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1 package HTMLUtil;
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2 #
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3 # $RCSfile: HTMLUtil.pm,v $
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4 # $Date: 2015/02/28 20:47:17 $
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5 # $Revision: 1.42 $
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6 #
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7 # Author: Manish Sud <msud@san.rr.com>
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8 #
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9 # Copyright (C) 2015 Manish Sud. All rights reserved.
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10 #
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11 # This file is part of MayaChemTools.
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12 #
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13 # MayaChemTools is free software; you can redistribute it and/or modify it under
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14 # the terms of the GNU Lesser General Public License as published by the Free
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15 # Software Foundation; either version 3 of the License, or (at your option) any
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16 # later version.
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17 #
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18 # MayaChemTools is distributed in the hope that it will be useful, but without
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19 # any warranty; without even the implied warranty of merchantability of fitness
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20 # for a particular purpose. See the GNU Lesser General Public License for more
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21 # details.
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22 #
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23 # You should have received a copy of the GNU Lesser General Public License
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24 # along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or
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25 # write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,
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26 # Boston, MA, 02111-1307, USA.
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27 #
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28
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29 use strict;
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30 use Exporter;
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31
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32 use vars qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS);
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33
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34 @ISA = qw(Exporter);
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35 @EXPORT = qw(InsertHTMLTags SetupHTMLAlignmentBegin SetupHTMLAlignmentEnd SetupHTMLButtonRef SetupHTMLDivBegin SetupHTMLDivEnd SetupHTMLEmptyLines SetupHTMLPageHeader SetupHTMLHRef SetupHTMLPageEnd SetupHTMLPageTitle SetupHTMLStyleSheetTags SetupHTMLTableHeader SetupHTMLTableEnd SetupHTMLTableColumnHeader SetupHTMLTableColumnEnd SetupHTMLTableRowHeader SetupHTMLTableRowEnd SetupHTMLTableRowHeaderValue SetupHTMLTableRowDataValue SetupJavaScriptCmds SetupStrViewerJSInitCmd SetupStrViewerJMEApplet SetupStrViewerJmolApplet SetupStrViewerChimePlugIn SetupStrViewerChem3DActiveX SetupStrViewerChemDrawActiveX SetupStrViewerChemDrawPlugIn SetupStrViewerMarvinViewApplet SetupStrViewerAccelrysActiveX);
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36 @EXPORT_OK = qw();
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37
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38 %EXPORT_TAGS = (all => [@EXPORT, @EXPORT_OK]);
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39
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40 # Default window size for various supported structure viewers...
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41 my($StrViewerWidth, $StrViewerHeight) = (250, 170);
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42
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43 # Insert specfied tags into existing tag string...
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44 sub InsertHTMLTags {
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45 my($Tag, %TagsMap) = @_;
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46 my($NewTag, $TagName, $TagValue, $TagPart1, $TagPart2);
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47
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48 $NewTag = $Tag; $TagPart1 = ""; $TagPart2 = "";
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49 ($TagPart1) = $Tag =~ /^(.*?)>/;
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50
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51 if ($TagPart1 && length($TagPart1)) {
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52 $TagPart2 = $Tag;
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53 $TagPart2 =~ s/^(.*?)>//;
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54 if ($TagPart2 && length($TagPart2)) {
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55 for $TagName (keys %TagsMap) {
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56 $TagValue = $TagsMap{$TagName};
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57 $TagPart1 .= qq( $TagName="$TagValue" );
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58 }
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59 $NewTag = "${TagPart1}>${TagPart2}";
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60 }
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61 }
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62
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63 return $NewTag;
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64 }
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65
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66 sub SetupHTMLAlignmentBegin {
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67 my($AlignmentTag, $Alignment);
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68
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69 $Alignment = (@_ == 1) ? $_[0] : "left";
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70 $AlignmentTag = qq(<$Alignment>\n);
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71
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72 return $AlignmentTag;
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73 }
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74
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75 sub SetupHTMLAlignmentEnd {
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76 my($AlignmentTag, $Alignment);
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77
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78 $Alignment = (@_ == 1) ? $_[0] : "left";
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79 $AlignmentTag = qq(</$Alignment>\n);
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80
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81 return $AlignmentTag;
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82 }
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83
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84 # Setup a button reference...
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85 sub SetupHTMLButtonRef {
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86 my($ButtonLabel, $RefFile, $ButtonTags);
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87
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88 ($ButtonLabel, $RefFile) = @_;
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89
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90 $ButtonTags = qq(<input type="button" value="$ButtonLabel" onClick="document.location='$RefFile'">);
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91 return $ButtonTags;
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92 }
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93
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94 sub SetupHTMLDivBegin {
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95 my($Id) = @_;
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96 my($DivTag);
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97
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98 $DivTag = qq(<div id="$Id">\n);
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99
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100 return $DivTag;
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101 }
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102
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103 sub SetupHTMLDivEnd {
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104 my($DivTag);
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105
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106 $DivTag = qq(</div>\n);
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107
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108 return $DivTag;
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109 }
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110 sub SetupHTMLEmptyLines {
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111 my($LineCount, $Index, $EmptyLineTags);
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112
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113 $LineCount = 1;
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114 $EmptyLineTags = qq(<p> </p>);
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115 ($LineCount) = @_;
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116 if ($LineCount > 1) {
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117 for $Index (2 .. $LineCount) {
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118 $EmptyLineTags .= qq(<p> </p>);
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119 }
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120 }
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121 return $EmptyLineTags;
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122 }
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123
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124 # Setup HTML page header...
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125 sub SetupHTMLPageHeader {
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126 my($HeaderTitle, $Stylesheet, $JavaScript, $PageHeader);
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127
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128 $HeaderTitle = ""; $Stylesheet = ""; $JavaScript = "";
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129 if (@_ == 3) {
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130 ($HeaderTitle, $Stylesheet, $JavaScript) = @_;
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131 }
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132 elsif (@_ == 2) {
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133 ($HeaderTitle, $Stylesheet) = @_;
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134 }
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135 else {
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136 ($HeaderTitle) = @_;
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137 }
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138 $PageHeader = qq(<html>\n);
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139 $PageHeader .= qq(<head>\n);
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140 $PageHeader .= qq(<title>$HeaderTitle</title>\n);
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141 $PageHeader .= qq(<meta http-equiv="content-type" content="text/html;charset=utf-8">\n);
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142 if ($Stylesheet) {
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143 $PageHeader .= qq(<link rel="stylesheet" type="text/css" href="$Stylesheet">\n);
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144 }
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145 if ($JavaScript) {
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146 $PageHeader .= qq(<script src="$JavaScript"></script>\n);
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147 }
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148 $PageHeader .= <<ENDPAGEHEADER;
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149 </head>
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150 <body>
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151 <p> </p>
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152 ENDPAGEHEADER
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153
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154 return $PageHeader;
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155 }
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156
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157 # Setup page title...
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158 sub SetupHTMLPageTitle {
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159 my($Title, $Alignment, $PageTitle);
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160
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161 $Alignment = "center";
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162 if (@_ == 2) {
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163 ($Title, $Alignment) = @_;
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164 }
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165 else {
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166 ($Title) = @_;
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167 }
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168
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169 $PageTitle=<<ENDPAGETITLE;
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170 <$Alignment>
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171 <h3>$Title</h3>
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172 </$Alignment>
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173 ENDPAGETITLE
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174
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175 return $PageTitle;
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176 }
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177
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178 # Setup HTML page end...
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179 sub SetupHTMLPageEnd {
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180 my($PageEnd, $Footer);
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181
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182 $Footer = "";
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183 if (@_ == 1) {
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184 ($Footer) = @_;
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185 }
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186 if ($Footer) {
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187 $Footer = qq(<span class="Footer">$Footer</span>);
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188 }
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189 $PageEnd=<<ENDPAGE;
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190 <center>
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191 <p> </p>
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192 $Footer
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193 </center>
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194 </body>
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195 </html>
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196 ENDPAGE
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197
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198 return $PageEnd;
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199 }
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200
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201 # Setup HTML link tags...
