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1 <html>
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2 <head>
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3 <title>MayaChemTools: Documentation</title>
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4 <meta http-equiv="content-type" content="text/html;charset=utf-8">
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5 <link rel="stylesheet" type="text/css" href="../../css/MayaChemTools.css">
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6 </head>
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7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10">
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8 <br/>
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9 <center>
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10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a>
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11 </center>
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12 <br/>
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13 </center>
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14 <div class="Toc">
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15 <p> </p>
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16 <h1>Documentation</h1>
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17 <ul>
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18 <li><a href="./AminoAcids.html">AminoAcids.pm</a></li>
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19 <li><a href="./Atom.html">Atom.pm</a></li>
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20 <li><a href="./AtomicDescriptors.html">AtomicDescriptors::AtomicDescriptors.pm</a></li>
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21 <li><a href="./EStateValuesDescriptors.html">AtomicDescriptors::EStateValuesDescriptors.pm</a></li>
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22 <li><a href="./AtomicInvariantsAtomTypes.html">AtomTypes::AtomicInvariantsAtomTypes.pm</a></li>
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23 <li><a href="./AtomTypes.html">AtomTypes::AtomTypes.pm</a></li>
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24 <li><a href="./DREIDINGAtomTypes.html">AtomTypes::DREIDINGAtomTypes.pm</a></li>
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25 <li><a href="./EStateAtomTypes.html">AtomTypes::EStateAtomTypes.pm</a></li>
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26 <li><a href="./FunctionalClassAtomTypes.html">AtomTypes::FunctionalClassAtomTypes.pm</a></li>
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27 <li><a href="./MMFF94AtomTypes.html">AtomTypes::MMFF94AtomTypes.pm</a></li>
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28 <li><a href="./SLogPAtomTypes.html">AtomTypes::SLogPAtomTypes.pm</a></li>
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29 <li><a href="./SYBYLAtomTypes.html">AtomTypes::SYBYLAtomTypes.pm</a></li>
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30 <li><a href="./TPSAAtomTypes.html">AtomTypes::TPSAAtomTypes.pm</a></li>
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31 <li><a href="./UFFAtomTypes.html">AtomTypes::UFFAtomTypes.pm</a></li>
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32 <li><a href="./BitVector.html">BitVector.pm</a></li>
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33 <li><a href="./Bond.html">Bond.pm</a></li>
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34 <li><a href="./Constants.html">Constants.pm</a></li>
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35 <li><a href="./ConversionsUtil.html">ConversionsUtil.pm</a></li>
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36 <li><a href="./DBUtil.html">DBUtil.pm</a></li>
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37 <li><a href="./FileIO.html">FileIO::FileIO.pm</a></li>
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38 <li><a href="./FingerprintsFPFileIO.html">FileIO::FingerprintsFPFileIO.pm</a></li>
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39 <li><a href="./FingerprintsSDFileIO.html">FileIO::FingerprintsSDFileIO.pm</a></li>
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40 <li><a href="./FingerprintsTextFileIO.html">FileIO::FingerprintsTextFileIO.pm</a></li>
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41 <li><a href="./MDLMolFileIO.html">FileIO::MDLMolFileIO.pm</a></li>
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42 <li><a href="./SDFileIO.html">FileIO::SDFileIO.pm</a></li>
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43 <li><a href="./FileUtil.html">FileUtil.pm</a></li>
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44 <li><a href="./AtomNeighborhoodsFingerprints.html">Fingerprints::AtomNeighborhoodsFingerprints.pm</a></li>
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45 <li><a href="./AtomTypesFingerprints.html">Fingerprints::AtomTypesFingerprints.pm</a></li>
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46 <li><a href="./EStateIndiciesFingerprints.html">Fingerprints::EStateIndiciesFingerprints.pm</a></li>
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47 <li><a href="./ExtendedConnectivityFingerprints.html">Fingerprints::ExtendedConnectivityFingerprints.pm</a></li>
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48 <li><a href="./Fingerprints.html">Fingerprints::Fingerprints.pm</a></li>
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49 <li><a href="./FingerprintsBitVector.html">Fingerprints::FingerprintsBitVector.pm</a></li>
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50 <li><a href="./FingerprintsFileUtil.html">Fingerprints::FingerprintsFileUtil.pm</a></li>
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51 <li><a href="./FingerprintsStringUtil.html">Fingerprints::FingerprintsStringUtil.pm</a></li>
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52 <li><a href="./FingerprintsVector.html">Fingerprints::FingerprintsVector.pm</a></li>
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53 <li><a href="./MACCSKeys.html">Fingerprints::MACCSKeys.pm</a></li>
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54 <li><a href="./PathLengthFingerprints.html">Fingerprints::PathLengthFingerprints.pm</a></li>
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55 <li><a href="./TopologicalAtomPairsFingerprints.html">Fingerprints::TopologicalAtomPairsFingerprints.pm</a></li>
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56 <li><a href="./TopologicalAtomTorsionsFingerprints.html">Fingerprints::TopologicalAtomTorsionsFingerprints.pm</a></li>
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57 <li><a href="./TopologicalAtomTripletsFingerprints.html">Fingerprints::TopologicalAtomTripletsFingerprints.pm</a></li>
