| 
0
 | 
     1 <html>
 | 
| 
 | 
     2 <head>
 | 
| 
 | 
     3 <title>MayaChemTools:Code:MolecularDescriptors::MolecularDescriptors.pm</title>
 | 
| 
 | 
     4 <meta http-equiv="content-type" content="text/html;charset=utf-8">
 | 
| 
 | 
     5 <link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css">
 | 
| 
 | 
     6 </head>
 | 
| 
 | 
     7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10">
 | 
| 
 | 
     8 <br/>
 | 
| 
 | 
     9 <center>
 | 
| 
 | 
    10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a>
 | 
| 
 | 
    11 </center>
 | 
| 
 | 
    12 <br/>
 | 
| 
 | 
    13 <pre>
 | 
| 
 | 
    14 <a name="package-MolecularDescriptors::MolecularDescriptors-"></a>   1 <span class="k">package </span><span class="i">MolecularDescriptors::MolecularDescriptors</span><span class="sc">;</span>
 | 
| 
 | 
    15    2 <span class="c">#</span>
 | 
| 
 | 
    16    3 <span class="c"># $RCSfile: MolecularDescriptors.pm,v $</span>
 | 
| 
 | 
    17    4 <span class="c"># $Date: 2015/02/28 20:49:20 $</span>
 | 
| 
 | 
    18    5 <span class="c"># $Revision: 1.14 $</span>
 | 
| 
 | 
    19    6 <span class="c">#</span>
 | 
| 
 | 
    20    7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span>
 | 
| 
 | 
    21    8 <span class="c">#</span>
 | 
| 
 | 
    22    9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span>
 | 
| 
 | 
    23   10 <span class="c">#</span>
 | 
| 
 | 
    24   11 <span class="c"># This file is part of MayaChemTools.</span>
 | 
| 
 | 
    25   12 <span class="c">#</span>
 | 
| 
 | 
    26   13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span>
 | 
| 
 | 
    27   14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span>
 | 
| 
 | 
    28   15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span>
 | 
| 
 | 
    29   16 <span class="c"># later version.</span>
 | 
| 
 | 
    30   17 <span class="c">#</span>
 | 
| 
 | 
    31   18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span>
 | 
| 
 | 
    32   19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span>
 | 
| 
 | 
    33   20 <span class="c"># for a particular purpose.  See the GNU Lesser General Public License for more</span>
 | 
| 
 | 
    34   21 <span class="c"># details.</span>
 | 
| 
 | 
    35   22 <span class="c">#</span>
 | 
| 
 | 
    36   23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span>
 | 
| 
 | 
    37   24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span>
 | 
| 
 | 
    38   25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span>
 | 
| 
 | 
    39   26 <span class="c"># Boston, MA, 02111-1307, USA.</span>
 | 
| 
 | 
    40   27 <span class="c">#</span>
 | 
| 
 | 
    41   28 
 | 
| 
 | 
    42   29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span>
 | 
| 
 | 
    43   30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span>
 | 
| 
 | 
    44   31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span>
 | 
| 
 | 
    45   32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    46   33 <span class="k">use</span> <span class="w">ObjectProperty</span><span class="sc">;</span>
 | 
| 
 | 
    47   34 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    48   35 
 | 
| 
 | 
    49   36 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span>
 | 
| 
 | 
    50   37 
 | 
| 
 | 
    51   38 <span class="i">@ISA</span> = <span class="q">qw(ObjectProperty Exporter)</span><span class="sc">;</span>
 | 
| 
 | 
    52   39 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span>
 | 
| 
 | 
    53   40 <span class="i">@EXPORT_OK</span> = <span class="q">qw()</span><span class="sc">;</span>
 | 
| 
 | 
    54   41 
 | 
| 
 | 
    55   42 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span>  <span class="cm">=></span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    56   43 
 | 
| 
 | 
    57   44 <span class="c"># Setup class variables...</span>
 | 
| 
 | 
