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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 09:23:18 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/docs/scripts/html/TextFilesToSDFiles.html Wed Jan 20 09:23:18 2016 -0500 @@ -0,0 +1,112 @@ +<html> +<head> +<title>MayaChemTools:Documentation:TextFilesToSDFiles.pl</title> +<meta http-equiv="content-type" content="text/html;charset=utf-8"> +<link rel="stylesheet" type="text/css" href="../../css/MayaChemTools.css"> +</head> +<body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> +<br/> +<center> +<a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> +</center> +<br/> +<div class="DocNav"> +<table width="100%" border=0 cellpadding=0 cellspacing=2> +<tr align="left" valign="top"><td width="33%" align="left"><a href="./TextFilesToHTML.html" title="TextFilesToHTML.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./TopologicalAtomPairsFingerprints.html" title="TopologicalAtomPairsFingerprints.html">Next</a></td><td width="34%" align="middle"><strong>TextFilesToSDFiles.pl</strong></td><td width="33%" align="right"><a href="././code/TextFilesToSDFiles.html" title="View source code">Code</a> | <a href="./../pdf/TextFilesToSDFiles.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/TextFilesToSDFiles.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/TextFilesToSDFiles.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/TextFilesToSDFiles.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr> +</table> +</div> +<p> +</p> +<h2>NAME</h2> +<p>TextFilesToSDFiles.pl - Generate SD files from CSV or TSV TextFile(s)</p> +<p> +</p> +<h2>SYNOPSIS</h2> +<p>TextFilesToSDFiles.pl TextFile(s)...</p> +<p>TextFilesToSDFiles.pl [<strong>-h, --help</strong>] [<strong>--indelim</strong> comma | semicolon] [<strong>-l, --label</strong> yes | no] +[<strong>-o, --overwrite</strong>] [<strong>-r, --root</strong> rootname] [<strong>-w, --workingdir</strong> dirname] TextFile(s)...</p> +<p> +</p> +<h2>DESCRIPTION</h2> +<p>Generate SD files from CSV or TSV <em>TextFile(s)</em>. The new SD files contain no structure data +as indicated by empty structure data block; Data fields and values in SD files are generated +using <em>TextFile(s)</em> column labels and corresponding data values.</p> +<p>Multiple <em>TextFile(s)</em> names are separated by space. The valid file extensions are +<em>.csv</em> and <em>.tsv</em> for comma/semicolon and tab delimited text files respectively. +All other file names are ignored. All the text files in a current directory can be specified +by <em>*.csv</em>, <em>*.tsv</em>, or the current directory name. The <strong>--indelim</strong> option +determines the format of <em>TextFile(s)</em>. Any file which doesn't correspond to +the format indicated by <strong>--indelim</strong> option is ignored.</p> +<p> +</p> +<h2>OPTIONS</h2> +<dl> +<dt><strong><strong>-h, --help</strong></strong></dt> +<dd> +<p>Print this help message.</p> +</dd> +<dt><strong><strong>--indelim</strong> <em>comma | semicolon</em></strong></dt> +<dd> +<p>Input delimiter for CSV <em>TextFile(s)</em>. Possible values: <em>comma or semicolon</em>. +Default value: <em>comma</em>. For TSV files, this option is ignored and <em>tab</em> is used as a +delimiter.</p> +</dd> +<dt><strong><strong>-l, --label</strong> <em>yes | no</em></strong></dt> +<dd> +<p>First line contains column labels. Possible values: <em>yes or no</em>. Default value: <em>yes</em>. +Column labels are used to create SD data field labels; otherwise, data field labels look +like Column<colnumber>Data.</p> +</dd> +<dt><strong><strong>-o, --overwrite</strong></strong></dt> +<dd> +<p>Overwrite existing files.</p> +</dd> +<dt><strong><strong>-r, --root</strong> <em>rootname</em></strong></dt> +<dd> +<p>New SD file names are generated using the root: <Root>.sdf. Default new file names: +<TextFileName>WithNoStrData.sdf. This option is ignored for multiple input files.</p> +</dd> +<dt><strong><strong>-w, --workingdir</strong> <em>dirname</em></strong></dt> +<dd> +<p>Location of working directory. Default: current directory.</p> +</dd> +</dl> +<p> +</p> +<h2>EXAMPLES</h2> +<p>To generate NewSample1.sdf file from Sample1.csv file, type:</p> +<div class="ExampleBox"> + % TextFilesToSDFiles.pl -o -r NewSample1 Sample1.csv</div> +<p>To generate NewSample1.sdf file from Sample1.tsv file which doesn't +contain column labels line, type:</p> +<div class="ExampleBox"> + % TextFilesToSDFiles.pl --label no -o -r NewSample1 Sample1.tsv</div> +<p> +</p> +<h2>AUTHOR</h2> +<p><a href="mailto:msud@san.rr.com">Manish Sud</a></p> +<p> +</p> +<h2>SEE ALSO</h2> +<p><a href="./JoinTextFiles.html">JoinTextFiles.pl</a>, <a href="./MergeTextFiles.html">MergeTextFiles.pl</a>, <a href="./ModifySDFilesDataFields.html">ModifySDFilesDataFields.pl</a>, <a href="./ModifyTextFilesFormat.html">ModifyTextFilesFormat.pl</a> +</p> +<p> +</p> +<h2>COPYRIGHT</h2> +<p>Copyright (C) 2015 Manish Sud. All rights reserved.</p> +<p>This file is part of MayaChemTools.</p> +<p>MayaChemTools is free software; you can redistribute it and/or modify it under +the terms of the GNU Lesser General Public License as published by the Free +Software Foundation; either version 3 of the License, or (at your option) +any later version.</p> +<p> </p><p> </p><div class="DocNav"> +<table width="100%" border=0 cellpadding=0 cellspacing=2> +<tr align="left" valign="top"><td width="33%" align="left"><a href="./TextFilesToHTML.html" title="TextFilesToHTML.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./TopologicalAtomPairsFingerprints.html" title="TopologicalAtomPairsFingerprints.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>TextFilesToSDFiles.pl</strong></td></tr> +</table> +</div> +<br /> +<center> +<img src="../../images/h2o2.png"> +</center> +</body> +</html>