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58 <li><a href="./TopologicalPharmacophoreAtomPairsFingerprints.html">Fingerprints::TopologicalPharmacophoreAtomPairsFingerprints.pm</a></li>
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59 <li><a href="./TopologicalPharmacophoreAtomTripletsFingerprints.html">Fingerprints::TopologicalPharmacophoreAtomTripletsFingerprints.pm</a></li>
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60 <li><a href="./CyclesDetection.html">Graph::CyclesDetection.pm</a></li>
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61 <li><a href="./GraphMatrix.html">Graph::GraphMatrix.pm</a></li>
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62 <li><a href="./Path.html">Graph::Path.pm</a></li>
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63 <li><a href="./PathGraph.html">Graph::PathGraph.pm</a></li>
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64 <li><a href="./PathsTraversal.html">Graph::PathsTraversal.pm</a></li>
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65 <li><a href="./Graph.html">Graph.pm</a></li>
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66 <li><a href="./HTMLUtil.html">HTMLUtil.pm</a></li>
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67 <li><a href="./MathUtil.html">MathUtil.pm</a></li>
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68 <li><a href="./Matrix.html">Matrix.pm</a></li>
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69 <li><a href="./AtomsCountDescriptors.html">MolecularDescriptors::AtomsCountDescriptors.pm</a></li>
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70 <li><a href="./Fsp3CarbonsDescriptors.html">MolecularDescriptors::Fsp3CarbonsDescriptors.pm</a></li>
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71 <li><a href="./HydrogenBondsDescriptors.html">MolecularDescriptors::HydrogenBondsDescriptors.pm</a></li>
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72 <li><a href="./MolecularComplexityDescriptors.html">MolecularDescriptors::MolecularComplexityDescriptors.pm</a></li>
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73 <li><a href="./MolecularDescriptors.html">MolecularDescriptors::MolecularDescriptors.pm</a></li>
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74 <li><a href="./MolecularDescriptorsGenerator.html">MolecularDescriptors::MolecularDescriptorsGenerator.pm</a></li>
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75 <li><a href="./MolecularVolumeDescriptors.html">MolecularDescriptors::MolecularVolumeDescriptors.pm</a></li>
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76 <li><a href="./RingsCountDescriptors.html">MolecularDescriptors::RingsCountDescriptors.pm</a></li>
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77 <li><a href="./RotatableBondsDescriptors.html">MolecularDescriptors::RotatableBondsDescriptors.pm</a></li>
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78 <li><a href="./SLogPAndSMRDescriptors.html">MolecularDescriptors::SLogPAndSMRDescriptors.pm</a></li>
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79 <li><a href="./TPSADescriptors.html">MolecularDescriptors::TPSADescriptors.pm</a></li>
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80 <li><a href="./WeightAndMassDescriptors.html">MolecularDescriptors::WeightAndMassDescriptors.pm</a></li>
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81 <li><a href="./MolecularFormula.html">MolecularFormula.pm</a></li>
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82 <li><a href="./Molecule.html">Molecule.pm</a></li>
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83 <li><a href="./MoleculeFileIO.html">MoleculeFileIO.pm</a></li>
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84 <li><a href="./NucleicAcids.html">NucleicAcids.pm</a></li>
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85 <li><a href="./ObjectProperty.html">ObjectProperty.pm</a></li>
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86 <li><a href="./PackageInfo.html">PackageInfo.pm</a></li>
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87 <li><a href="./Lexer.html">Parsers::Lexer.pm</a></li>
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88 <li><a href="./SimpleCalcParser.html">Parsers::SimpleCalcParser.pm</a></li>
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89 <li><a href="./SimpleCalcYYLexer.html">Parsers::SimpleCalcYYLexer.pm</a></li>
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90 <li><a href="./YYLexer.html">Parsers::YYLexer.pm</a></li>
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91 <li><a href="./PDBFileUtil.html">PDBFileUtil.pm</a></li>
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92 <li><a href="./PeriodicTable.html">PeriodicTable.pm</a></li>
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93 <li><a href="./PseudoHeap.html">PseudoHeap.pm</a></li>
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94 <li><a href="./SDFileUtil.html">SDFileUtil.pm</a></li>
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95 <li><a href="./SequenceFileUtil.html">SequenceFileUtil.pm</a></li>
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96 <li><a href="./StatisticsUtil.html">StatisticsUtil.pm</a></li>
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97 <li><a href="./TextUtil.html">TextUtil.pm</a></li>
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98 <li><a href="./TimeUtil.html">TimeUtil.pm</a></li>
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99 <li><a href="./Vector.html">Vector.pm</a></li>
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100 </ul>
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101 </div>
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102 <p> </p><div class="DocNav">
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103 <table width="100%" border=0 cellpadding=0 cellspacing=2>
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104 <tr align="left" valign="top"><td width="33%" align="left"><a href="./AminoAcids.html" title="AminoAcids.html">Next</a> <a href="./Vector.html" title="Vector.html">Last</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>MayaChemTools</strong></td></tr>
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105 </table>
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106 </div>
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107 <br />
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108 <center>
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109 <img src="../../images/h2o2.png">
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110 </center>
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111 </body>
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112 </html>
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