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1 <html>
2 <head>
3 <title>MayaChemTools:Code:InfoFingerprintsFiles.pl</title>
4 <meta http-equiv="content-type" content="text/html;charset=utf-8">
5 <link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css">
6 </head>
7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10">
8 <br/>
9 <center>
10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a>
11 </center>
12 <br/>
13 <pre>
14 1 #!/usr/bin/perl -w
15 2 <span class="c">#</span>
16 3 <span class="c"># $RCSfile: InfoFingerprintsFiles.pl,v $</span>
17 4 <span class="c"># $Date: 2015/02/28 20:46:20 $</span>
18 5 <span class="c"># $Revision: 1.20 $</span>
19 6 <span class="c">#</span>
20 7 <span class="c"># Author: Manish Sud &lt;msud@san.rr.com&gt;</span>
21 8 <span class="c">#</span>
22 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span>
23 10 <span class="c">#</span>
24 11 <span class="c"># This file is part of MayaChemTools.</span>
25 12 <span class="c">#</span>
26 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span>
27 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span>
28 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span>
29 16 <span class="c"># later version.</span>
30 17 <span class="c">#</span>
31 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span>
32 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span>
33 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span>
34 21 <span class="c"># details.</span>
35 22 <span class="c">#</span>
36 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span>
37 24 <span class="c"># along with MayaChemTools; if not, see &lt;http://www.gnu.org/licenses/&gt; or</span>
38 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span>
39 26 <span class="c"># Boston, MA, 02111-1307, USA.</span>
40 27 <span class="c">#</span>
41 28
42 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span>
43 30 <span class="k">use</span> <span class="w">FindBin</span><span class="sc">;</span> <span class="k">use</span> <span class="w">lib</span> <span class="q">&quot;$FindBin::Bin/../lib&quot;</span><span class="sc">;</span>
44 31 <span class="k">use</span> <span class="w">Getopt::Long</span><span class="sc">;</span>
45 32 <span class="k">use</span> <span class="w">File::Basename</span><span class="sc">;</span>
46 33 <span class="k">use</span> <span class="w">Text::ParseWords</span><span class="sc">;</span>
47 34 <span class="k">use</span> <span class="w">Benchmark</span><span class="sc">;</span>
48 35 <span class="k">use</span> <span class="w">FileUtil</span><span class="sc">;</span>
49 36 <span class="k">use</span> <span class="w">TextUtil</span><span class="sc">;</span>
50 37 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsFileUtil</span><span class="sc">;</span>
51 38 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsStringUtil</span><span class="sc">;</span>
52 39
53 40 <span class="k">my</span><span class="s">(</span><span class="i">$ScriptName</span><span class="cm">,</span> <span class="i">%Options</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="cm">,</span> <span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$TotalTime</span><span class="s">)</span><span class="sc">;</span>
54 41
55 42 <span class="c"># Autoflush STDOUT</span>
56 43 <span class="i">$|</span> = <span class="n">1</span><span class="sc">;</span>
57 44
58 45 <span class="c"># Starting message...</span>
59 46 <span class="i">$ScriptName</span> = <span class="i">basename</span><span class="s">(</span><span class="i">$0</span><span class="s">)</span><span class="sc">;</span>
60 47 <span class="k">print</span> <span class="q">&quot;\n$ScriptName: Starting...\n\n&quot;</span><span class="sc">;</span>
61 48 <span class="i">$StartTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span>
62 49
63 50 <span class="c"># Get the options and setup script...</span>
64 51 <span class="i">SetupScriptUsage</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
65 52 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">help</span>} || <span class="i">@ARGV</span> &lt; <span class="n">1</span><span class="s">)</span> <span class="s">{</span>
66 53 <span class="k">die</span> <span class="i">GetUsageFromPod</span><span class="s">(</span><span class="q">&quot;$FindBin::Bin/$ScriptName&quot;</span><span class="s">)</span><span class="sc">;</span>
67 54 <span class="s">}</span>
68 55
69 56 <span class="k">my</span><span class="s">(</span><span class="i">@FingerprintsFilesList</span><span class="s">)</span><span class="sc">;</span>
70 57 <span class="i">@FingerprintsFilesList</span> = <span class="i">ExpandFileNames</span><span class="s">(</span>\<span class="i">@ARGV</span><span class="cm">,</span> <span class="q">&quot;sdf sd fpf fp csv tsv&quot;</span><span class="s">)</span><span class="sc">;</span>