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202 sub SetupHTMLHRef {
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203 my($Value, $RefFile, $HRef, $Title);
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204
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205 $Title = "";
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206 if (@_ == 3) {
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207 ($Value, $RefFile, $Title) = @_;
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208 }
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209 else {
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210 ($Value, $RefFile) = @_;
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211 }
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212
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213 $HRef = qq(<a href="$RefFile");
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214 if ($Title) {
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215 $HRef .= qq( title="$Title");
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216 }
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217 $HRef .= qq(>$Value</a>);
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218 return $HRef;
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219 }
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220
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221 #
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222 sub SetupHTMLStyleSheetTags {
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223 my($StyleSheetTags);
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224
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225 $StyleSheetTags=<<ENDSTYLESHEET;
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226 body
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227 {
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228 background-color: #ffffff;
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229 font-family: Verdana, Arial, Helvetica, sans-serif;
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230 font-size: 11px;
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231 }
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232 p
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233 {
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234 font-family: Verdana, Arial, Helvetica, sans-serif;
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235 font-size: 11px;
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236 }
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237 h1
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238 {
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239 font-family: Verdana, Arial, Helvetica, sans-serif;
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240 font-size: 25px;
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241 font-weight: bold;
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242 color: #0054aa;
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243 }
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244 h2
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245 {
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246 font-family: Verdana, Arial, Helvetica, sans-serif;
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247 font-size: 18px;
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248 font-weight: bold;
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249 color: #0054aa;
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250 }
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251 h3
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252 {
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253 font-family: Verdana, Arial, Helvetica, sans-serif;
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254 font-size: 14px;
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255 font-weight: bold;
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256 color: #0054aa;
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257 }
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258 b
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259 {
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260 font-weight: bold;
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261 }
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262 td
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263 {
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264 font-family: Verdana, Arial, Helvetica, sans-serif;
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265 font-size: 11px;
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266 }
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267 th
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268 {
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269 font-family: Verdana, Arial, Helvetica, sans-serif;
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270 font-size: 11px;
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271 color: #0054aa;
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272 font-weight: bold;
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273 }
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274 .box {
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275 border-color: #000000;
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276 border-style: solid;
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277 border-top-width: 1px;
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278 border-bottom-width: 1px;
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279 border-left-width: 1px;
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280 border-right-width: 1px;
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281 }
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282 a
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283 {
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284 color: #0000bb;
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285 text-decoration: none;
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286 font-family: Verdana, Arial, Helvetica, sans-serif;
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287 font-size: 11px;
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288 }
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289 a:hover
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290 {
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291 color: #ff0000;
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292 }
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293 #tablenav {
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294 font-family: Verdana, Arial, Helvetica, sans-serif;
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295 font-size: 11px;
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296 }
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297 #tablenav td
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298 {
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299 font-family: Verdana, Arial, Helvetica, sans-serif;
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300 font-size: 11px;
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301 }
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302 #tablenav th
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303 {
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304 font-family: Verdana, Arial, Helvetica, sans-serif;
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305 font-size: 11px;
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306 font-weight: bold;
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307 }
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308 #tablenav a
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309 {
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310 color: #0000bb;
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311 text-decoration: none;
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312 font-family: Verdana, Arial, Helvetica, sans-serif;
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313 font-size: 11px;
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314 }
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315 #tablenav a:hover
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316 {
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317 color: #ff0000;
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318 }
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319 .footer
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320 {
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321 font-family: Arial, Verdana, Helvetica, sans-serif;
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322 font-size: 9px;
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323 color: #888888;
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324 }
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325 ENDSTYLESHEET
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326
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327 return $StyleSheetTags;
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328 }
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329
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330 # Setup HTML table header...
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331 sub SetupHTMLTableHeader {
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332 my($TableHeader, $BorderWidth, $CellPadding, $CellSpacing, $Width, $Height);
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333
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334 $BorderWidth = 1; $CellPadding = 2; $CellSpacing = 0; $Width = ""; $Height = "";
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335 if (@_ == 5) {
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336 ($BorderWidth, $CellPadding, $CellSpacing, $Width, $Height) = @_;
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337 }
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338 elsif (@_ == 4) {
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339 ($BorderWidth, $CellPadding, $CellSpacing, $Width) = @_;
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340 }
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341 elsif (@_ == 3) {
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342 ($BorderWidth, $CellPadding, $CellSpacing) = @_;
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343 }
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344 elsif (@_ == 2) {
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345 ($BorderWidth, $CellPadding) = @_;
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346 }
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347 elsif (@_ = 1) {
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348 ($BorderWidth) = @_;
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349 }
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350 $TableHeader = qq(<table border=$BorderWidth cellpadding=$CellPadding cellspacing=$CellSpacing);
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351 if ($Width) {
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352 $TableHeader .= qq( width=$Width);
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353 }
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354 if ($Height) {
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355 $TableHeader .= qq( height=$Height);
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356 }
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357 $TableHeader .= qq(>\n);
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358
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359 return $TableHeader;
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360 }
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361
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362 # Setup HTML table end...
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363 sub SetupHTMLTableEnd {
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364 my($TableEnd);
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365
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366 $TableEnd=<<ENDTABLE;
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367 </table>
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368 ENDTABLE
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369
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370 return $TableEnd;
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371 }
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372
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373 # Setup HTML table column header...
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374 sub SetupHTMLTableColumnHeader {
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375 my($BgColor, $Width, $ColumnHeader);
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376
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377 $BgColor = ""; $Width = "";
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378 if (@_ == 1) {
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379 ($BgColor) = @_;
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380 }
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381 elsif (@_ == 2) {
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382 ($BgColor, $Width) = @_;
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383 }
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384 $ColumnHeader = qq(<td);
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385 if ($BgColor) {
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386 $ColumnHeader .= qq( bgcolor="$BgColor")
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387 }
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388 if ($Width) {
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389 $ColumnHeader .= qq( width="$Width")
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390 }
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391 $ColumnHeader .= qq(>);
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392 return $ColumnHeader;
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393 }
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394
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395 # Setup HTML table column end...
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396 sub SetupHTMLTableColumnEnd {
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397 my($ColumnEnd);
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398
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399 $ColumnEnd = qq(</td>);
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400 return $ColumnEnd;
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401 }
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402
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403 # Setup HTML table row header...
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404 sub SetupHTMLTableRowHeader {
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405 my($RowHeader, $HAlignment, $BgColor, $VAlignment);
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406
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407 $HAlignment = "center"; $BgColor = ""; $VAlignment = "top";
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408 if (@_ == 3) {
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409 ($HAlignment, $BgColor, $VAlignment) = @_;
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410 }
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411 elsif (@_ == 2) {
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412 ($HAlignment, $BgColor) = @_;
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413 }
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414 elsif (@_ == 1) {
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415 ($HAlignment) = @_;
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416 }
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417 if ($BgColor) {
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418 $RowHeader = qq(<tr bgcolor="$BgColor" align="$HAlignment" valign="$VAlignment">);
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419 }
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420 else {
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421 $RowHeader = qq(<tr align="$HAlignment" valign="$VAlignment">);
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422 }
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423
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424 return $RowHeader;
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425 }
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426
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427 # Setup HTML table row end...
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428 sub SetupHTMLTableRowEnd {
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429 my($RowEnd);
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430
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431 $RowEnd = qq(</tr>\n);
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432 return $RowEnd;
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433 }
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434
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435 # Setup HTML table header values...
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436 sub SetupHTMLTableRowHeaderValue {
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437 my($HeaderValue, $Value);
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438
|
|
|
439 $Value = "";
|
|
|
440 if (@_ >= 1) {
|
|
|
441 ($Value) = @_;
|
|
|
442 }
|
|
|
443 if (defined $Value && length $Value) {
|
|
|
444 $HeaderValue = qq(<th>$Value</th>);
|
|
|
445 }
|
|
|
446 else {
|
|
|
447 $HeaderValue = qq(<th> </th>);
|
|
|
448 }
|
|
|
449 return $HeaderValue;
|
|
|
450 }
|
|
|
451
|
|
|
452 # Setup HTML table row data values...
|
|
|
453 sub SetupHTMLTableRowDataValue {
|
|
|
454 my($RowValues, $Value, $BgColor, $FontColor, $FontBold, $FontBoldTag1, $FontBoldTag2);
|
|
|
455
|
|
|
456 $Value = ""; $BgColor = ""; $FontColor = ""; $FontBold = "";
|
|
|
457 if (@_ == 1) {
|
|
|
458 ($Value) = @_;
|
|
|
459 }
|
|
|
460 elsif (@_ == 2) {
|
|
|
461 ($Value, $BgColor) = @_;
|
|
|
462 }
|
|
|
463 elsif (@_ == 3) {
|
|
|
464 ($Value, $BgColor, $FontColor) = @_;
|
|
|
465 }
|
|
|
466 elsif (@_ == 4) {
|
|
|
467 ($Value, $BgColor, $FontColor, $FontBold) = @_;
|
|
|
468 }
|
|
|
469 if (!(defined $Value && length $Value)) {
|
|
|
470 $Value = qq( );
|
|
|
471 }
|
|
|
472 $FontBoldTag1 = ""; $FontBoldTag2 = "";
|
|
|
473 if ($FontBold) {
|
|
|
474 $FontBoldTag1 = qq(<b>);
|
|
|
475 $FontBoldTag2 = qq(</b>);
|
|
|
476 }
|
|
|
477 if ($BgColor || $FontColor) {
|
|
|
478 my ($BgColorTag, $FontTag1, $FontTag2);
|
|
|
479
|
|
|
480 $BgColorTag = "";
|
|
|
481 if ($BgColor) {
|
|
|
482 $BgColorTag = qq( bgcolor="$BgColor");
|
|
|
483 }
|
|
|
484 $FontTag1 = ""; $FontTag2 = "";
|
|
|
485 if ($FontColor) {
|
|
|
486 $FontTag1 = qq(<font color="$FontColor">);
|
|
|
487 $FontTag2 = qq(</font>);
|
|
|
488 }
|
|
|
489 if ($FontBold) {
|
|
|
490 $RowValues = "<td" . $BgColorTag . ">" . $FontBoldTag1 . $FontTag1 . "$Value" . $FontTag2 . $FontBoldTag2 . "</td>";
|
|
|
491 }
|
|
|
492 else {
|
|
|
493 $RowValues = "<td" . $BgColorTag . ">" . $FontTag1 . "$Value" . $FontTag2 . "</td>";
|
|
|
494 }
|
|
|
495 }
|
|
|
496 elsif ($FontBold) {
|
|
|
497 $RowValues = "<td>" . $FontBoldTag1 . "$Value" . $FontBoldTag2 . "</td>";
|
|
|
498 }
|
|
|
499 else {
|
|
|
500 $RowValues = qq(<td>$Value</td>);
|
|
|
501 }
|
|
|
502 return $RowValues;
|
|
|
503 }
|
|
|
504
|
|
|
505 # Setup Java scripts command...
