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diff docs/scripts/html/code/SortSDFiles.html @ 0:4816e4a8ae95 draft default tip
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| author | deepakjadmin |
|---|---|
| date | Wed, 20 Jan 2016 09:23:18 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/docs/scripts/html/code/SortSDFiles.html Wed Jan 20 09:23:18 2016 -0500 @@ -0,0 +1,317 @@ +<html> +<head> +<title>MayaChemTools:Code:SortSDFiles.pl</title> +<meta http-equiv="content-type" content="text/html;charset=utf-8"> +<link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css"> +</head> +<body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> +<br/> +<center> +<a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> +</center> +<br/> +<pre> + 1 #!/usr/bin/perl -w + 2 <span class="c">#</span> + 3 <span class="c"># $RCSfile: SortSDFiles.pl,v $</span> + 4 <span class="c"># $Date: 2015/02/28 20:46:21 $</span> + 5 <span class="c"># $Revision: 1.26 $</span> + 6 <span class="c">#</span> + 7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span> + 8 <span class="c">#</span> + 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span> + 10 <span class="c">#</span> + 11 <span class="c"># This file is part of MayaChemTools.</span> + 12 <span class="c">#</span> + 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span> + 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span> + 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span> + 16 <span class="c"># later version.</span> + 17 <span class="c">#</span> + 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span> + 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span> + 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span> + 21 <span class="c"># details.</span> + 22 <span class="c">#</span> + 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span> + 24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span> + 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span> + 26 <span class="c"># Boston, MA, 02111-1307, USA.</span> + 27 <span class="c">#</span> + 28 + 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span> + 30 <span class="k">use</span> <span class="w">FindBin</span><span class="sc">;</span> <span class="k">use</span> <span class="w">lib</span> <span class="q">"$FindBin::Bin/../lib"</span><span class="sc">;</span> + 31 <span class="k">use</span> <span class="w">Getopt::Long</span><span class="sc">;</span> + 32 <span class="k">use</span> <span class="w">File::Basename</span><span class="sc">;</span> + 33 <span class="k">use</span> <span class="w">Text::ParseWords</span><span class="sc">;</span> + 34 <span class="k">use</span> <span class="w">Benchmark</span><span class="sc">;</span> + 35 <span class="k">use</span> <span class="w">FileUtil</span><span class="sc">;</span> + 36 <span class="k">use</span> <span class="w">SDFileUtil</span><span class="sc">;</span> + 37 <span class="k">use</span> <span class="w">TextUtil</span><span class="sc">;</span> + 38 + 39 <span class="k">my</span><span class="s">(</span><span class="i">$ScriptName</span><span class="cm">,</span> <span class="i">%Options</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="cm">,</span> <span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$TotalTime</span><span class="s">)</span><span class="sc">;</span> + 40 + 41 <span class="c"># Autoflush STDOUT</span> + 42 <span class="i">$|</span> = <span class="n">1</span><span class="sc">;</span> + 43 + 44 <span class="c"># Starting message...</span> + 45 <span class="i">$ScriptName</span> = <span class="i">basename</span><span class="s">(</span><span class="i">$0</span><span class="s">)</span><span class="sc">;</span> + 46 <span class="k">print</span> <span class="q">"\n$ScriptName: Starting...\n\n"</span><span class="sc">;</span> + 47 <span class="i">$StartTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span> + 48 + 49 <span class="c"># Get the options and setup script...</span> + 50 <span class="i">SetupScriptUsage</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 51 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">help</span>} || <span class="i">@ARGV</span> < <span class="n">1</span><span class="s">)</span> <span class="s">{</span> + 52 <span class="k">die</span> <span class="i">GetUsageFromPod</span><span class="s">(</span><span class="q">"$FindBin::Bin/$ScriptName"</span><span class="s">)</span><span class="sc">;</span> + 53 <span class="s">}</span> + 54 + 55 <span class="k">my</span><span class="s">(</span><span class="i">@SDFilesList</span><span class="s">)</span><span class="sc">;</span> + 56 <span class="i">@SDFilesList</span> = <span class="i">ExpandFileNames</span><span class="s">(</span>\<span class="i">@ARGV</span><span class="cm">,</span> <span class="q">"sdf sd"</span><span class="s">)</span><span class="sc">;</span> + 57 + 58 <span class="k">print</span> <span class="q">"Processing options...