71 58
72 59 <span class="c"># Process options...</span>
73 60 <span class="k">print</span> <span class="q">&quot;Processing options...\n&quot;</span><span class="sc">;</span>
74 61 <span class="k">my</span><span class="s">(</span><span class="i">%OptionsInfo</span><span class="s">)</span><span class="sc">;</span>
75 62 <span class="i">ProcessOptions</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
76 63
77 64 <span class="c"># Setup information about input files...</span>
78 65 <span class="k">print</span> <span class="q">&quot;Checking input fingerprints file(s)...\n&quot;</span><span class="sc">;</span>
79 66 <span class="k">my</span><span class="s">(</span><span class="i">%FingerprintsFilesInfo</span><span class="s">)</span><span class="sc">;</span>
80 67 <span class="i">RetrieveFingerprintsFilesInfo</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
81 68
82 69 <span class="c"># Process input files..</span>
83 70 <span class="k">my</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span>
84 71 <span class="k">if</span> <span class="s">(</span><span class="i">@FingerprintsFilesList</span> &gt; <span class="n">1</span><span class="s">)</span> <span class="s">{</span>
85 72 <span class="k">print</span> <span class="q">&quot;\nProcessing fingerprints files...\n&quot;</span><span class="sc">;</span>
86 73 <span class="s">}</span>
87 74 <span class="k">for</span> <span class="i">$FileIndex</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#FingerprintsFilesList</span><span class="s">)</span> <span class="s">{</span>
88 75 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$FileIndex</span>]<span class="s">)</span> <span class="s">{</span>
89 76 <span class="k">print</span> <span class="q">&quot;\nProcessing file $FingerprintsFilesList[$FileIndex]...\n&quot;</span><span class="sc">;</span>
90 77 <span class="i">ListFingerprintsFileInfo</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span>
91 78 <span class="s">}</span>
92 79 <span class="s">}</span>
93 80 <span class="i">ListTotalSizeOfFiles</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
94 81
95 82 <span class="k">print</span> <span class="q">&quot;\n$ScriptName:Done...\n\n&quot;</span><span class="sc">;</span>
96 83
97 84 <span class="i">$EndTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span>
98 85 <span class="i">$TotalTime</span> = <span class="w">timediff</span> <span class="s">(</span><span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="s">)</span><span class="sc">;</span>
99 86 <span class="k">print</span> <span class="q">&quot;Total time: &quot;</span><span class="cm">,</span> <span class="i">timestr</span><span class="s">(</span><span class="i">$TotalTime</span><span class="s">)</span><span class="cm">,</span> <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
100 87
101 88 <span class="c">###############################################################################</span>
102 89
103 90 <span class="c"># List approptiate information...</span>
104 91 <span class="c">#</span>
105 <a name="ListFingerprintsFileInfo-"></a> 92 <span class="k">sub </span><span class="m">ListFingerprintsFileInfo</span> <span class="s">{</span>
106 93 <span class="k">my</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
107 94 <span class="k">my</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$InvalidFingerprintsFileData</span><span class="cm">,</span> <span class="i">$InvalidFingerprintsData</span><span class="cm">,</span> <span class="i">$DataEntryCount</span><span class="cm">,</span> <span class="i">$ValidDataEntryCount</span><span class="cm">,</span> <span class="i">$InvalidDataEntryCount</span><span class="cm">,</span> <span class="i">$MissingDataEntryCount</span><span class="cm">,</span> <span class="i">$BitVectorDataEntryCount</span><span class="cm">,</span> <span class="i">$VectorDataEntryCount</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$TotalBitDensity</span><span class="cm">,</span> <span class="i">$FileType</span><span class="cm">,</span> <span class="i">$DataEntryLabel</span><span class="s">)</span><span class="sc">;</span>
108 95
109 96 <span class="i">$FileType</span> = <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}[<span class="i">$FileIndex</span>]<span class="sc">;</span>
110 97 <span class="i">$DataEntryLabel</span> = <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> ? <span class="q">&#39;compounds&#39;</span> <span class="co">:</span> <span class="q">&#39;lines&#39;</span><span class="sc">;</span>
111 98