|
|
|
506 sub SetupJavaScriptCmds {
|
|
|
507 my(@JSCmdList) = @_;
|
|
|
508 my($JSTags, $JSCmd);
|
|
|
509
|
|
|
510 $JSTags = qq(<script>\n);
|
|
|
511 for $JSCmd (@JSCmdList) {
|
|
|
512 $JSTags .= qq($JSCmd\n);
|
|
|
513 }
|
|
|
514 $JSTags .= qq(</script>\n);
|
|
|
515
|
|
|
516 return $JSTags;
|
|
|
517 }
|
|
|
518
|
|
|
519 # Setup Java script initialize command...
|
|
|
520 sub SetupStrViewerJSInitCmd {
|
|
|
521 my($StrViewerType, $CodeBase) = @_;
|
|
|
522 my($JSTag);
|
|
|
523
|
|
|
524 $JSTag = "";
|
|
|
525 if ($StrViewerType eq "Jmol") {
|
|
|
526 $JSTag = qq(<script>jmolInitialize("$CodeBase", "JmolApplet.jar");</script>\n);
|
|
|
527 }
|
|
|
528 elsif ($StrViewerType eq "ChemDrawPlugIn" || $StrViewerType eq "ChemDrawActiveX") {
|
|
|
529 $JSTag = qq(<script>cd_includeWrapperFile("$CodeBase/");</script>\n);
|
|
|
530 }
|
|
|
531 elsif ($StrViewerType eq "Chem3DActiveX") {
|
|
|
532 }
|
|
|
533 return $JSTag;
|
|
|
534 }
|
|
|
535
|
|
|
536
|
|
|
537 # Setup Jmol applet...
|
|
|
538 sub SetupStrViewerJmolApplet {
|
|
|
539 my($MolString, $CodeBase, $ParamsMapRef, %ParamsMap, $AppletTags, $JavaScriptTags, $ReturnTags, $Name, $Code, $Archive, $Width, $Height, $ParamName, $ParamValue, $JSFileName, $UseJavaScript);
|
|
|
540 my($ProgressBar, $ProgressColor, $BoxMessage, $BoxFgColor, $BoxBgColor, $BgColor, $JMolScript);
|
|
|
541
|
|
|
542 $AppletTags = ""; $JavaScriptTags = ""; $ReturnTags = "";
|
|
|
543 $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
544 $Name = "Jmol"; $Code = "JmolApplet"; $Archive = "JmolApplet.jar"; $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
545 $ProgressBar = "true"; $ProgressColor = "#0000ff"; $BgColor = "#000000";
|
|
|
546 $BoxMessage = "Setting up JmolApplet..."; $BoxFgColor = "#000000"; $BoxBgColor = "#ffffff";
|
|
|
547 $UseJavaScript = 0; $JSFileName = "";
|
|
|
548 $JMolScript = "select *; set frank off; wireframe on; spacefill off";
|
|
|
549
|
|
|
550 PARAMS: {
|
|
|
551 if (@_ == 3) { ($MolString, $CodeBase, $ParamsMapRef) = @_; last PARAMS; }
|
|
|
552 ($MolString, $CodeBase) = @_;
|
|
|
553 }
|
|
|
554
|
|
|
555 if ($ParamsMapRef) {
|
|
|
556 %ParamsMap = %$ParamsMapRef;
|
|
|
557 if (exists $ParamsMap{usejavascript} ) { $JSFileName = $ParamsMap{usejavascript}; $UseJavaScript = 1; $ParamsMap{usejavascript} = ""; }
|
|
|
558 if (exists $ParamsMap{name} ) { $Name = $ParamsMap{name}; $ParamsMap{name} = ""; }
|
|
|
559 if (exists $ParamsMap{code} ) { $Code = $ParamsMap{code}; $ParamsMap{code} = ""; }
|
|
|
560 # if (exists $ParamsMap{archive} ) { $Archive = $ParamsMap{archive}; $ParamsMap{archive} = ""; }
|
|
|
561 if (exists $ParamsMap{archive} ) { $ParamsMap{archive} = ""; }
|
|
|
562 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
563 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
564 if (exists $ParamsMap{progressbar} ) { $ProgressBar = $ParamsMap{progressbar}; $ParamsMap{progressbar} = ""; }
|
|
|
565 if (exists $ParamsMap{progresscolor} ) { $ProgressColor = $ParamsMap{progresscolor}; $ParamsMap{progresscolor} = ""; }
|
|
|
566 if (exists $ParamsMap{boxmessage} ) { $BoxMessage = $ParamsMap{boxmessage}; $ParamsMap{boxmessage} = ""; }
|
|
|
567 if (exists $ParamsMap{script} ) { $JMolScript = $ParamsMap{script}; $ParamsMap{script} = ""; }
|
|
|
568 if (exists $ParamsMap{bgcolor}) {
|
|
|
569 $BgColor = $ParamsMap{bgcolor};
|
|
|
570 if (length($BgColor)) {
|
|
|
571 if ($BgColor =~ /black/i || $BgColor =~ /#000000/ ) {
|
|
|
572 $BoxFgColor = "#ffffff";
|
|
|
573 $BoxBgColor = "#000000";
|
|
|
574 }
|
|
|
575 }
|
|
|
576 }
|
|
|
577 if (exists $ParamsMap{boxbgcolor} ) { $BoxBgColor = $ParamsMap{boxbgcolor}; $ParamsMap{boxbgcolor} = ""; }
|
|
|
578 if (exists $ParamsMap{boxfgcolor} ) { $BoxFgColor = $ParamsMap{boxfgcolor}; $ParamsMap{boxfgcolor} = ""; }
|
|
|
579 }
|
|
|
580
|
|
|
581 $MolString =~ s/(\r\n)|(\r)|(\n)/|/g;
|
|
|
582 if ($UseJavaScript) {
|
|
|
583 $JavaScriptTags = qq(\n<script>\n);
|
|
|
584 my($Size) = ($Width > $Height ) ? $Width : $Height;
|
|
|
585 $JavaScriptTags .= qq(var $Name = \n);
|
|
|
586 my(@MolLines) = split /\|/, $MolString;
|
|
|
587 my($LineIndex);
|
|
|
588 $JavaScriptTags .= qq("$MolLines[0]\\n");
|
|
|
589 for $LineIndex (1 .. $#MolLines) {
|
|
|
590 $JavaScriptTags .= qq( + \n"$MolLines[$LineIndex]\\n");
|
|
|
591 }
|
|
|
592 $JavaScriptTags .= qq(;\n);
|
|
|
593 $JavaScriptTags .= qq(jmolSetAppletColor("$BgColor", "$BoxBgColor", "$BoxFgColor", "$ProgressColor");\n);
|
|
|
594 # "set frank off turns" off JMol logo. For wireframe display; use wireframe on; spacefill off...
|
|
|
595 # $JavaScriptTags .= qq(jmolAppletInline($Size, $Name);\n);
|
|
|
596 $JavaScriptTags .= qq(jmolAppletInline([$Width,$Height], $Name, \"$JMolScript\");\n);
|
|
|
597 $JavaScriptTags .= qq(</script>\n);
|
|
|
598 $ReturnTags = $JavaScriptTags;
|
|
|
599 }
|
|
|
600 else {
|
|
|
601 # Setup applet header...
|
|
|
602 $AppletTags = qq(\n<applet name="$Name" id="$Name" code="$Code" archive="$Archive" codebase="$CodeBase" width="$Width" height="$Height">\n);
|
|
|
603
|
|
|
604 # Setup molecule data...
|
|
|
605 $AppletTags .= qq(<param name="loadInline" value="$MolString">\n);
|
|
|
606
|
|
|
607 # Setup prograss bar...
|
|
|
608 $AppletTags .= qq(<param name="progressbar" value="$ProgressBar">\n<param name="progresscolor" value="$ProgressColor">\n<param name="boxmessage" value="$BoxMessage">\n<param name="boxbgcolor" value="$BoxBgColor">\n<param name="boxfgcolor" value="$BoxFgColor">\n);
|
|
|
609
|
|
|
610 # "set frank off turns" off JMol logo. For wireframe display; use wireframe on; spacefill off...
|
|
|
611 $AppletTags .= qq(<param name="script" value="$JMolScript">);
|
|
|
612
|
|
|
613 #Setup other parameters...