\n"</span><span class="sc">;</span> + 59 <span class="k">my</span><span class="s">(</span><span class="i">%OptionsInfo</span><span class="s">)</span><span class="sc">;</span> + 60 <span class="i">ProcessOptions</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 61 + 62 <span class="k">print</span> <span class="q">"Checking input SD file(s)...\n"</span><span class="sc">;</span> + 63 <span class="k">my</span><span class="s">(</span><span class="i">%SDFilesInfo</span><span class="s">)</span><span class="sc">;</span> + 64 <span class="i">RetrieveSDFilesInfo</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 65 + 66 <span class="c"># Generate output files...</span> + 67 <span class="k">my</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span> + 68 <span class="k">if</span> <span class="s">(</span><span class="i">@SDFilesList</span> > <span class="n">1</span><span class="s">)</span> <span class="s">{</span> + 69 <span class="k">print</span> <span class="q">"\nProcessing SD files...\n"</span><span class="sc">;</span> + 70 <span class="s">}</span> + 71 <span class="k">for</span> <span class="i">$FileIndex</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#SDFilesList</span><span class="s">)</span> <span class="s">{</span> + 72 <span class="k">if</span> <span class="s">(</span><span class="i">$SDFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$FileIndex</span>]<span class="s">)</span> <span class="s">{</span> + 73 <span class="k">print</span> <span class="q">"\nProcessing file $SDFilesList[$FileIndex]...\n"</span><span class="sc">;</span> + 74 <span class="i">SortSDFile</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span> + 75 <span class="s">}</span> + 76 <span class="s">}</span> + 77 <span class="k">print</span> <span class="q">"\n$ScriptName:Done...\n\n"</span><span class="sc">;</span> + 78 + 79 <span class="i">$EndTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span> + 80 <span class="i">$TotalTime</span> = <span class="w">timediff</span> <span class="s">(</span><span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="s">)</span><span class="sc">;</span> + 81 <span class="k">print</span> <span class="q">"Total time: "</span><span class="cm">,</span> <span class="i">timestr</span><span class="s">(</span><span class="i">$TotalTime</span><span class="s">)</span><span class="cm">,</span> <span class="q">"\n"</span><span class="sc">;</span> + 82 + 83 <span class="c">###############################################################################</span> + 84 + 85 <span class="c"># Sort it out...</span> +<a name="SortSDFile-"></a> 86 <span class="k">sub </span><span class="m">SortSDFile</span> <span class="s">{</span> + 87 <span class="k">my</span><span class="s">(</span><span class="i">$Index</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> + 88 <span class="k">my</span><span class="s">(</span><span class="i">$SDFile</span><span class="cm">,</span> <span class="i">$NewSDFile</span><span class="cm">,</span> <span class="i">$KeyDataFieldName</span><span class="s">)</span><span class="sc">;</span> + 89 + 90 <span class="i">$SDFile</span> = <span class="i">$SDFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span> + 91 <span class="i">$NewSDFile</span> = <span class="i">$SDFilesInfo</span>{<span class="w">OutFile</span>}[<span class="i">$Index</span>]<span class="sc">;</span> + 92 <span class="i">$KeyDataFieldName</span> = <span class="i">$SDFilesInfo</span>{<span class="w">KeyDataFieldName</span>}[<span class="i">$Index</span>]<span class="sc">;</span> + 93 + 94 <span class="k">print</span> <span class="q">"Generating new SD file $NewSDFile...\n"</span><span class="sc">;</span> + 95 <span class="k">open</span> <span class="w">NEWSDFILE</span><span class="cm">,</span> <span class="q">">$NewSDFile"</span> <span class="k">or</span> <span class="k">die</span> <span class="q">"Error: Couldn't open $NewSDFile: $! \n"</span><span class="sc">;</span> + 96 <span class="k">open</span> <span class="w">SDFILE</span><span class="cm">,</span> <span class="q">"$SDFile"</span> <span class="k">or</span> <span class="k">die</span> <span class="q">"Error: Can't open $SDFile: $! \n"</span><span class="sc">;</span> + 97 + 98 <span class="c"># Go over all compound records and store 'em using key value as hash...