112 99 <span class="s">(</span><span class="i">$DataEntryCount</span><span class="cm">,</span> <span class="i">$ValidDataEntryCount</span><span class="cm">,</span> <span class="i">$InvalidDataEntryCount</span><span class="cm">,</span> <span class="i">$MissingDataEntryCount</span><span class="cm">,</span> <span class="i">$BitVectorDataEntryCount</span><span class="cm">,</span> <span class="i">$VectorDataEntryCount</span><span class="cm">,</span> <span class="i">$TotalBitDensity</span><span class="s">)</span> = <span class="s">(</span><span class="n">0</span><span class="s">)</span> x <span class="n">7</span><span class="sc">;</span>
113 100
114 101 <span class="i">$FingerprintsFileIO</span> = <span class="i">Fingerprints::FingerprintsFileUtil::NewFingerprintsFileIO</span><span class="s">(</span><span class="i">%</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}[<span class="i">$FileIndex</span>]}<span class="s">)</span><span class="sc">;</span>
115 102 <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;Open</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
116 103
117 104 <span class="i">$InvalidFingerprintsFileData</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;IsFingerprintsFileDataValid</span><span class="s">(</span><span class="s">)</span> ? <span class="n">0</span> <span class="co">:</span> <span class="n">1</span><span class="sc">;</span>
118 105
119 106 <span class="j">FINGERPRINTS:</span> <span class="k">while</span> <span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="i">-&gt;Read</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
120 107 <span class="i">$DataEntryCount</span>++<span class="sc">;</span>
121 108
122 109 <span class="c"># Missing data...</span>
123 110 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsFileData</span><span class="s">)</span> <span class="s">{</span>
124 111 <span class="i">$MissingDataEntryCount</span>++<span class="sc">;</span>
125 112 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>} || <span class="i">$OptionsInfo</span>{<span class="w">CountEmptyFingerprints</span>}<span class="s">)</span> <span class="s">{</span>
126 113 <span class="i">ListEmptyOrInvalidFingerprintsDataInfo</span><span class="s">(</span><span class="q">&#39;EmptyData&#39;</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span>
127 114 <span class="s">}</span>
128 115 <span class="k">next</span> <span class="j">FINGERPRINTS</span><span class="sc">;</span>
129 116 <span class="s">}</span>
130 117 <span class="i">$InvalidFingerprintsData</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;IsFingerprintsDataValid</span><span class="s">(</span><span class="s">)</span> ? <span class="n">0</span> <span class="co">:</span> <span class="n">1</span><span class="sc">;</span>
131 118
132 119 <span class="c"># Invalid data...</span>
133 120 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span> <span class="s">{</span>
134 121 <span class="i">$InvalidDataEntryCount</span>++<span class="sc">;</span>
135 122 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span>
136 123 <span class="i">ListEmptyOrInvalidFingerprintsDataInfo</span><span class="s">(</span><span class="q">&#39;InvalidData&#39;</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span>
137 124 <span class="s">}</span>
138 125 <span class="k">next</span> <span class="j">FINGERPRINTS</span><span class="sc">;</span>
139 126 <span class="s">}</span>
140 127 <span class="i">$ValidDataEntryCount</span>++<span class="sc">;</span>
141 128
142 129 <span class="i">$FingerprintsObject</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetFingerprints</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
143 130 <span class="i">$FingerprintsType</span> = <span class="i">$FingerprintsObject</span><span class="i">-&gt;GetVectorType</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
144 131
145 132 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
146 133 <span class="i">$BitVectorDataEntryCount</span>++<span class="sc">;</span>
147 134 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>}<span class="s">)</span> <span class="s">{</span>
148 135 <span class="i">$TotalBitDensity</span> += <span class="i">$FingerprintsObject</span><span class="i">-&gt;GetFingerprintsBitDensity</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
149 136 <span class="s">}</span>
150 137 <span class="s">}</span>
151 138 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
152 139 <span class="i">$VectorDataEntryCount</span>++<span class="sc">;</span>
153 140 <span class="s">}</span>
154 141
155 142 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDataEntryInfo</span>}<span class="s">)</span> <span class="s">{</span>