    58   45 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    59   46 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    60   47 
 | 
| 
 | 
    61   48 <span class="c"># Class constructor...</span>
 | 
| 
 | 
    62 <a name="new-"></a>  49 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span>
 | 
| 
 | 
    63   50   <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
    64   51 
 | 
| 
 | 
    65   52   <span class="c"># Initialize object...</span>
 | 
| 
 | 
    66   53   <span class="k">my</span> <span class="i">$This</span> = <span class="s">{</span><span class="s">}</span><span class="sc">;</span>
 | 
| 
 | 
    67   54   <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span>
 | 
| 
 | 
    68   55   <span class="i">$This</span><span class="i">->_InitializeMolecularDescriptors</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    69   56 
 | 
| 
 | 
    70   57   <span class="i">$This</span><span class="i">->_InitializeMolecularDescriptorsProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    71   58 
 | 
| 
 | 
    72   59   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
    73   60 <span class="s">}</span>
 | 
| 
 | 
    74   61 
 | 
| 
 | 
    75   62 <span class="c"># Initialize object data...</span>
 | 
| 
 | 
    76   63 <span class="c">#</span>
 | 
| 
 | 
    77 <a name="_InitializeMolecularDescriptors-"></a>  64 <span class="k">sub </span><span class="m">_InitializeMolecularDescriptors</span> <span class="s">{</span>
 | 
| 
 | 
    78   65   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
    79   66 
 | 
| 
 | 
    80   67   <span class="c"># Molecule object...</span>
 | 
| 
 | 
    81   68   <span class="i">$This</span>->{<span class="w">Molecule</span>} = <span class="q">''</span><span class="sc">;</span>
 | 
| 
 | 
    82   69 
 | 
| 
 | 
    83   70   <span class="c"># Type of molecular descriptors...</span>
 | 
| 
 | 
    84   71   <span class="i">$This</span>->{<span class="w">Type</span>} = <span class="q">''</span><span class="sc">;</span>
 | 
| 
 | 
    85   72 
 | 
| 
 | 
    86   73   <span class="c"># Names and calculated value of molecular descriptors...</span>
 | 
| 
 | 
    87   74   <span class="c">#</span>
 | 
| 
 | 
    88   75   <span class="c"># The specific descriptor class, derived from this base class, populate descriptor names and values</span>
 | 
| 
 | 
    89   76   <span class="c"># arrays...</span>
 | 
| 
 | 
    90   77   <span class="c">#</span>
 | 
| 
 | 
    91   78   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    92   79   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
    93   80 
 | 
| 
 | 
    94   81   <span class="c"># Marks successful generation of descriptors...</span>
 | 
| 
 | 
    95   82   <span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>} = <span class="n">0</span><span class="sc">;</span>
 | 
| 
 | 
    96   83 
 | 
| 
 | 
    97   84 <span class="s">}</span>
 | 
| 
 | 
    98   85 
 | 
| 
 | 
    99   86 <span class="c"># Initialize class ...</span>
 | 
| 
 | 
   100 <a name="_InitializeClass-"></a>  87 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span>
 | 
| 
 | 
   101   88   <span class="c">#Class name...</span>
 | 
| 
 | 
   102   89   <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span>
 | 
| 
 | 
   103   90 <span class="s">}</span>
 | 
| 
 | 
   104   91 
 | 
| 
 | 
   105   92 
 | 
| 
 | 
   106   93 <span class="c"># Initialize object properties....</span>
 | 
| 
 | 
   107 <a name="_InitializeMolecularDescriptorsProperties-"></a>  94 <span class="k">sub </span><span class="m">_InitializeMolecularDescriptorsProperties</span> <span class="s">{</span>
 | 
| 
 | 
   108   95   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   109   96 
 | 
| 
 | 
   110   97   <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   111   98   <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span>  <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span>
 | 
| 
 | 