</span> + 99 <span class="k">my</span><span class="s">(</span><span class="i">%KeyToCompundRecordsMap</span><span class="cm">,</span> <span class="i">@InvalidCompoundRecords</span><span class="cm">,</span> <span class="i">$CmpdCount</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="cm">,</span> <span class="i">@CmpdLines</span><span class="cm">,</span> <span class="i">%DataFieldValues</span><span class="cm">,</span> <span class="i">$KeyDataFieldValue</span><span class="s">)</span><span class="sc">;</span> + 100 <span class="i">%KeyToCompundRecordsMap</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 101 <span class="i">@InvalidCompoundRecords</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 102 <span class="i">$CmpdCount</span> = <span class="n">0</span><span class="sc">;</span> + 103 + 104 <span class="j">COMPOUND:</span> <span class="k">while</span> <span class="s">(</span><span class="i">$CmpdString</span> = <span class="i">ReadCmpdString</span><span class="s">(</span>\<span class="i">*SDFILE</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 105 <span class="i">$CmpdCount</span>++<span class="sc">;</span> + 106 <span class="i">@CmpdLines</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="sc">;</span> + 107 <span class="i">%DataFieldValues</span> = <span class="i">GetCmpdDataHeaderLabelsAndValues</span><span class="s">(</span>\<span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span> + 108 <span class="c">#Make sure data field value is okay...</span> + 109 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="i">IsNotEmpty</span><span class="s">(</span><span class="i">$DataFieldValues</span>{<span class="i">$KeyDataFieldName</span>}<span class="s">)</span> && <span class="s">(</span><span class="i">$DataFieldValues</span>{<span class="i">$KeyDataFieldName</span>} !~ <span class="q">/\n/</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 110 <span class="k">push</span> <span class="i">@InvalidCompoundRecords</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="sc">;</span> + 111 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span> + 112 <span class="k">print</span> <span class="q">"Ignoring compound record $CmpdCount: Contains empty value for key data field $KeyDataFieldName :\n $CmpdString\n\n"</span><span class="sc">;</span> + 113 <span class="s">}</span> + 114 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span> + 115 <span class="k">print</span> <span class="q">"Ignoring compound record $CmpdCount: Contains empty value for key data field $KeyDataFieldName...\n"</span><span class="sc">;</span> + 116 <span class="s">}</span> + 117 <span class="k">next</span> <span class="j">COMPOUND</span><span class="sc">;</span> + 118 <span class="s">}</span> + 119 <span class="i">$KeyDataFieldValue</span> = <span class="i">$DataFieldValues</span>{<span class="i">$KeyDataFieldName</span>}<span class="sc">;</span> + 120 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} =~ <span class="q">/^numeric$/i</span><span class="s">)</span> <span class="s">{</span> + 121 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsFloat</span><span class="s">(</span><span class="i">$KeyDataFieldValue</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 122 <span class="k">push</span> <span class="i">@InvalidCompoundRecords</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="sc">;</span> + 123 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span> + 124 <span class="k">print</span> <span class="q">"Ignoring compound record $CmpdCount: Contains non-numerical value for key data field $KeyDataFieldName :\n $CmpdString\n\n"</span><span class="sc">;</span> + 125 <span class="s">}</span> + 126 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span> + 127 <span class="k">print</span> <span class="q">"Ignoring compound record $CmpdCount: Contains non-numerical value for key data field $KeyDataFieldName...\n"</span><span class="sc">;</span> + 128 <span class="s">}</span> + 129 <span class="k">next</span> <span class="j">COMPOUND</span><span class="sc">;</span> + 130 <span class="s">}</span> + 131 <span class="s">}</span> + 132 <span class="k">if</span> <span class="s">(</span><span class="k">exists</span><span class="s">(</span><span class="i">$KeyToCompundRecordsMap</span>{<span class="i">$KeyDataFieldValue</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 133 <span class="c"># Append to existing coompund data...</span> + 134 <span class="i">$KeyToCompundRecordsMap</span>{<span class="i">$KeyDataFieldValue</span>} .