|
|
|
614 for $ParamName (sort keys %ParamsMap) {
|
|
|
615 $ParamValue = $ParamsMap{$ParamName};
|
|
|
616 if (length $ParamValue) {
|
|
|
617 $AppletTags .= qq(<param name="$ParamName" value="$ParamValue">\n);
|
|
|
618 }
|
|
|
619 }
|
|
|
620 #Finish it up...
|
|
|
621 $AppletTags .= qq(</applet>\n);
|
|
|
622 $ReturnTags = $AppletTags;
|
|
|
623 }
|
|
|
624 return $ReturnTags;
|
|
|
625 }
|
|
|
626
|
|
|
627 # Setup JME applet...
|
|
|
628 sub SetupStrViewerJMEApplet {
|
|
|
629 my($MolString, $CodeBase, $ParamsMapRef, %ParamsMap, $AppletTags, $Name, $Code, $Archive, $Width, $Height, $ParamName, $ParamValue);
|
|
|
630 my($Options);
|
|
|
631
|
|
|
632 $AppletTags = ""; $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
633 $Name = "JME"; $Code = "JME"; $Archive = "JME.jar"; $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
634 $Options = "depict";
|
|
|
635
|
|
|
636 if (@_ == 3) {
|
|
|
637 ($MolString, $CodeBase, $ParamsMapRef) = @_;
|
|
|
638 }
|
|
|
639 else {
|
|
|
640 ($MolString, $CodeBase) = @_;
|
|
|
641 }
|
|
|
642 $MolString =~ s/(\r\n)|(\r)|(\n)/|/g;
|
|
|
643
|
|
|
644 if ($ParamsMapRef) {
|
|
|
645 %ParamsMap = %$ParamsMapRef;
|
|
|
646 if (exists $ParamsMap{name} ) { $Name = $ParamsMap{name}; $ParamsMap{name} = ""; }
|
|
|
647 if (exists $ParamsMap{code} ) { $Code = $ParamsMap{code}; $ParamsMap{code} = ""; }
|
|
|
648 if (exists $ParamsMap{archive} ) { $Archive = $ParamsMap{archive}; $ParamsMap{archive} = ""; }
|
|
|
649 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
650 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
651 if (exists $ParamsMap{options} ) { $Options = $ParamsMap{options}; $ParamsMap{options} = ""; }
|
|
|
652 }
|
|
|
653
|
|
|
654 # Setup applet header...
|
|
|
655 $AppletTags = qq(\n<applet name="$Name" id="$Name" code="$Code" archive="$Archive" codebase="$CodeBase" width="$Width" height="$Height">\n);
|
|
|
656
|
|
|
657 # Setup molecule data...
|
|
|
658 $AppletTags .= qq(<param name="mol" value="$MolString">\n<param name="options" value="$Options">\n);
|
|
|
659
|
|
|
660 #Setup other parameters...
|
|
|
661 for $ParamName (sort keys %ParamsMap) {
|
|
|
662 $ParamValue = $ParamsMap{$ParamName};
|
|
|
663 if (length $ParamValue) {
|
|
|
664 $AppletTags .= qq(<param name="$ParamName" value="$ParamValue">\n);
|
|
|
665 }
|
|
|
666 }
|
|
|
667
|
|
|
668 #Finish it up...
|
|
|
669 $AppletTags .= qq(</applet>\n);
|
|
|
670
|
|
|
671 return $AppletTags;
|
|
|
672 }
|
|
|
673
|
|
|
674 # Setup MarvinView applet...
|
|
|
675 sub SetupStrViewerMarvinViewApplet {
|
|
|
676 my($MolString, $CodeBase, $ParamsMapRef, %ParamsMap, $AppletTags, $JavaScriptTags, $ReturnTags, $Name, $Code, $Archive, $Width, $Height, $ParamName, $NavMode, $ParamValue, $JSFileName, $UseJavaScript, $MarvinJVM);
|
|
|
677
|
|
|
678 $AppletTags = ""; $JavaScriptTags = ""; $ReturnTags = "";
|
|
|
679 $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
680 $Name = "MView"; $Code = "MView"; $Archive = "marvin.jar"; $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
681 $NavMode = "zoom";
|
|
|
682 $UseJavaScript = 0; $JSFileName = ""; $MarvinJVM = "";
|
|
|
683
|
|
|
684 if (@_ == 3) {
|
|
|
685 ($MolString, $CodeBase, $ParamsMapRef) = @_;
|
|
|
686 }
|
|
|
687 else {
|
|
|
688 ($MolString, $CodeBase) = @_;
|
|
|
689 }
|
|
|
690
|
|
|
691 if ($ParamsMapRef) {
|
|
|
692 %ParamsMap = %$ParamsMapRef;
|
|
|
693 if (exists $ParamsMap{usejavascript} ) { $JSFileName = $ParamsMap{usejavascript}; $UseJavaScript = 1; $ParamsMap{usejavascript} = ""; }
|
|
|
694 if (exists $ParamsMap{marvin_jvm} ) { $MarvinJVM = $ParamsMap{marvin_jvm}; $ParamsMap{marvin_jvm} = ""; }
|
|
|
695 if (exists $ParamsMap{name} ) { $Name = $ParamsMap{name}; $ParamsMap{name} = ""; }
|
|
|
696 if (exists $ParamsMap{code} ) { $Code = $ParamsMap{code}; $ParamsMap{code} = ""; }
|
|
|
697 if (exists $ParamsMap{archive} ) { $Archive = $ParamsMap{archive}; $ParamsMap{archive} = ""; }
|
|
|
698 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
699 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
700 if (exists $ParamsMap{bgcolor}) {
|
|
|
701 $ParamsMap{background} = "$ParamsMap{bgcolor}";
|
|
|
702 $ParamsMap{molbg} = "$ParamsMap{bgcolor}";
|
|
|
703 $ParamsMap{bgcolor} = "";
|
|
|
704 }
|
|
|
705 if (exists $ParamsMap{navmode}) {
|
|
|
706 $NavMode = $ParamsMap{navmode};
|
|
|
707 $ParamsMap{navmode} = "";
|
|
|
708 }
|
|
|
709 }
|
|
|
710 $MolString =~ s/(\r\n)|(\r)|(\n)/\\/g;
|
|
|
711 if ($UseJavaScript) {
|
|
|
712 $JavaScriptTags = qq(\n<script>\n);
|
|
|
713 $JavaScriptTags .= qq(var marvin_name = "$Name";\n);
|
|
|
714 $JavaScriptTags .= qq(var marvin_jvm = "$MarvinJVM";\n);
|
|
|
715
|
|
|
716 $JavaScriptTags .= qq(mview_begin("$CodeBase", $Width, $Height);\n);
|
|
|
717
|
|
|
718 $JavaScriptTags .= qq(var $Name = \n);
|
|
|
719 my(@MolLines) = split /\\/, $MolString;
|
|
|
720 my($LineIndex);
|
|
|
721 $JavaScriptTags .= qq("$MolLines[0]\\n");
|
|
|
722 for $LineIndex (1 .. $#MolLines) {
|
|
|
723 $JavaScriptTags .= qq( + \n"$MolLines[$LineIndex]\\n");
|
|
|
724 }
|
|
|
725 $JavaScriptTags .= qq(;\n);
|
|
|
726 $JavaScriptTags .= qq(mview_param("mol", $Name);\n);
|
|
|
727
|
|
|
728 $JavaScriptTags .= qq(mview_param("navmode", "$NavMode");\n);
|
|
|
729
|
|
|
730 for $ParamName (sort keys %ParamsMap) {
|
|
|
731 $ParamValue = $ParamsMap{$ParamName};
|
|
|
732 if (length $ParamValue) {
|
|
|
733 $JavaScriptTags .= qq(mview_param("$ParamName", "$ParamValue");\n);
|
|
|
734 }
|
|
|
735 }
|
|
|
736 $JavaScriptTags .= qq(mview_end();\n);
|
|
|
737 $JavaScriptTags .= qq(</script>\n);
|
|
|
738 $ReturnTags = $JavaScriptTags;
|
|
|
739 }
|
|
|
740 else {
|
|
|
741 # Setup applet header...
|
|
|
742 $AppletTags = qq(\n<applet name="$Name" id="$Name" code="$Code" archive="$Archive" codebase="$CodeBase" width="$Width" height="$Height">\n);
|
|
|
743
|
|
|
744 # Setup molecule data...
|
|
|
745 $AppletTags .= qq(<param name="mol" value="$MolString">\n);
|
|
|
746
|
|
|
747 $AppletTags .= qq(<param name="navmode" value="$NavMode">\n);
|
|
|
748
|
|
|
749 #Setup other parameters...
|
|
|
750 for $ParamName (sort keys %ParamsMap) {
|
|
|
751 $ParamValue = $ParamsMap{$ParamName};
|
|
|
752 if (length $ParamValue) {
|
|
|
753 $AppletTags .= qq(<param name="$ParamName" value="$ParamValue">\n);
|
|
|
754 }
|
|
|
755 }
|
|
|
756 $AppletTags .= qq(</applet>\n);
|
|
|
757 $ReturnTags = $AppletTags;
|
|
|
758 }
|
|
|
759 return $ReturnTags;
|
|
|
760 }
|
|
|
761
|
|
|
762 # Setup MDL chime plug-in...