   112   99     <span class="i">$MethodName</span> = <span class="q">"Set${Name}"</span><span class="sc">;</span>
 | 
| 
 | 
   113  100     <span class="i">$This</span><span class="i">->$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   114  101   <span class="s">}</span>
 | 
| 
 | 
   115  102 
 | 
| 
 | 
   116  103   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   117  104 <span class="s">}</span>
 | 
| 
 | 
   118  105 
 | 
| 
 | 
   119  106 <span class="c"># Initialize descriptor names and values...</span>
 | 
| 
 | 
   120  107 <span class="c">#</span>
 | 
| 
 | 
   121 <a name="_InitializeDescriptorNamesAndValues-"></a> 108 <span class="k">sub </span><span class="m">_InitializeDescriptorNamesAndValues</span> <span class="s">{</span>
 | 
| 
 | 
   122  109   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Names</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   123  110 
 | 
| 
 | 
   124  111   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} = <span class="i">@Names</span><span class="sc">;</span>
 | 
| 
 | 
   125  112 
 | 
| 
 | 
   126  113   <span class="i">$This</span><span class="i">->_InitializeDescriptorValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   127  114 
 | 
| 
 | 
   128  115   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   129  116 <span class="s">}</span>
 | 
| 
 | 
   130  117 
 | 
| 
 | 
   131  118 <span class="c"># Initialize descriptor values...</span>
 | 
| 
 | 
   132  119 <span class="c">#</span>
 | 
| 
 | 
   133 <a name="_InitializeDescriptorValues-"></a> 120 <span class="k">sub </span><span class="m">_InitializeDescriptorValues</span> <span class="s">{</span>
 | 
| 
 | 
   134  121   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   135  122 
 | 
| 
 | 
   136  123   <span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>} = <span class="n">0</span><span class="sc">;</span>
 | 
| 
 | 
   137  124 
 | 
| 
 | 
   138  125   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   139  126 
 | 
| 
 | 
   140  127   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   141  128 <span class="s">}</span>
 | 
| 
 | 
   142  129 
 | 
| 
 | 
   143  130 <span class="c"># Set molecule object...</span>
 | 
| 
 | 
   144  131 <span class="c">#</span>
 | 
| 
 | 
   145 <a name="SetMolecule-"></a> 132 <span class="k">sub </span><span class="m">SetMolecule</span> <span class="s">{</span>
 | 
| 
 | 
   146  133   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Molecule</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   147  134 
 | 
| 
 | 
   148  135   <span class="i">$This</span>->{<span class="w">Molecule</span>} = <span class="i">$Molecule</span><span class="sc">;</span>
 | 
| 
 | 
   149  136 
 | 
| 
 | 
   150  137   <span class="c"># Weaken the reference to disable increment of reference count...</span>
 | 
| 
 | 
   151  138   <span class="i">Scalar::Util::weaken</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">Molecule</span>}<span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   152  139 
 | 
| 
 | 
   153  140   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   154  141 <span class="s">}</span>
 | 
| 
 | 
   155  142 
 | 
| 
 | 
   156  143 <span class="c"># Set type and make sure it's not already set...</span>
 | 
| 
 | 
   157  144 <span class="c">#</span>
 | 
| 
 | 
   158 <a name="SetType-"></a> 145 <span class="k">sub </span><span class="m">SetType</span> <span class="s">{</span>
 | 
| 
 | 
   159  146   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Type</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   160  147 
 | 
| 
 | 
   161  148   <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">Type</span>}<span class="s">)</span> <span class="s">{</span>
 | 
| 
 | 
   162  149     <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetType: Can't change MolecularDescriptors type:  It's already set..."</span><span class="sc">;</span>
 | 
| 
 | 