= <span class="q">"\n"</span> . <span class="i">$CmpdString</span><span class="sc">;</span> + 135 <span class="s">}</span> + 136 <span class="k">else</span> <span class="s">{</span> + 137 <span class="i">$KeyToCompundRecordsMap</span>{<span class="i">$KeyDataFieldValue</span>} = <span class="i">$CmpdString</span><span class="sc">;</span> + 138 <span class="s">}</span> + 139 <span class="s">}</span> + 140 + 141 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">Sort</span>} =~ <span class="q">/^ascending$/i</span><span class="s">)</span> <span class="s">{</span> + 142 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} =~ <span class="q">/^alphanumeric$/i</span><span class="s">)</span> <span class="s">{</span> + 143 <span class="k">for</span> <span class="i">$KeyDataFieldValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="k">lc</span><span class="s">(</span><span class="i">$a</span><span class="s">)</span> <span class="k">cmp</span> <span class="k">lc</span><span class="s">(</span><span class="i">$b</span><span class="s">)</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToCompundRecordsMap</span> <span class="s">)</span> <span class="s">{</span> + 144 <span class="k">print</span> <span class="i">NEWSDFILE</span> <span class="q">"$KeyToCompundRecordsMap{$KeyDataFieldValue}\n"</span><span class="sc">;</span> + 145 <span class="s">}</span> + 146 <span class="s">}</span> + 147 <span class="k">else</span> <span class="s">{</span> + 148 <span class="k">for</span> <span class="i">$KeyDataFieldValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="i">$a</span> <=> <span class="i">$b</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToCompundRecordsMap</span> <span class="s">)</span> <span class="s">{</span> + 149 <span class="k">print</span> <span class="i">NEWSDFILE</span> <span class="q">"$KeyToCompundRecordsMap{$KeyDataFieldValue}\n"</span><span class="sc">;</span> + 150 <span class="s">}</span> + 151 <span class="s">}</span> + 152 <span class="s">}</span> + 153 <span class="k">else</span> <span class="s">{</span> + 154 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} =~ <span class="q">/^alphanumeric$/i</span><span class="s">)</span> <span class="s">{</span> + 155 <span class="k">for</span> <span class="i">$KeyDataFieldValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="k">lc</span><span class="s">(</span><span class="i">$b</span><span class="s">)</span> <span class="k">cmp</span> <span class="k">lc</span><span class="s">(</span><span class="i">$a</span><span class="s">)</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToCompundRecordsMap</span> <span class="s">)</span> <span class="s">{</span> + 156 <span class="k">print</span> <span class="i">NEWSDFILE</span> <span class="q">"$KeyToCompundRecordsMap{$KeyDataFieldValue}\n"</span><span class="sc">;</span> + 157 <span class="s">}</span> + 158 <span class="s">}</span> + 159 <span class="k">else</span> <span class="s">{</span> + 160 <span class="k">for</span> <span class="i">$KeyDataFieldValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="i">$b</span> <=> <span class="i">$a</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToCompundRecordsMap</span> <span class="s">)</span> <span class="s">{</span> + 161 <span class="k">print</span> <span class="i">NEWSDFILE</span> <span class="q">"$KeyToCompundRecordsMap{$KeyDataFieldValue}\n"</span><span class="sc">;</span> + 162 <span class="s">}</span> + 163 <span class="s">}</span> + 164 <span class="s">}</span> + 165 <span class="c"># Append the records containing data not appropriate for sorting...</span> + 166 <span class="k">if</span> <span class="s">(</span><span class="i">@InvalidCompoundRecords</span><span class="s">)</span> <span class="s">{</span> + 167 <span class="k">print</span> <span class="q">"Placing "</span><span class="cm">,</span> <span class="k">scalar</span><span class="s">(</span><span class="i">@InvalidCompoundRecords</span><span class="s">)</span><span class="cm">,</span><span class="q">" compound record(s) with invalid data field key data the end...\n"</span><span class="sc">;</span> + 168 <span class="k">for</span> <span class="i">$CmpdString</span> <span class="s">(</span><span class="i">@InvalidCompoundRecords</span><span class="s">)</span> <span class="s">{</span> + 169 <span class="k">print</span> <span class="i">NEWSDFILE</span> <span class="q">"$CmpdString\n"</span><span class="sc">;</span> + 170 <span class="s">}</span> + 171 <span class="s">}</span> + 172 <span class="k">close</span> <span class="w">NEWSDFILE</span><span class="sc">;</span> + 173 <span class="k">close</span> <span class="w">SDFILE</span><span class="sc">;</span> + 174 <span class="s">}</span> + 175 + 176 <span class="c"># Retrieve information about input SD files...