|
|
|
763 sub SetupStrViewerChimePlugIn {
|
|
|
764 my($MolFile, $ParamsMapRef, %ParamsMap, $Width, $Height, $ParamName, $ParamValue, $PlugInTags);
|
|
|
765 my($Display2D);
|
|
|
766
|
|
|
767 $PlugInTags = ""; $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
768 $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
769 $Display2D = "true";
|
|
|
770
|
|
|
771 if (@_ == 2) {
|
|
|
772 ($MolFile, $ParamsMapRef) = @_;
|
|
|
773 }
|
|
|
774 else {
|
|
|
775 ($MolFile) = @_;
|
|
|
776 }
|
|
|
777
|
|
|
778 if ($ParamsMapRef) {
|
|
|
779 %ParamsMap = %$ParamsMapRef;
|
|
|
780 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
781 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
782 if (exists $ParamsMap{display2d} ) { $Display2D = $ParamsMap{display2d}; $ParamsMap{display2d} = ""; }
|
|
|
783 }
|
|
|
784 # Start plug-in tag...
|
|
|
785 $PlugInTags = qq(<embed src="$MolFile" width="$Width" height="$Height" display2d="$Display2D");
|
|
|
786
|
|
|
787 #Setup other parameters...
|
|
|
788 for $ParamName (sort keys %ParamsMap) {
|
|
|
789 $ParamValue = $ParamsMap{$ParamName};
|
|
|
790 if (length $ParamValue) {
|
|
|
791 $PlugInTags .= qq( $ParamName="$ParamValue");
|
|
|
792 }
|
|
|
793 }
|
|
|
794
|
|
|
795 # Finish it off...
|
|
|
796 $PlugInTags .= qq( >);
|
|
|
797
|
|
|
798 return $PlugInTags;
|
|
|
799 }
|
|
|
800
|
|
|
801 # Setup Accelrys ViewerActiveX controls...
|
|
|
802 sub SetupStrViewerAccelrysActiveX {
|
|
|
803 my($MolFile, $ParamsMapRef, %ParamsMap, $ActiveXTags, $Name, $Width, $Height, $ParamName, $ParamValue);
|
|
|
804 my($ClassId, $Convert2DTo3D, $Style, $Mouse);
|
|
|
805
|
|
|
806 $ActiveXTags = ""; $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
807 $Name = "ViewerActiveX"; $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
808 $ClassId = "clsid:90690CB6-BC07-11D4-AEF7-0050DA948176";
|
|
|
809 $Convert2DTo3D = "0";
|
|
|
810 $Mouse = 4;
|
|
|
811
|
|
|
812 if (@_ == 2) {
|
|
|
813 ($MolFile, $ParamsMapRef) = @_;
|
|
|
814 }
|
|
|
815 else {
|
|
|
816 ($MolFile) = @_;
|
|
|
817 }
|
|
|
818
|
|
|
819 if ($ParamsMapRef) {
|
|
|
820 %ParamsMap = %$ParamsMapRef;
|
|
|
821 if (exists $ParamsMap{classid} ) { $ClassId = $ParamsMap{classid}; $ParamsMap{classid} = ""; }
|
|
|
822 if (exists $ParamsMap{name} ) { $Name = $ParamsMap{name}; $ParamsMap{name} = ""; }
|
|
|
823 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
824 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
825 if (exists $ParamsMap{Convert2Dto3D} ) { $Convert2DTo3D = $ParamsMap{Convert2Dto3D}; $ParamsMap{Convert2Dto3D} = ""; }
|
|
|
826 if (exists $ParamsMap{Mouse} ) { $Mouse = $ParamsMap{Mouse}; $ParamsMap{Mouse} = ""; }
|
|
|
827 if (exists $ParamsMap{bgcolor} ) {
|
|
|
828 my($BgColor) = $ParamsMap{bgcolor};
|
|
|
829 $ParamsMap{bgcolor} = "";
|
|
|
830 # Get OLE color value: &aabbggrr&
|
|
|
831 # Set it to white for now...
|
|
|
832 $BgColor = "16777215";
|
|
|
833 $ParamsMap{BackColor} = "$BgColor";
|
|
|
834 }
|
|
|
835 }
|
|
|
836 $Style = qq(style="height: ) . $Height . qq(px; width: ) . $Width . qq(px");
|
|
|
837
|
|
|
838 # Setup object header...
|
|
|
839 $ActiveXTags = qq(\n<object id="$Name" classid="$ClassId" $Style>\n);
|
|
|
840
|
|
|
841 # Setup molecule data...
|
|
|
842 $ActiveXTags .= qq(<param name="Source" value="$MolFile">\n<param name="Mouse" value="$Mouse">\n<param name="Convert2Dto3D" value="$Convert2DTo3D">\n);
|
|
|
843
|
|
|
844 #Setup other parameters...
|
|
|
845 for $ParamName (sort keys %ParamsMap) {
|
|
|
846 $ParamValue = $ParamsMap{$ParamName};
|
|
|
847 if (length $ParamValue) {
|
|
|
848 $ActiveXTags .= qq(<param name="$ParamName" value="$ParamValue">\n);
|
|
|
849 }
|
|
|
850 }
|
|
|
851
|
|
|
852 # Finish it off...
|
|
|
853 $ActiveXTags .= qq(</object>\n);
|
|
|
854
|
|
|
855 return $ActiveXTags;
|
|
|
856 }
|
|
|
857
|
|
|
858 # Setup Chem3D ActiveX 8.0 control...
|
|
|
859 sub SetupStrViewerChem3DActiveX {
|
|
|
860 my($MolFile, $ParamsMapRef, %ParamsMap, $ActiveXTags, $JavaScriptTags, $ReturnTags, $Name, $Width, $Height, $ParamName, $ParamValue);
|
|
|
861 my($ClassId, $Style, $DisplayType, $RotationBars, $MovieController, $JSFileName, $UseJavaScript);
|
|
|
862
|
|
|
863 $ActiveXTags = ""; $JavaScriptTags = ""; $ReturnTags = "";
|
|
|
864 $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
865 $Name = "Chem3D"; $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
866 $ClassId = "clsid:B7A6B8E4-3E8B-4D18-8F8F-B4057EFC784B";
|
|
|
867 $DisplayType = "Ball&Stick";
|
|
|
868 $RotationBars = "false";
|
|
|
869 $MovieController = "false";
|
|
|
870
|
|
|
871 if (@_ == 2) {
|
|
|
872 ($MolFile, $ParamsMapRef) = @_;
|
|
|
873 }
|
|
|
874 else {
|
|
|
875 ($MolFile) = @_;
|
|
|
876 }
|
|
|
877
|
|
|
878 if ($ParamsMapRef) {
|
|
|
879 %ParamsMap = %$ParamsMapRef;
|
|
|
880 if (exists $ParamsMap{usejavascript} ) { $JSFileName = $ParamsMap{usejavascript}; $UseJavaScript = 1; $ParamsMap{usejavascript} = ""; }
|
|
|
881 if (exists $ParamsMap{classid} ) { $ClassId = $ParamsMap{classid}; $ParamsMap{classid} = ""; }
|
|
|
882 if (exists $ParamsMap{name} ) { $Name = $ParamsMap{name}; $ParamsMap{name} = ""; }
|
|
|
883 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
884 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
885 if (exists $ParamsMap{displaytype} ) { $DisplayType = $ParamsMap{displaytype}; $ParamsMap{displaytype} = ""; }
|
|
|
886 if (exists $ParamsMap{rotationbars} ) { $RotationBars = $ParamsMap{rotationbars}; $ParamsMap{rotationbars} = ""; }
|
|
|
887 if (exists $ParamsMap{moviecontroller} ) { $MovieController = $ParamsMap{moviecontroller}; $ParamsMap{moviecontroller} = ""; }
|
|
|
888 }
|
|
|
889 $Style = qq(style="height: ) . $Height . qq(px; width: ) . $Width . qq(px");
|
|
|
890
|
|
|
891 if ($UseJavaScript) {
|
|
|
892 #Setup parameters...
|
|
|
893 my($Params) = "";
|
|
|
894 for $ParamName (sort keys %ParamsMap) {
|
|
|
895 $ParamValue = $ParamsMap{$ParamName};
|
|
|
896 if (length $ParamValue) {
|
|
|
897 $Params .= qq( $ParamName='$ParamValue');
|
|
|
898 }
|
|
|
899 }
|
|
|
900 $JavaScriptTags = qq(\n<script>\n);
|
|
|
901 $JavaScriptTags .= qq(c3d_insert3dStr("name='$Name' src='$MolFile' width='$Width' height='$Height' displaytype='$DisplayType' rotation_bars_visible='$RotationBars' movie_controller_visible='$MovieController' $Params");\n);
|
|
|
902 $JavaScriptTags .= qq(</script>\n);
|
|
|
903 $ReturnTags = $JavaScriptTags;
|
|
|
904 }
|
|
|
905 else {
|
|
|
906 # Setup object header...
|
|
|
907 $ActiveXTags = qq(\n<object id="$Name" classid="$ClassId" $Style>\n);
|
|
|
908
|
|
|
909 # Setup molecule data...
