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3 <title>MayaChemTools:Documentation:JoinSDFiles.pl</title>
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8 <br/>
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10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a>
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11 </center>
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12 <br/>
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13 <div class="DocNav">
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14 <table width="100%" border=0 cellpadding=0 cellspacing=2>
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15 <tr align="left" valign="top"><td width="33%" align="left"><a href="./InfoTextFiles.html" title="InfoTextFiles.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./JoinTextFiles.html" title="JoinTextFiles.html">Next</a></td><td width="34%" align="middle"><strong>JoinSDFiles.pl</strong></td><td width="33%" align="right"><a href="././code/JoinSDFiles.html" title="View source code">Code</a> | <a href="./../pdf/JoinSDFiles.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/JoinSDFiles.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/JoinSDFiles.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/JoinSDFiles.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr>
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16 </table>
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17 </div>
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18 <p>
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19 </p>
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20 <h2>NAME</h2>
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21 <p>JoinSDFiles.pl - Join multiple SDFiles into a single SDFile</p>
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22 <p>
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23 </p>
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24 <h2>SYNOPSIS</h2>
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25 <p>JoinSDFiles.pl SDFiles...</p>
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26 <p>JoinSDFiles.pl [<strong>-h, --help</strong>] [<strong>-o, --overwrite</strong>] [<strong>-r, --root</strong> rootname]
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27 [<strong>-w, --workingdir</strong> dirname] SDFiles...</p>
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28 <p>
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29 </p>
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30 <h2>DESCRIPTION</h2>
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31 <p>Multiple <em>SDFiles</em> are joined to generate a single SDFile. The file names
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32 are separated by spaces. The valid file extensions are <em>.sdf</em> and <em>.sd</em>.
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33 All other file names are ignored. All the SD files in a current directory can be
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34 specified either by <em>*.sdf</em> or the current directory name.</p>
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35 <p>
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36 </p>
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37 <h2>OPTIONS</h2>
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38 <dl>
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39 <dt><strong><strong>-h, --help</strong></strong></dt>
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40 <dd>
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41 <p>Print this help message.</p>
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42 </dd>
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43 <dt><strong><strong>-o, --overwrite</strong></strong></dt>
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44 <dd>
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45 <p>Overwrite existing files.</p>
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46 </dd>
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47 <dt><strong><strong>-r, --root</strong> <em>rootname</em></strong></dt>
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48 <dd>
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49 <p>New SD file name is generated using the root: <Root>.sdf. Default file
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50 name:<FirstSDFileName>1To<Count>Joined.sdf.</p>
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51 </dd>
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52 <dt><strong><strong>-w, --workingdir</strong> <em>dirname</em></strong></dt>
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53 <dd>
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54 <p>Location of working directory. Default: current directory.</p>
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55 </dd>
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56 </dl>
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57 <p>
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58 </p>
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59 <h2>EXAMPLES</h2>
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60 <p>To join SD files, type:</p>
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61 <div class="ExampleBox">
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62 % JoinSDFiles.pl -o Sample1.sdf Sample2.sdf
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63 <br/>% JoinSDFiles.pl -o *.sdf</div>
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64 <p>To join all Sample*.sdf files in a directory, SomeDir, and generate a new file NewSample.sdf, type:</p>
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65 <div class="ExampleBox">
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66 % JoinSDFiles.pl -r NewSample -w SomeDir -o *.sdf</div>
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67 <p>
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68 </p>
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69 <h2>AUTHOR</h2>
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70 <p><a href="mailto:msud@san.rr.com">Manish Sud</a></p>
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71 <p>
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72 </p>
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73 <h2>SEE ALSO</h2>
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74 <p><a href="./InfoSDFiles.html">InfoSDFiles.pl</a>, <a href="./MolFilesToSD.html">MolFilesToSD.pl</a>, <a href="./SDToMolFiles.html">SDToMolFiles.pl</a>, <a href="./SplitSDFiles.html">SplitSDFiles.pl</a>
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75 </p>
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76 <p>
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77 </p>
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78 <h2>COPYRIGHT</h2>
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79 <p>Copyright (C) 2015 Manish Sud. All rights reserved.</p>
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80 <p>This file is part of MayaChemTools.</p>
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81 <p>MayaChemTools is free software; you can redistribute it and/or modify it under
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82 the terms of the GNU Lesser General Public License as published by the Free
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83 Software Foundation; either version 3 of the License, or (at your option)
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84 any later version.</p>
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85 <p> </p><p> </p><div class="DocNav">
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86 <table width="100%" border=0 cellpadding=0 cellspacing=2>
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87 <tr align="left" valign="top"><td width="33%" align="left"><a href="./InfoTextFiles.html" title="InfoTextFiles.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./JoinTextFiles.html" title="JoinTextFiles.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>JoinSDFiles.pl</strong></td></tr>
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88 </table>
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89 </div>
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90 <br />
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