</span> +<a name="RetrieveSDFilesInfo-"></a> 177 <span class="k">sub </span><span class="m">RetrieveSDFilesInfo</span> <span class="s">{</span> + 178 <span class="k">my</span><span class="s">(</span><span class="i">$Index</span><span class="cm">,</span> <span class="i">$SDFile</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$OutFileRoot</span><span class="cm">,</span> <span class="i">$OutFile</span><span class="cm">,</span> <span class="i">$DataFieldName</span><span class="s">)</span><span class="sc">;</span> + 179 + 180 <span class="i">%SDFilesInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 181 + 182 <span class="i">@</span>{<span class="i">$SDFilesInfo</span>{<span class="w">FileOkay</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 183 <span class="i">@</span>{<span class="i">$SDFilesInfo</span>{<span class="w">OutFile</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 184 <span class="i">@</span>{<span class="i">$SDFilesInfo</span>{<span class="w">KeyDataFieldName</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 185 + 186 <span class="j">FILELIST:</span> <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#SDFilesList</span><span class="s">)</span> <span class="s">{</span> + 187 <span class="i">$SDFile</span> = <span class="i">$SDFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span> + 188 <span class="i">$SDFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span> + 189 <span class="i">$SDFilesInfo</span>{<span class="w">OutFile</span>}[<span class="i">$Index</span>] = <span class="q">""</span><span class="sc">;</span> + 190 <span class="i">$SDFilesInfo</span>{<span class="w">KeyDataFieldName</span>}[<span class="i">$Index</span>] = <span class="q">""</span><span class="sc">;</span> + 191 + 192 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$SDFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 193 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $SDFile: It doesn't exist\n"</span><span class="sc">;</span> + 194 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> + 195 <span class="s">}</span> + 196 <span class="k">if</span> <span class="s">(</span>!<span class="i">CheckFileType</span><span class="s">(</span><span class="i">$SDFile</span><span class="cm">,</span> <span class="q">"sd sdf"</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 197 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $SDFile: It's not a SD file\n"</span><span class="sc">;</span> + 198 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> + 199 <span class="s">}</span> + 200 <span class="i">$FileDir</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileName</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileExt</span> = <span class="q">""</span><span class="sc">;</span> + 201 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$SDFile</span><span class="s">)</span><span class="sc">;</span> + 202 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">root</span>} && <span class="s">(</span><span class="i">@SDFilesList</span> == <span class="n">1</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 203 <span class="k">my</span> <span class="s">(</span><span class="i">$RootFileDir</span><span class="cm">,</span> <span class="i">$RootFileName</span><span class="cm">,</span> <span class="i">$RootFileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">root</span>}<span class="s">)</span><span class="sc">;</span> + 204 <span class="k">if</span> <span class="s">(</span><span class="i">$RootFileName</span> && <span class="i">$RootFileExt</span><span class="s">)</span> <span class="s">{</span> + 205 <span class="i">$FileName</span> = <span class="i">$RootFileName</span><span class="sc">;</span> + 206 <span class="s">}</span> + 207 <span class="k">else</span> <span class="s">{</span> + 208 <span class="i">$FileName</span> = <span class="i">$Options</span>{<span class="w">root</span>}<span class="sc">;</span> + 209 <span class="s">}</span> + 210 <span class="i">$OutFileRoot</span> = <span class="i">$FileName</span><span class="sc">;</span> + 211 <span class="s">}</span> + 212 <span class="k">else</span> <span class="s">{</span> + 213 <span class="i">$OutFileRoot</span> = <span class="i">$FileName</span> . <span class="q">"SortedByDataField"</span><span class="sc">;</span> + 214 <span class="s">}</span> + 215 + 216 <span class="i">$OutFile</span> = <span class="i">$OutFileRoot</span> . <span class="q">".