRIGHT" | |
381 Copyright (C) 2015 Manish Sud. All rights reserved. | |
382 .PP | |
383 This file is part of MayaChemTools. | |
384 .PP | |
385 MayaChemTools is free software; you can redistribute it and/or modify it under | |
386 the terms of the \s-1GNU\s0 Lesser General Public License as published by the Free | |
387 Software Foundation; either version 3 of the License, or (at your option) | |
388 any later version. |