|
|
|
910 $ActiveXTags .= qq(<param name="src" value="$MolFile">\n<param name="displaytype" value="$DisplayType">\n<param name="rotationbars" value="$RotationBars">\n<param name="moviecontroller" value="$MovieController">\n);
|
|
|
911
|
|
|
912 #Setup other parameters...
|
|
|
913 for $ParamName (sort keys %ParamsMap) {
|
|
|
914 $ParamValue = $ParamsMap{$ParamName};
|
|
|
915 if (length $ParamValue) {
|
|
|
916 $ActiveXTags .= qq(<param name="$ParamName" value="$ParamValue">\n);
|
|
|
917 }
|
|
|
918 }
|
|
|
919 $ActiveXTags .= qq(</object>\n);
|
|
|
920 $ReturnTags = $ActiveXTags;
|
|
|
921 }
|
|
|
922 return $ReturnTags;
|
|
|
923 }
|
|
|
924
|
|
|
925 # Setup ChemDraw ActiveX 8.0 control...
|
|
|
926 # Problems: "bgcolor" parameter doesn't work.
|
|
|
927 sub SetupStrViewerChemDrawActiveX {
|
|
|
928 my($MolFile, $ParamsMapRef, %ParamsMap, $ActiveXTags, $JavaScriptTags, $ReturnTags, $Name, $Width, $Height, $ParamName, $ParamValue);
|
|
|
929 my($ClassId, $Style, $ViewOnly, $ShrinkToFit, $ShowToolsWhenVisible, $JSFileName, $UseJavaScript);
|
|
|
930
|
|
|
931 $ActiveXTags = ""; $JavaScriptTags = ""; $ReturnTags = "";
|
|
|
932 $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
933 $Name = "ChemDraw"; $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
934 $ClassId = "clsid:51A649C4-3E3D-4557-9BD8-B14C0AD44B0C";
|
|
|
935 $ViewOnly = "1"; $JavaScriptTags = "";
|
|
|
936 $ShrinkToFit = "1";
|
|
|
937 $ShowToolsWhenVisible = "1";
|
|
|
938
|
|
|
939 if (@_ == 2) {
|
|
|
940 ($MolFile, $ParamsMapRef) = @_;
|
|
|
941 }
|
|
|
942 else {
|
|
|
943 ($MolFile) = @_;
|
|
|
944 }
|
|
|
945
|
|
|
946 if ($ParamsMapRef) {
|
|
|
947 %ParamsMap = %$ParamsMapRef;
|
|
|
948 if (exists $ParamsMap{usejavascript} ) { $JSFileName = $ParamsMap{usejavascript}; $UseJavaScript = 1; $ParamsMap{usejavascript} = ""; }
|
|
|
949 if (exists $ParamsMap{classid} ) { $ClassId = $ParamsMap{classid}; $ParamsMap{classid} = ""; }
|
|
|
950 if (exists $ParamsMap{name} ) { $Name = $ParamsMap{name}; $ParamsMap{name} = ""; }
|
|
|
951 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
952 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
953 if (exists $ParamsMap{ViewOnly} ) { $ViewOnly = $ParamsMap{ViewOnly}; $ParamsMap{ViewOnly} = ""; }
|
|
|
954 if (exists $ParamsMap{ShrinkToFit} ) { $ShrinkToFit = $ParamsMap{ShrinkToFit}; $ParamsMap{ShrinkToFit} = ""; }
|
|
|
955 if (exists $ParamsMap{ShowToolsWhenVisible} ) { $ShowToolsWhenVisible = $ParamsMap{ShowToolsWhenVisible}; $ParamsMap{ShowToolsWhenVisible} = ""; }
|
|
|
956 }
|
|
|
957 if ($UseJavaScript) {
|
|
|
958 #Setup parameter...
|
|
|
959 my($Params) = "";
|
|
|
960 for $ParamName (sort keys %ParamsMap) {
|
|
|
961 $ParamValue = $ParamsMap{$ParamName};
|
|
|
962 if (length $ParamValue) {
|
|
|
963 $Params .= qq( $ParamName='$ParamValue');
|
|
|
964 }
|
|
|
965 }
|
|
|
966 $JavaScriptTags = qq(\n<script>\n);
|
|
|
967 $JavaScriptTags .= qq(cd_insertObjectStr("name='$Name' src='$MolFile' width='$Width' height='$Height' shrinktofit='$ShrinkToFit' viewonly='$ViewOnly' $Params");\n);
|
|
|
968 $JavaScriptTags .= qq(</script>\n);
|
|
|
969 $ReturnTags = $JavaScriptTags;
|
|
|
970 }
|
|
|
971 else {
|
|
|
972 $Style = qq(style="height: ) . $Height . qq(px; width: ) . $Width . qq(px");
|
|
|
973
|
|
|
974 # Setup object header...
|
|
|
975 $ActiveXTags = qq(\n<object id="$Name" classid="$ClassId" $Style>\n);
|
|
|
976
|
|
|
977 # Setup molecule data...
|
|
|
978 $ActiveXTags .= qq(<param name="SourceURL" value="$MolFile">\n<param name="ShrinkToFit" value="$ShrinkToFit">\n<param name="ViewOnly" value="$ViewOnly">\n<param name="ShowToolsWhenVisible" value="$ShowToolsWhenVisible">\n);
|
|
|
979
|
|
|
980 #Setup other parameters...
|
|
|
981 for $ParamName (sort keys %ParamsMap) {
|
|
|
982 $ParamValue = $ParamsMap{$ParamName};
|
|
|
983 if (length $ParamValue) {
|
|
|
984 $ActiveXTags .= qq(<param name="$ParamName" value="$ParamValue">\n);
|
|
|
985 }
|
|
|
986 }
|
|
|
987 $ActiveXTags .= qq(</object>\n);
|
|
|
988 $ReturnTags = $ActiveXTags;
|
|
|
989 }
|
|
|
990 return $ReturnTags;
|
|
|
991 }
|
|
|
992
|
|
|
993 # Setup ChemDraw plug-in used for Netscape browsers...
|
|
|
994 # Problems: "bgcolor" parameter doesn't work.
|
|
|
995 sub SetupStrViewerChemDrawPlugIn {
|
|
|
996 my($MolFile, $Name, $ParamsMapRef, %ParamsMap, $Width, $Height, $ParamName, $ParamValue, $PlugInTags, $JavaScriptTags, $ReturnTags,);
|
|
|
997 my($MimeType, $ViewOnly, $ShrinkToFit, $ShowToolsWhenVisible, $JSFileName, $UseJavaScript);
|
|
|
998
|
|
|
999 $Name = "ChemDraw"; $PlugInTags = ""; $ParamsMapRef = ""; %ParamsMap = ();
|
|
|
1000 $Width = $StrViewerWidth; $Height = $StrViewerHeight;
|
|
|
1001 $MimeType = "chemical/x-mdl-molfile";
|
|
|
1002 $ViewOnly = "1";
|
|
|
1003 $ShrinkToFit = "1";
|
|
|
1004 $ShowToolsWhenVisible = "1"; $JavaScriptTags = "";
|
|
|
1005
|
|
|
1006 if (@_ == 2) {
|
|
|
1007 ($MolFile, $ParamsMapRef) = @_;
|
|
|
1008 }
|
|
|
1009 else {
|
|
|
1010 ($MolFile) = @_;
|
|
|
1011 }
|
|
|
1012
|
|
|
1013 if ($ParamsMapRef) {
|
|
|
1014 %ParamsMap = %$ParamsMapRef;
|
|
|
1015 if (exists $ParamsMap{usejavascript} ) { $JSFileName = $ParamsMap{usejavascript}; $UseJavaScript = 1; $ParamsMap{usejavascript} = ""; }
|
|
|
1016 if (exists $ParamsMap{height} ) { $Height = $ParamsMap{height}; $ParamsMap{height} = ""; }
|
|
|
1017 if (exists $ParamsMap{width} ) { $Width = $ParamsMap{width}; $ParamsMap{width} = ""; }
|
|
|
1018 if (exists $ParamsMap{type} ) { $MimeType = $ParamsMap{type}; $ParamsMap{type} = ""; }
|
|
|
1019 if (exists $ParamsMap{viewonly} ) { $ViewOnly = $ParamsMap{viewonly}; $ParamsMap{viewonly} = ""; }
|
|
|
1020 if (exists $ParamsMap{shrinktofit} ) { $ShrinkToFit = $ParamsMap{shrinktofit}; $ParamsMap{shrinktofit} = ""; }
|
|
|
1021 if (exists $ParamsMap{showtoolswhenvisible} ) { $ShowToolsWhenVisible = $ParamsMap{showtoolswhenvisible}; $ParamsMap{showtoolswhenvisible} = ""; }
|
|
|
1022 }
|
|
|
1023 if ($UseJavaScript) {
|
|
|
1024 $JavaScriptTags = qq(\n<script>\n);
|
|
|
1025 $JavaScriptTags .= qq(cd_insertObjectStr("name='$Name' src='$MolFile' type='$MimeType' width='$Width' height='$Height' shrinktofit='$ShrinkToFit' viewonly='$ViewOnly'");\n);
|
|
|
1026 $JavaScriptTags .= qq(</script>\n);
|
|
|
1027 $ReturnTags = $JavaScriptTags;
|
|
|
1028 }
|
|
|
1029 else {
|
|
|
1030 # Start plug-in tag...