$FileExt"</span><span class="sc">;</span> + 217 <span class="k">if</span> <span class="s">(</span><span class="k">lc</span><span class="s">(</span><span class="i">$OutFile</span><span class="s">)</span> <span class="k">eq</span> <span class="k">lc</span><span class="s">(</span><span class="i">$SDFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 218 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $SDFile:Output file name, $OutFile, is same as input SD file name, $SDFile\n"</span><span class="sc">;</span> + 219 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> + 220 <span class="s">}</span> + 221 <span class="k">if</span> <span class="s">(</span>!<span class="i">$Options</span>{<span class="w">overwrite</span>}<span class="s">)</span> <span class="s">{</span> + 222 <span class="k">if</span> <span class="s">(</span><span class="k">-e</span> <span class="i">$OutFile</span><span class="s">)</span> <span class="s">{</span> + 223 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $SDFile: The file $OutFile already exists\n"</span><span class="sc">;</span> + 224 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> + 225 <span class="s">}</span> + 226 <span class="s">}</span> + 227 <span class="c"># Setup data field name...</span> + 228 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">SpecifiedDataFieldName</span>}<span class="s">)</span> <span class="s">{</span> + 229 <span class="i">$DataFieldName</span> = <span class="i">$OptionsInfo</span>{<span class="w">SpecifiedDataFieldName</span>}<span class="sc">;</span> + 230 <span class="s">}</span> + 231 <span class="k">else</span> <span class="s">{</span> + 232 <span class="k">my</span><span class="s">(</span><span class="i">$CmpdString</span><span class="cm">,</span> <span class="i">@CmpdLines</span><span class="cm">,</span> <span class="i">@DataFieldNames</span><span class="s">)</span><span class="sc">;</span> + 233 <span class="i">@DataFieldNames</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 234 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span><span class="s">(</span><span class="w">SDFILE</span><span class="cm">,</span> <span class="q">"$SDFile"</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 235 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $SDFile: Couldn't open it: $! \n"</span><span class="sc">;</span> + 236 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> + 237 <span class="s">}</span> + 238 <span class="i">$CmpdString</span> = <span class="i">ReadCmpdString</span><span class="s">(</span>\<span class="i">*SDFILE</span><span class="s">)</span><span class="sc">;</span> + 239 <span class="k">close</span> <span class="w">SDFILE</span><span class="sc">;</span> + 240 + 241 <span class="i">@CmpdLines</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="sc">;</span> + 242 <span class="i">@DataFieldNames</span> = <span class="i">GetCmpdDataHeaderLabels</span><span class="s">(</span>\<span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span> + 243 <span class="i">$DataFieldName</span> = <span class="i">$DataFieldNames</span>[<span class="n">0</span>]<span class="sc">;</span> + 244 <span class="s">}</span> + 245 + 246 <span class="i">$SDFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">1</span><span class="sc">;</span> + 247 <span class="i">$SDFilesInfo</span>{<span class="w">OutFile</span>}[<span class="i">$Index</span>] = <span class="q">"$OutFile"</span><span class="sc">;</span> + 248 <span class="i">$SDFilesInfo</span>{<span class="w">KeyDataFieldName</span>}[<span class="i">$Index</span>] = <span class="i">$DataFieldName</span><span class="sc">;</span> + 249 <span class="s">}</span> + 250 <span class="s">}</span> + 251 + 252 <span class="c"># Process option values...</span> +<a name="ProcessOptions-"></a> 253 <span class="k">sub </span><span class="m">ProcessOptions</span> <span class="s">{</span> + 254 <span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} = <span class="i">$Options</span>{<span class="w">detail</span>}<span class="sc">;</span> + 255 + 256 <span class="i">$OptionsInfo</span>{<span class="w">Key</span>} = <span class="k">defined</span> <span class="i">$Options</span>{<span class="w">key</span>} ? <span class="i">$Options</span>{<span class="w">key</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span> + 257 <span class="i">$OptionsInfo</span>{<span class="w">SpecifiedDataFieldName</span>} = <span class="q">""</span><span class="sc">;</span> + 258 <span class="k">if</span> <span class="s">(</span><span class="k">defined</span> <span class="i">$Options</span>{<span class="w">key</span>}<span class="s">)</span> <span class="s">{</span> + 259 <span class="i">$OptionsInfo</span>{<span class="w">SpecifiedDataFieldName</span>} = <span class="i">$Options</span>{<span class="w">key</span>}<span class="sc">;</span> + 