   163  150   <span class="s">}</span>
 | 
| 
 | 
   164  151   <span class="i">$This</span>->{<span class="w">Type</span>} = <span class="i">$Type</span><span class="sc">;</span>
 | 
| 
 | 
   165  152 
 | 
| 
 | 
   166  153   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   167  154 <span class="s">}</span>
 | 
| 
 | 
   168  155 
 | 
| 
 | 
   169  156 <span class="c"># Get molecular descriptor names as an array...</span>
 | 
| 
 | 
   170  157 <span class="c">#</span>
 | 
| 
 | 
   171 <a name="GetDescriptorNames-"></a> 158 <span class="k">sub </span><span class="m">GetDescriptorNames</span> <span class="s">{</span>
 | 
| 
 | 
   172  159   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   173  160 
 | 
| 
 | 
   174  161   <span class="k">return</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="sc">;</span>
 | 
| 
 | 
   175  162 <span class="s">}</span>
 | 
| 
 | 
   176  163 
 | 
| 
 | 
   177  164 <span class="c"># Set descriptor names...</span>
 | 
| 
 | 
   178  165 <span class="c">#</span>
 | 
| 
 | 
   179 <a name="SetDescriptorNames-"></a> 166 <span class="k">sub </span><span class="m">SetDescriptorNames</span> <span class="s">{</span>
 | 
| 
 | 
   180  167   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Names</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   181  168 
 | 
| 
 | 
   182  169   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} = <span class="i">@Names</span><span class="sc">;</span>
 | 
| 
 | 
   183  170 
 | 
| 
 | 
   184  171   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   185  172 <span class="s">}</span>
 | 
| 
 | 
   186  173 
 | 
| 
 | 
   187  174 <span class="c"># Add descriptor names...</span>
 | 
| 
 | 
   188  175 <span class="c">#</span>
 | 
| 
 | 
   189 <a name="AddDescriptorNames-"></a> 176 <span class="k">sub </span><span class="m">AddDescriptorNames</span> <span class="s">{</span>
 | 
| 
 | 
   190  177   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Names</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   191  178 
 | 
| 
 | 
   192  179   <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="cm">,</span> <span class="i">@Names</span><span class="sc">;</span>
 | 
| 
 | 
   193  180 
 | 
| 
 | 
   194  181   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   195  182 <span class="s">}</span>
 | 
| 
 | 
   196  183 
 | 
| 
 | 
   197  184 <span class="c"># Set descriptor values...</span>
 | 
| 
 | 
   198  185 <span class="c">#</span>
 | 
| 
 | 
   199 <a name="SetDescriptorValues-"></a> 186 <span class="k">sub </span><span class="m">SetDescriptorValues</span> <span class="s">{</span>
 | 
| 
 | 
   200  187   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   201  188 
 | 
| 
 | 
   202  189   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} = <span class="i">@Values</span><span class="sc">;</span>
 | 
| 
 | 
   203  190 
 | 
| 
 | 
   204  191   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   205  192 <span class="s">}</span>
 | 
| 
 | 
   206  193 
 | 
| 
 | 
   207  194 <span class="c"># Add descriptor values...</span>
 | 
| 
 | 
   208  195 <span class="c">#</span>
 | 
| 
 | 
   209 <a name="AddDescriptorValues-"></a> 196 <span class="k">sub </span><span class="m">AddDescriptorValues</span> <span class="s">{</span>
 | 
| 
 | 
   210  197   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   211  198 
 | 
| 
 | 
   212  199   <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}}<span class="cm">,</span> <span class="i">@Values</span><span class="sc">;</span>
 | 
| 
 | 
   213  200 
 | 
| 
 | 
   214  201   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
 | 
| 
 | 
   215  202 <span class="s">}</span>
 | 
| 
 | 
   216  203 
 | 
| 
 | 
   217  204 <span class="c"># Is descriptors generation successful?</span>
 | 
| 
 | 
   218  205 <span class="c">#</span>
 | 
| 
 | 
   219  206 <span class="c"># Notes:</span>
 | 
| 
 | 