|
|
|
1031 $PlugInTags = qq(<embed src="$MolFile" width="$Width" height="$Height" type="$MimeType" viewonly="$ViewOnly" shrinktofit="$ShrinkToFit" showtoolswhenvisible=''$ShowToolsWhenVisible");
|
|
|
1032
|
|
|
1033 #Setup other parameters...
|
|
|
1034 for $ParamName (sort keys %ParamsMap) {
|
|
|
1035 $ParamValue = $ParamsMap{$ParamName};
|
|
|
1036 if (length $ParamValue) {
|
|
|
1037 $PlugInTags .= qq(" $ParamName"="$ParamValue");
|
|
|
1038 }
|
|
|
1039 }
|
|
|
1040 # Finish it off...
|
|
|
1041 $PlugInTags .= qq( >);
|
|
|
1042 $ReturnTags = $PlugInTags;
|
|
|
1043 }
|
|
|
1044
|
|
|
1045 return $ReturnTags;
|
|
|
1046 }
|
|
|
1047
|
|
|
1048
|
|
|
1049 1;
|
|
|
1050
|
|
|
1051 __END__
|
|
|
1052
|
|
|
1053 =head1 NAME
|
|
|
1054
|
|
|
1055 HTMLUtil
|
|
|
1056
|
|
|
1057 =head1 SYNOPSIS
|
|
|
1058
|
|
|
1059 use HTMLUtil;
|
|
|
1060
|
|
|
1061 use HTMLUtil qw(:all);
|
|
|
1062
|
|
|
1063 =head1 DESCRIPTION
|
|
|
1064
|
|
|
1065 B<HTMLUtil> module provides the following functions:
|
|
|
1066
|
|
|
1067 InsertHTMLTags, SetupHTMLAlignmentBegin, SetupHTMLAlignmentEnd,
|
|
|
1068 SetupHTMLButtonRef, SetupHTMLDivBegin, SetupHTMLDivEnd, SetupHTMLEmptyLines,
|
|
|
1069 SetupHTMLHRef, SetupHTMLPageEnd, SetupHTMLPageHeader, SetupHTMLPageTitle,
|
|
|
1070 SetupHTMLStyleSheetTags, SetupHTMLTableColumnEnd, SetupHTMLTableColumnHeader,
|
|
|
1071 SetupHTMLTableEnd, SetupHTMLTableHeader, SetupHTMLTableRowDataValue,
|
|
|
1072 SetupHTMLTableRowEnd, SetupHTMLTableRowHeader, SetupHTMLTableRowHeaderValue,
|
|
|
1073 SetupJavaScriptCmds, SetupStrViewerAccelrysActiveX, SetupStrViewerChem3DActiveX,
|
|
|
1074 SetupStrViewerChemDrawActiveX, SetupStrViewerChemDrawPlugIn,
|
|
|
1075 SetupStrViewerChimePlugIn, SetupStrViewerJMEApplet, SetupStrViewerJSInitCmd,
|
|
|
1076 SetupStrViewerJmolApplet, SetupStrViewerMarvinViewApplet
|
|
|
1077
|
|
|
1078 =head2 FUNCTIONS
|
|
|
1079
|
|
|
1080 =over 4
|
|
|
1081
|
|
|
1082 =item B<InsertHTMLTags>
|
|
|
1083
|
|
|
1084 $NewTag = InsertHTMLTags($Tag, @TagsNameValue);
|
|
|
1085
|
|
|
1086 Inserts tag name and value pair from I<TagsNameValue> into a exisiting I<Tag> as I<TagName = "TagValue">
|
|
|
1087 and returns B<NewTag> string.
|
|
|
1088
|
|
|
1089 =item B<SetupHTMLAlignmentBegin>
|
|
|
1090
|
|
|
1091 $AlignmentTag = SetupHTMLAlignmentBegin([$Alignment]);
|
|
|
1092
|
|
|
1093 Returns an alignment begin tag string. Possible I<Alignment> values: I<left, center, or right>.
|
|
|
1094 Default: I<left>.
|
|
|
1095
|
|
|
1096 =item B<SetupHTMLAlignmentEnd>
|
|
|
1097
|
|
|
1098 $AlignmentTag = SetupHTMLAlignmentBegin([$Alignment]);
|
|
|
1099
|
|
|
1100 Returns an alignment end tag string.
|
|
|
1101
|
|
|
1102 =item B<SetupHTMLButtonRef>
|
|
|
1103
|
|
|
1104 $ButtonTag = SetupHTMLButtonRef($ButtonLabel, $FileName);
|
|
|
1105
|
|
|
1106 Returns a button tag string for associating B<onClick> button event of a button with label I<ButtonLabel>
|
|
|
1107 to open a file I<FileName>.
|
|
|
1108
|
|
|
1109 =item B<SetupHTMLDivBegin>
|
|
|
1110
|
|
|
1111 $DivTag = SetupHTMLDivBegin($ID);
|
|
|
1112
|
|
|
1113 Returns a div begin tag string for div I<ID>.
|
|
|
1114
|
|
|
1115 =item B<SetupHTMLDivEnd>
|
|
|
1116
|
|
|
1117 $DivTag = SetupHTMLDivEnd();
|
|
|
1118
|
|
|
1119 Returns a div end tag string.
|
|
|
1120
|
|
|
1121 =item B<SetupHTMLTableEnd>
|
|
|
1122
|
|
|
1123 $TableEndTag = SetupHTMLTableEnd();
|
|
|
1124
|
|
|
1125 Returns a table end tag string.
|
|
|
1126
|
|
|
1127 =item B<SetupHTMLEmptyLines>
|
|
|
1128
|
|
|
1129 $EmptyLineTags = SetupHTMLEmptyLines([$LineCount]);
|
|
|
1130
|
|
|
1131 Returns an empty lines tag string for empty I<LineCount>. Default line count: I<1>.
|
|
|
1132
|
|
|
1133 =item B<SetupHTMLPageHeader>
|
|
|
1134
|
|
|
1135 $PageHeaderTag = SetupHTMLPageHeader($HeaderTitle, [$Stylesheet,
|
|
|
1136 $JavaScript]);
|
|
|
1137
|
|
|
1138 Returns a page header tag string using I<HeaderTitle> and using optionally specifed
|
|
|
1139 values for I<Stylesheet> and I<JavaScript>.
|
|
|
1140
|
|
|
1141 =item B<SetupHTMLHRef>
|
|
|
1142
|
|
|
1143 $HRef = SetupHTMLHRef($Label, $URL, [$Title]);
|
|
|
1144
|
|
|
1145 Returns a HRef tag string for setting up a URL with I<Label> and I<URL> with optional I<Title>.
|
|
|
1146
|
|
|
1147 =item B<SetupHTMLPageEnd>
|
|
|
1148
|
|
|
1149 $PageEndTag = SetupHTMLPageEnd([$FooterMsg]);
|
|
|
1150
|
|
|
1151 Returns a page end tag string conating optional I<FooterMsg>.
|
|
|
1152
|
|
|
1153 =item B<SetupHTMLPageTitle>
|
|
|
1154
|
|
|
1155 $PageTitleTag = SetupHTMLPageTitle($Title, [$Alignment]);
|
|
|
1156
|
|
|
1157 Returns a page title tag string with optional alignment. Valid alignment value: I<left, center, right>
|
|
|
1158 Default alignment: I<center>.
|
|
|
1159
|
|
|
1160 =item B<SetupHTMLStyleSheetTags>
|
|
|
1161
|
|
|
1162 $StyleSheetTags = SetupHTMLStyleSheetTags();
|
|
|
1163
|
|
|
1164 Returns a default style sheet tag string to be used for HTML files generated by MayaChemTools.
|
|
|
1165
|
|
|
1166 =item B<SetupHTMLTableHeader>
|
|
|
1167
|
|
|
1168 $TableHeaderTags = SetupHTMLTableHeader([$BorderWidth,
|
|
|
1169 $CellPadding, $CellSpacing, $Width, $Height]);
|
|
|
1170
|
|
|
1171 Returns a table header tag string containing specified values for I<BorderWidth, CellPadding, CellSpacing,
|
|
|
1172 Width, and Height>. Default values: I<BorderWidth = 1; CellPadding = 2; CellSpacing = 0; Width = NotUsed;
|
|
|
1173 Height = NotUsed>.
|
|
|
1174
|
|
|
1175 =item <SetupHTMLTableEnd>
|
|
|
1176
|
|
|
1177 $TableEndTag = SetupHTMLTableEnd();
|
|
|
1178
|
|
|
1179 Returns a table end tag string.
|
|
|
1180
|
|
|
1181 =item B<SetupHTMLTableColumnHeader>
|
|
|
1182
|
|
|
1183 $ColumnHeaderTag = SetupHTMLTableColumnHeader([$BgColor, $Width]);
|
|
|
1184
|
|
|
1185 Returns a table column header tag string containing specified values for I<BgColor, Width>. Default
|
|
|
1186 values: I<BgColor = NotUsed; Width = NotUsed>.