260 <span class="s">}</span> + 261 + 262 <span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} = <span class="i">$Options</span>{<span class="w">keydata</span>}<span class="sc">;</span> + 263 <span class="i">$OptionsInfo</span>{<span class="w">Sort</span>} = <span class="i">$Options</span>{<span class="w">sort</span>}<span class="sc">;</span> + 264 + 265 <span class="i">$OptionsInfo</span>{<span class="w">Overwrite</span>} = <span class="k">defined</span> <span class="i">$Options</span>{<span class="w">overwrite</span>} ? <span class="i">$Options</span>{<span class="w">overwrite</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span> + 266 <span class="i">$OptionsInfo</span>{<span class="w">Root</span>} = <span class="k">defined</span> <span class="i">$Options</span>{<span class="w">root</span>} ? <span class="i">$Options</span>{<span class="w">root</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span> + 267 <span class="s">}</span> + 268 + 269 <span class="c"># Setup script usage and retrieve command line arguments specified using various options...</span> +<a name="SetupScriptUsage-"></a> 270 <span class="k">sub </span><span class="m">SetupScriptUsage</span> <span class="s">{</span> + 271 + 272 <span class="c"># Retrieve all the options...</span> + 273 <span class="i">%Options</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> + 274 <span class="i">$Options</span>{<span class="w">detail</span>} = <span class="n">1</span><span class="sc">;</span> + 275 <span class="i">$Options</span>{<span class="w">sort</span>} = <span class="q">"ascending"</span><span class="sc">;</span> + 276 <span class="i">$Options</span>{<span class="w">keydata</span>} = <span class="q">"numeric"</span><span class="sc">;</span> + 277 <span class="k">if</span> <span class="s">(</span>!<span class="i">GetOptions</span><span class="s">(</span>\<span class="i">%Options</span><span class="cm">,</span> <span class="q">"detail|d=i"</span><span class="cm">,</span> <span class="q">"help|h"</span><span class="cm">,</span> <span class="q">"key|k=s"</span><span class="cm">,</span> <span class="q">"keydata=s"</span><span class="cm">,</span> <span class="q">"overwrite|o"</span><span class="cm">,</span> <span class="q">"root|r=s"</span><span class="cm">,</span> <span class="q">"sort|s=s"</span><span class="cm">,</span> <span class="q">"workingdir|w=s"</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 278 <span class="k">die</span> <span class="q">"\nTo get a list of valid options and their values, use \"$ScriptName -h\" or\n\"perl -S $ScriptName -h\" command and try again...\n"</span><span class="sc">;</span> + 279 <span class="s">}</span> + 280 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span> + 281 <span class="k">if</span> <span class="s">(</span>! <span class="k">-d</span> <span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span> + 282 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{workingdir}, for option \"-w --workingdir\" is not a directory name.\n"</span><span class="sc">;</span> + 283 <span class="s">}</span> + 284 <span class="k">chdir</span> <span class="i">$Options</span>{<span class="w">workingdir</span>} <span class="k">or</span> <span class="k">die</span> <span class="q">"Error: Couldn't chdir $Options{workingdir}: $! \n"</span><span class="sc">;</span> + 285 <span class="s">}</span> + 286 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">keydata</span>} !~ <span class="q">/^(numeric|alphanumeric)$/i</span><span class="s">)</span> <span class="s">{</span> + 287 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{keydata}, for option \"--keydata\" is not valid. Allowed values: numeric or alphanumeric\n"</span><span class="sc">;</span> + 288 <span class="s">}</span> + 289 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">sort</span>} !~ <span class="q">/^(ascending|descending)$/i</span><span class="s">)</span> <span class="s">{</span> + 290 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{sort}, for option \"-s --sort\" is not valid. Allowed values: ascending or descending\n"</span><span class="sc">;</span> + 291 <span class="s">}</span> + 292 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">detail</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> + 293 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{detail}, for option \"-d --detail\" is not valid. Allowed values: > 0\n"</span><span class="sc">;</span> + 294 <span class="s">}</span> + 295 <span class="s">}</span> + 296 +<a name="EOF-"></a></pre> +<p> </p> +<br /> +<center> +<img src="../../../images/h2o2.png"> +</center> +</body> +</html>