   220  207 <span class="c">#   . The specific molecular descriptor class generation class sets the value of</span>
 | 
| 
 | 
   221  208 <span class="c">#     DescriptorsCalculated  to 1 after the successful generation of descriptors;</span>
 | 
| 
 | 
   222  209 <span class="c">#     otherwise, it's set to 0.</span>
 | 
| 
 | 
   223  210 <span class="c">#</span>
 | 
| 
 | 
   224 <a name="IsDescriptorsGenerationSuccessful-"></a> 211 <span class="k">sub </span><span class="m">IsDescriptorsGenerationSuccessful</span> <span class="s">{</span>
 | 
| 
 | 
   225  212   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   226  213 
 | 
| 
 | 
   227  214   <span class="k">return</span> <span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
 | 
| 
 | 
   228  215 <span class="s">}</span>
 | 
| 
 | 
   229  216 
 | 
| 
 | 
   230  217 <span class="c"># Get all descriptor values as an array...</span>
 | 
| 
 | 
   231  218 <span class="c">#</span>
 | 
| 
 | 
   232 <a name="GetDescriptorValues-"></a> 219 <span class="k">sub </span><span class="m">GetDescriptorValues</span> <span class="s">{</span>
 | 
| 
 | 
   233  220   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   234  221 
 | 
| 
 | 
   235  222   <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>}<span class="s">)</span> <span class="s">{</span>
 | 
| 
 | 
   236  223     <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} <span class="co">:</span> <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}}<span class="sc">;</span>
 | 
| 
 | 
   237  224   <span class="s">}</span>
 | 
| 
 | 
   238  225   <span class="k">else</span> <span class="s">{</span>
 | 
| 
 | 
   239  226     <span class="k">my</span><span class="s">(</span><span class="i">@DescriptorValues</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   240  227 
 | 
| 
 | 
   241  228     <span class="i">@DescriptorValues</span> = <span class="s">(</span><span class="q">'None'</span><span class="s">)</span> x <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="sc">;</span>
 | 
| 
 | 
   242  229 
 | 
| 
 | 
   243  230     <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@DescriptorValues</span> <span class="co">:</span> <span class="k">scalar</span> <span class="i">@DescriptorValues</span><span class="sc">;</span>
 | 
| 
 | 
   244  231   <span class="s">}</span>
 | 
| 
 | 
   245  232 <span class="s">}</span>
 | 
| 
 | 
   246  233 
 | 
| 
 | 
   247  234 <span class="c"># Get descriptor value for a specified descriptor name...</span>
 | 
| 
 | 
   248  235 <span class="c">#</span>
 | 
| 
 | 
   249 <a name="GetDescriptorValueByName-"></a> 236 <span class="k">sub </span><span class="m">GetDescriptorValueByName</span> <span class="s">{</span>
 | 
| 
 | 
   250  237   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Name</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   251  238   <span class="k">my</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   252  239 
 | 
| 
 | 
   253  240   <span class="i">%NamesAndValues</span> = <span class="i">$This</span><span class="i">->GetDescriptorNamesAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   254  241 
 | 
| 
 | 
   255  242   <span class="k">return</span> <span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="i">$Name</span>} ? <span class="i">$NamesAndValues</span>{<span class="i">$Name</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span>
 | 
| 
 | 
   256  243 
 | 
| 
 | 
   257  244 <span class="s">}</span>
 | 
| 
 | 
   258  245 
 | 
| 
 | 
   259  246 <span class="c"># Get calculated molecular descriptor names sand values as a to a hash with names</span>
 | 
| 
 | 
   260  247 <span class="c"># and values as key/value pairs...</span>
 | 
| 
 | 
   261  248 <span class="c">#</span>
 | 
| 
 | 
   262 <a name="GetDescriptorNamesAndValues-"></a> 249 <span class="k">sub </span><span class="m">GetDescriptorNamesAndValues</span> <span class="s">{</span>
 | 
| 
 | 
