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## NAME

NucleicAcids

## SYNOPSIS

use NucleicAcids;

use NucleicAcids qw(:all);

## DESCRIPTION

NucleicAcids module the provides the following functions:

GetNucleicAcidPropertiesData, GetNucleicAcidPropertiesNames, GetNucleicAcids, GetNucleicAcidsByType, IsNucleicAcid, IsNucleicAcidProperty, IsNucleicAcidType

## Functions

GetNucleicAcids
  (@Names) = GetNucleicAcids([$NameType]);
  $NamesRef = GetNucleicAcids([$NameType]);

  Returns an array or a reference to an array containing names of nucleic acids as a code or nucleic acid name controlled by optional parameter NameType. By default, nucleic acids names are returned as the code. Possible values for NameType: Code or Name.

GetNucleicAcidsByType
  (@Names) = GetNucleicAcidsByType([$Type, $NameType]);
  $NamesRef = GetNucleicAcidsByType([$Type, $NameType]);

  Returns an array or a reference to an array containing names of nucleic acids specified by parameter Type as a code or name controlled by optional parameter NameType. Default values for Type: Nucleoside. Default value for NameType: Code. Possible values for Type: Nucleobase, Nucleoside, Deoxynucleoside, Nucleotide, Deoxynucleotide. Possible values for NameType: Code or Name.

GetNucleicAcidPropertiesData
  $DataHashRef = GetNucleicAcidPropertiesData($NucleicAcidID);

  Returns a reference to hash containing property names and values for a specified NucleicAcidID.

GetNucleicAcidPropertyName
  $Value = GetNucleicAcid<PropertyName>($NucleicAcidID);

  Returns nucleic acid property value for a specified NucleicAcidID. This function is implemented on-the-fly using Perl's AUTOLOAD functionality.

GetNucleicAcidPropertiesNames
  @Names = GetNucleicAcidPropertiesNames([$Mode]);
  $NamesRef = GetNucleicAcidPropertiesNames([$Mode]);

  Returns an array or a reference to an array containing names of properties for nucleic acids. Order of nucleic acids properties is controlled by optional parameter Mode. Possible values for Mode: Alphabetical or ByGroup; Default: ByGroup.

IsNucleicAcid
  $Status = IsNucleicAcid($NucleicAcidID);

  Returns 1 or 0 based on whether it's a known nucleic acid ID.

IsNucleicAcidProperty
  $Status = IsNucleicAcid($PropertyName);

  Returns 1 or 0 based on whether it's a known nucleic acid property name.

IsNucleicAcidType
  $Status = IsNucleicAcidType();

  Returns 1 or 0 based on whether it's a known nucleic acid type.

## AUTHOR

Manish Sud

## SEE ALSO

AminoAcids.pm, PeriodicTable.pm

## COPYRIGHT

Copyright (C) 2015 Manish Sud. All rights reserved.

This file is part of MayaChemTools.

MayaChemTools is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.

Previous TOC Next | March 29, 2015 | NucleicAcids.pm