|
|
|
1187
|
|
|
1188 =item B<SetupHTMLTableColumnEnd>
|
|
|
1189
|
|
|
1190 $ColumnEndTag = SetupHTMLTableColumnEnd();
|
|
|
1191
|
|
|
1192 Returns a table column end tag string.
|
|
|
1193
|
|
|
1194 =item B<SetupHTMLTableRowHeader>
|
|
|
1195
|
|
|
1196 $RowHeaderTag = SetupHTMLTableRowHeader([$HAlignment, $BgColor,
|
|
|
1197 $VAlignment]);
|
|
|
1198
|
|
|
1199 Returns a table row header tag string containing specified values for I<HAlignment, BgColor, and VAlignment>.
|
|
|
1200 Default values: I<HAlignment = center; $BgColor = NotUsed; $VAlignment = top>.
|
|
|
1201
|
|
|
1202 =item B<SetupHTMLTableRowEnd>
|
|
|
1203
|
|
|
1204 $RowEndTag = SetupHTMLTableRowEnd();
|
|
|
1205
|
|
|
1206 Returns a table row end tag string.
|
|
|
1207
|
|
|
1208 =item B<SetupHTMLTableRowHeaderValue>
|
|
|
1209
|
|
|
1210 $HeaderValueTag = SetupHTMLTableRowHeaderValue([$Value]);
|
|
|
1211
|
|
|
1212 Returns a table header row tag string using specifed I<Value>. Default value: I<EmptySpace>.
|
|
|
1213
|
|
|
1214 =item B<SetupHTMLTableRowDataValue>
|
|
|
1215
|
|
|
1216 $RowValueTag = SetupHTMLTableRowDataValue([$Value, $BgColor,
|
|
|
1217 $FontColor, $FontBold]);
|
|
|
1218
|
|
|
1219 Returns a table row column value tag string using specified values for I<Value, BgColor,
|
|
|
1220 FontColor, and FontBold>. Default values: I<Value = EmptySpace; BgColor = NotUsed;
|
|
|
1221 FontColor = NotUsed; $FontBold = NotUsed>.
|
|
|
1222
|
|
|
1223 =item B<SetupJavaScriptCmds>
|
|
|
1224
|
|
|
1225 $JSTag = SetupJavaScriptCmds(@JSCmdList);
|
|
|
1226
|
|
|
1227 Returns a Java script tag string using java script commands specified in I<JSCmdList>.
|
|
|
1228
|
|
|
1229 =item B<SetupStrViewerJSInitCmd>
|
|
|
1230
|
|
|
1231 $JSTag = SetupStrViewerJSInitCmd($StrViewerType, $CodeBase);
|
|
|
1232
|
|
|
1233 Returns a Java script command tag string for intializing structure viewers with specified I<CodeBase>
|
|
|
1234 location for viewers to be invoked as Java Applets. Supported values for I<StrViewerType>: I<Jmol,
|
|
|
1235 ChemDrawPlugIn, ChemDrawActiveX, Chem3DActiveX>.
|
|
|
1236
|
|
|
1237 =item B<SetupStrViewerJMEApplet>
|
|
|
1238
|
|
|
1239 $JMEAppletTag = SetupStrViewerJMEApplet($MolString, $CodeBase,
|
|
|
1240 [{param => "value"}]);
|
|
|
1241
|
|
|
1242 Returns a JME tag string for displaying molecule using I<MolString> along with valid optional applet
|
|
|
1243 parameters specified as name and value pairs. Defaul JME parameter values: I<name = JME; id = JME;
|
|
|
1244 width = 250; height = 170>.
|
|
|
1245
|
|
|
1246 =item B<SetupStrViewerJmolApplet>
|
|
|
1247
|
|
|
1248 $JmolAppletTag = SetupStrViewerJmolApplet($MolString, $CodeBase,
|
|
|
1249 [{param => "value"}]);
|
|
|
1250
|
|
|
1251 Returns a JMol tag string for displaying molecule using I<MolString> along with valid optional applet
|
|
|
1252 parameters specified as name and value pairs. Defaul JMol parameter values: I<name = Jmol; id = Jmol;
|
|
|
1253 width = 250; height = 170; progressbar = true; progresscolor = 0000ff; bgcolor = 000000; JMolScript =
|
|
|
1254 select *; set frank off; wireframe on; spacefill off>.
|
|
|
1255
|
|
|
1256 =item B<SetupStrViewerMarvinViewApplet>
|
|
|
1257
|
|
|
1258 $MarvinAppletTag = SetupStrViewerMarvinViewApplet($MolString,
|
|
|
1259 $CodeBase, [{param => "value"}]);
|
|
|
1260
|
|
|
1261 Returns a MarvinView tag string for displaying molecule using I<MolString> along with valid optional applet
|
|
|
1262 parameters specified as name and value pairs. Defaul MarvinView parameter values: I<name = MView; id = MView;
|
|
|
1263 width = 250; height = 170; navmode = zoom>.
|
|
|
1264
|
|
|
1265 =item B<SetupStrViewerChimePlugIn>
|
|
|
1266
|
|
|
1267 $ChimePlugInTag = SetupStrViewerChimePlugIn($MolFile,
|
|
|
1268 [{param => "value"}]);
|
|
|
1269
|
|
|
1270 Returns a MDL Chime tag string for displaying molecule using I<MolFile> along with valid optional
|
|
|
1271 parameters specified as name and value pairs. Defaul Chime parameter values: I<width = 250; height = 170;
|
|
|
1272 display2d = true>.
|
|
|
1273
|
|
|
1274 =item B<SetupStrViewerChem3DActiveX>
|
|
|
1275
|
|
|
1276 $ChemDraw3DActiveXTags = SetupStrViewerChemDrawActiveX($MolFile,
|
|
|
1277 [{param => "value"}]);
|
|
|
1278
|
|
|
1279 Returns a CambridgeSoft Chem3D tag string for displaying molecule using I<MolFile> along with valid optional
|
|
|
1280 parameters specified as name and value pairs. Defaul Chime parameter values: I<width = 250; height = 170;
|
|
|
1281 displaytype = BallAndStick; rotationbars = false; moviecontroller = false>.
|
|
|
1282
|
|
|
1283 =item B<SetupStrViewerChemDrawActiveX>
|
|
|
1284
|
|
|
1285 $ChemDrawActiveXTags = SetupStrViewerChem3DActiveX($MolFile,
|
|
|
1286 [{param => "value"}]);
|
|
|
1287
|
|
|
1288 Returns a CambridgeSoft ChemDraw ActiveX tag string for displaying molecule using I<MolFile> along with valid optional
|
|
|
1289 parameters specified as name and value pairs. Defaul ChemDraw ActiveX parameter values: I<width = 250; height = 170;
|
|
|
1290 ViewOnly = 1; ShrinkToFit = 1; ShowToolsWhenVisible = 1>.
|
|
|
1291
|
|
|
1292 =item B<SetupStrViewerChemDrawPlugIn>
|
|
|
1293
|
|
|
1294 $ChemDrawPlugInTag = SetupStrViewerChemDrawPlugIn($MolFile,
|
|
|
1295 [{param => "value"}]);
|
|
|
1296
|
|
|
1297 Returns a CambridgeSoft ChemDraw PlugIn tag string for displaying molecule using I<MolFile> along with valid optional
|
|
|
1298 parameters specified as name and value pairs. Defaul ChemDraw PlugIn parameter values: I<width = 250; height = 170;
|
|
|
1299 ViewOnly = 1; ShrinkToFit = 1; ShowToolsWhenVisible = 1>.
|
|
|
1300
|
|
|
1301 =item B<SetupStrViewerAccelrysActiveX>
|
|
|
1302
|
|
|
1303 $AccelrysActiveXTags = SetupStrViewerAccelrysActiveX($MolFile,
|
|
|
1304 [{param => "value"}]);
|
|
|
1305
|
|
|
1306 Returns a Accelrys ViewerActiveX tag string for displaying molecule using I<MolFile> along with valid optional
|
|
|
1307 parameters specified as name and value pairs. Defaul ViewerActiveX parameter values: I<width = 250; height = 170;
|
|
|
1308 Convert2Dto3D = 0; Mouse = 4>.
|
|
|
1309
|
|
|
1310 =back
|
|
|
1311
|
|
|
1312 =head1 AUTHOR
|
|
|
1313
|
|
|
1314 Manish Sud <msud@san.rr.com>
|
|
|
1315
|
|
|
1316 =head1 COPYRIGHT
|
|
|
1317
|
|
|
1318 Copyright (C) 2015 Manish Sud. All rights reserved.
|
|
|
1319
|
|
|
1320 This file is part of MayaChemTools.
|
|
|
1321
|
|
|
1322 MayaChemTools is free software; you can redistribute it and/or modify it under
|
|
|
1323 the terms of the GNU Lesser General Public License as published by the Free
|
|
|
1324 Software Foundation; either version 3 of the License, or (at your option)
|
|
|
1325 any later version.
|
|
|
1326
|
|
|
1327 =cut
|