   263  250   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   264  251   <span class="k">my</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   265  252 
 | 
| 
 | 
   266  253   <span class="i">%NamesAndValues</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   267  254   <span class="i">@NamesAndValues</span>{ <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} } = <span class="i">$This</span><span class="i">->GetDescriptorValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   268  255 
 | 
| 
 | 
   269  256   <span class="k">return</span> <span class="i">%NamesAndValues</span><span class="sc">;</span>
 | 
| 
 | 
   270  257 <span class="s">}</span>
 | 
| 
 | 
   271  258 
 | 
| 
 | 
   272  259 <span class="c"># Return a string containing descriptor names and values...</span>
 | 
| 
 | 
   273  260 <span class="c">#</span>
 | 
| 
 | 
   274 <a name="_StringifyDescriptorNamesAndValues-"></a> 261 <span class="k">sub </span><span class="m">_StringifyDescriptorNamesAndValues</span> <span class="s">{</span>
 | 
| 
 | 
   275  262   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
 | 
| 
 | 
   276  263   <span class="k">my</span><span class="s">(</span><span class="i">$NamesAndValuesString</span><span class="cm">,</span> <span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">@NamesAndValuesInfo</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   277  264 
 | 
| 
 | 
   278  265   <span class="i">@NamesAndValuesInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   279  266   <span class="i">%NamesAndValues</span> = <span class="i">$This</span><span class="i">->GetDescriptorNamesAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
 | 
| 
 | 
   280  267 
 | 
| 
 | 
   281  268   <span class="k">for</span> <span class="i">$Name</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="s">)</span> <span class="s">{</span>
 | 
| 
 | 
   282  269     <span class="i">$Value</span> = <span class="i">$NamesAndValues</span>{<span class="i">$Name</span>}<span class="sc">;</span>
 | 
| 
 | 
   283  270     <span class="i">$Value</span> = <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span> || <span class="i">$Value</span> =~ <span class="q">/^None$/i</span><span class="s">)</span> ? <span class="q">'None'</span> <span class="co">:</span> <span class="i">$Value</span><span class="sc">;</span>
 | 
| 
 | 
   284  271     <span class="k">push</span> <span class="i">@NamesAndValuesInfo</span><span class="cm">,</span> <span class="q">"$Name - $Value"</span><span class="sc">;</span>
 | 
| 
 | 
   285  272   <span class="s">}</span>
 | 
| 
 | 
   286  273   <span class="k">if</span> <span class="s">(</span><span class="i">@NamesAndValuesInfo</span><span class="s">)</span> <span class="s">{</span>
 | 
| 
 | 
   287  274     <span class="i">$NamesAndValuesString</span> = <span class="q">"Names - Values: <"</span> . <span class="i">TextUtil::JoinWords</span><span class="s">(</span>\<span class="i">@NamesAndValuesInfo</span><span class="cm">,</span> <span class="q">", "</span><span class="cm">,</span> <span class="n">0</span><span class="s">)</span> . <span class="q">">"</span><span class="sc">;</span>
 | 
| 
 | 
   288  275   <span class="s">}</span>
 | 
| 
 | 
   289  276   <span class="k">else</span> <span class="s">{</span>
 | 
| 
 | 
   290  277     <span class="i">$NamesAndValuesString</span> = <span class="q">"Names - Values: < None>"</span><span class="sc">;</span>
 | 
| 
 | 
   291  278   <span class="s">}</span>
 | 
| 
 | 
   292  279   <span class="k">return</span> <span class="i">$NamesAndValuesString</span><span class="sc">;</span>
 | 
| 
 | 
   293  280 <span class="s">}</span>
 | 
| 
 | 
   294  281 
 | 
| 
 | 
   295 <a name="EOF-"></a></pre>
 | 
| 
 | 
   296 <p> </p>
 | 
| 
 | 
   297 <br />
 | 
| 
 | 
   298 <center>
 | 
| 
 | 
   299 <img src="../../../images/h2o2.png">
 | 
| 
 | 
   300 </center>
 | 
| 
 | 
   301 </body>
 | 
| 
 | 
   302 </html>
 |