156 143 <span class="i">ListFingerprintsDataEntryInfo</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span>
157 144 <span class="s">}</span>
158 145
159 146 <span class="s">}</span>
160 147 <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;Close</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
161 148
162 149 <span class="k">print</span> <span class="q">&quot;\nFingerprints file type: $FileType\n&quot;</span><span class="sc">;</span>
163 150 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span>
164 151 <span class="k">print</span> <span class="q">&quot;Number of compounds: $DataEntryCount\n&quot;</span><span class="sc">;</span>
165 152 <span class="s">}</span>
166 153 <span class="k">else</span> <span class="s">{</span>
167 154 <span class="k">print</span> <span class="q">&quot;Number of data lines: $DataEntryCount\n&quot;</span><span class="sc">;</span>
168 155 <span class="s">}</span>
169 156
170 157 <span class="i">ListFileTypeHeaderInfo</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span>
171 158
172 159 <span class="k">print</span> <span class="q">&quot;\nNumber of $DataEntryLabel with valid fingerprints string data: $ValidDataEntryCount\n&quot;</span><span class="sc">;</span>
173 160 <span class="k">print</span> <span class="q">&quot;Number of $DataEntryLabel with bit-vector fingerprints string data: $BitVectorDataEntryCount\n&quot;</span><span class="sc">;</span>
174 161 <span class="k">print</span> <span class="q">&quot;Number of $DataEntryLabel with vector fingerprints string data: $VectorDataEntryCount\n&quot;</span><span class="sc">;</span>
175 162
176 163 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">CountEmptyFingerprints</span>}<span class="s">)</span> <span class="s">{</span>
177 164 <span class="k">print</span> <span class="q">&quot;Number of $DataEntryLabel with missing fingerprints data: $MissingDataEntryCount\n&quot;</span><span class="sc">;</span>
178 165 <span class="k">print</span> <span class="q">&quot;Number of $DataEntryLabel with invalid fingerprints data: $InvalidDataEntryCount\n&quot;</span><span class="sc">;</span>
179 166 <span class="s">}</span>
180 167
181 168 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>} &amp;&amp; <span class="i">$BitVectorDataEntryCount</span><span class="s">)</span> <span class="s">{</span>
182 169 <span class="k">my</span><span class="s">(</span><span class="i">$AverageBitDensity</span><span class="s">)</span><span class="sc">;</span>
183 170 <span class="i">$AverageBitDensity</span> = <span class="i">$TotalBitDensity</span>/<span class="i">$BitVectorDataEntryCount</span><span class="sc">;</span>
184 171 <span class="i">$AverageBitDensity</span> = <span class="k">sprintf</span><span class="s">(</span><span class="q">&quot;%.2f&quot;</span><span class="cm">,</span> <span class="i">$AverageBitDensity</span><span class="s">)</span> + <span class="n">0</span><span class="sc">;</span>
185 172 <span class="k">print</span> <span class="q">&quot;\nAverage bit density: $AverageBitDensity\n&quot;</span><span class="sc">;</span>
186 173 <span class="s">}</span>
187 174
188 175
189 176 <span class="c"># File size and modification information...</span>
190 177 <span class="k">print</span> <span class="q">&quot;\nFile size: &quot;</span><span class="cm">,</span> <span class="i">FormatFileSize</span><span class="s">(</span><span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$FileIndex</span>]<span class="s">)</span><span class="cm">,</span> <span class="q">&quot; \n&quot;</span><span class="sc">;</span>
191 178 <span class="k">print</span> <span class="q">&quot;Last modified: &quot;</span><span class="cm">,</span> <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}[<span class="i">$FileIndex</span>]<span class="cm">,</span> <span class="q">&quot; \n&quot;</span><span class="sc">;</span>
192 179 <span class="s">}</span>
193 180
194 181 <span class="c"># List empty or invalid fingerprints file data information...</span>
195 182 <span class="c">#</span>
196 <a name="ListEmptyOrInvalidFingerprintsDataInfo-"></a> 183 <span class="k">sub </span><span class="m">ListEmptyOrInvalidFingerprintsDataInfo</span> <span class="s">{</span>
197 184 <span class="k">my</span><span class="s">(</span><span class="i">$Mode</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
198 185 <span class="k">my</span><span class="s">(</span><span class="i">$ModeInfo</span><span class="s">)</span><span class="sc">;</span>
199 186
200 187 <span class="i">$ModeInfo</span> = <span class="s">(</span><span class="i">$Mode</span> =~ <span class="q">/^EmptyData$/i</span><span class="s">)</span> ? <span class="q">&quot;no&quot;</span> <span class="co">:</span> <span class="q">&quot;invalid&quot;</span><span class="sc">;</span>
