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20 <h2>NAME</h2>
21 <p>AtomicDescriptors - AtomicDescriptors class</p>
22 <p>
23 </p>
24 <h2>SYNOPSIS</h2>
25 <p>use AtomicDescriptors::AtomicDescriptors;</p>
26 <p>use AtomicDescriptors::AtomicDescriptors qw(:all);</p>
27 <p>
28 </p>
29 <h2>DESCRIPTION</h2>
30 <p><strong>AtomicDescriptors</strong> base class used to derive all other atomic descriptors classes provides the following methods:</p>
31 <p>new, GetDescriptorValue, GetDescriptorValues,
32 IsDescriptorsGenerationSuccessful, SetDescriptorValue</p>
33 <p><strong>AtomicDescriptors</strong> class is derived from <strong>ObjectProperty</strong> base class which provides methods not
34 explicitly defined in <strong>Fingerprints</strong> or <strong>ObjectProperty</strong> classes using Perl's AUTOLOAD functionality.
35 These methods are generated on-the-fly for a specified object property:</p>
36 <div class="OptionsBox">
37 Set&lt;PropertyName&gt;(&lt;PropertyValue&gt;);
38 <br/> $PropertyValue = Get&lt;PropertyName&gt;();
39 <br/> Delete&lt;PropertyName&gt;();</div>
40 <p>
41 </p>
42 <h2>METHODS</h2>
43 <dl>
44 <dt><strong><a name="new" class="item"><strong>new</strong></a></strong></dt>
45 <dd>
46 <div class="OptionsBox">
47 $NewAtomicDescriptors = new AtomicDescriptors::
48 AtomicDescriptors(%NamesAndValues);</div>
49 <p>Using specified <em>AtomicDescriptors</em> property names and values hash, <strong>new</strong> method creates a new object
50 and returns a reference to newly created <strong>AtomicDescriptors</strong> object. By default, following properties are
51 initialized:</p>
52 <div class="OptionsBox">
53 Molecule = '';
54 <br/> Type = '';
55 <br/> IgnoreHydrogens = 0;</div>
56 </dd>
57 <dt><strong><a name="getdescriptorvalue" class="item"><strong>GetDescriptorValue</strong></a></strong></dt>
58 <dd>
59 <div class="OptionsBox">
60 $Value = $AtomicDescriptors-&gt;GetDescriptorValue($Atom);</div>
61 <p>Returns calculated atomic descriptor <em>Value</em> for specified <em>Atom</em>.</p>
62 </dd>
63 <dt><strong><a name="getdescriptorvalues" class="item"><strong>GetDescriptorValues</strong></a></strong></dt>
64 <dd>
65 <div class="OptionsBox">
66 %Values = $AtomicDescriptors-&gt;GetDescriptorValues();</div>
67 <p>Returns calculated atomic descriptor values for all atoms as a hash with atom ID
68 and atomic descriptor values as key/value pairs.</p>
69 </dd>
70 <dt><strong><a name="isdescriptorsgenerationsuccessful" class="item"><strong>IsDescriptorsGenerationSuccessful</strong></a></strong></dt>
71 <dd>
72 <div class="OptionsBox">
73 $Status = $AtomicDescriptors-&gt;
74 IsDescriptorsGenerationSuccessful();</div>
75 <p>Returns 1 or 0 based on whether atomic desctiptors calculations was successful.
76 For a successful atomic descriptors calculation, all atoms must have a value of other
77 than a string <em>None</em>.</p>
78 </dd>
79 <dt><strong><a name="setdescriptorvalue" class="item"><strong>SetDescriptorValue</strong></a></strong></dt>
80 <dd>
81 <div class="OptionsBox">
82 $AtomicDescriptors-&gt;SetDescriptorValue($Atom, $Value);</div>
83 <p>Sets specified atomic descriptor <em>Value</em> for <em>Atom</em> and returns <em>$AtomicDescriptors</em>.</p>
84 </dd>
85 </dl>
86 <p>
87 </p>
88 <h2>AUTHOR</h2>
89 <p><a href="mailto:msud@san.rr.com">Manish Sud</a></p>
90 <p>
91 </p>
92 <h2>SEE ALSO</h2>
93 <p><a href="./demo.html">demo</a>
94 </p>
95 <p>
96 </p>
97 <h2>COPYRIGHT</h2>
98 <p>Copyright (C) 2015 Manish Sud. All rights reserved.</p>
99 <p>This file is part of MayaChemTools.</p>
100 <p>MayaChemTools is free software; you can redistribute it and/or modify it under
101 the terms of the GNU Lesser General Public License as published by the Free
102 Software Foundation; either version 3 of the License, or (at your option)
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