201 188
202 189 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span>
203 190 <span class="k">my</span><span class="s">(</span><span class="i">$CmpdNum</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="s">)</span><span class="sc">;</span>
204 191
205 192 <span class="i">$CmpdNum</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetCompoundNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
206 193 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span>
207 194 <span class="i">$CmpdString</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetCompoundString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
208 195 <span class="k">print</span> <span class="q">&quot;Compound number $CmpdNum contains $ModeInfo fingerprints data: $CmpdString \n&quot;</span><span class="sc">;</span>
209 196 <span class="s">}</span>
210 197 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">1</span> <span class="s">)</span> <span class="s">{</span>
211 198 <span class="k">print</span> <span class="q">&quot;Compound number $CmpdNum contains $ModeInfo fingerprints data...\n&quot;</span><span class="sc">;</span>
212 199 <span class="s">}</span>
213 200 <span class="s">}</span>
214 201 <span class="k">else</span> <span class="s">{</span>
215 202 <span class="k">my</span><span class="s">(</span><span class="i">$LineNum</span><span class="cm">,</span> <span class="i">$DataLine</span><span class="s">)</span><span class="sc">;</span>
216 203
217 204 <span class="i">$LineNum</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetLineNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
218 205 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span>
219 206 <span class="i">$DataLine</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
220 207 <span class="k">print</span> <span class="q">&quot;Data line number $LineNum contains $ModeInfo fingerprints data: $DataLine \n&quot;</span><span class="sc">;</span>
221 208 <span class="s">}</span>
222 209 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">1</span> <span class="s">)</span> <span class="s">{</span>
223 210 <span class="k">print</span> <span class="q">&quot;Data line number $LineNum contains $ModeInfo fingerprints data...\n&quot;</span><span class="sc">;</span>
224 211 <span class="s">}</span>
225 212 <span class="s">}</span>
226 213 <span class="s">}</span>
227 214
228 215 <span class="c"># List detailed information about fingerprints data entry...</span>
229 216 <span class="c">#</span>
230 <a name="ListFingerprintsDataEntryInfo-"></a> 217 <span class="k">sub </span><span class="m">ListFingerprintsDataEntryInfo</span> <span class="s">{</span>
231 218 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
232 219 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">$FingerprintsSize</span><span class="cm">,</span> <span class="i">$FingerprintsBitStringFormat</span><span class="cm">,</span> <span class="i">$FingerprintsBitOrder</span><span class="cm">,</span> <span class="i">$BitDensity</span><span class="cm">,</span> <span class="i">$NumOfOnBits</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesType</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesFormat</span><span class="cm">,</span> <span class="i">$NumOfNonZeroValues</span><span class="s">)</span><span class="sc">;</span>
233 220
234 221 <span class="i">$FingerprintsObject</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetFingerprints</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
235 222 <span class="i">$FingerprintsString</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
236 223
237 224 <span class="i">$FingerprintsType</span> = <span class="i">$FingerprintsObject</span><span class="i">-&gt;GetVectorType</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
238 225
239 226 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
240 227 <span class="i">$BitDensity</span> = <span class="q">&#39;&#39;</span><span class="sc">;</span>
241 228 <span class="i">$NumOfOnBits</span> = <span class="q">&#39;&#39;</span><span class="sc">;</span>
242 229
243 230 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">$FingerprintsSize</span><span class="cm">,</span> <span class="i">$FingerprintsBitStringFormat</span><span class="cm">,</span> <span class="i">$FingerprintsBitOrder</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$FingerprintsString</span><span class="s">)</span><span class="sc">;</span>
244 231
245 232 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>}<span class="s">)</span> <span class="s">{</span>
246 233 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>}<span class="s">)</span> <span class="s">{</span>
247 234 <span class="i">$BitDensity</span> = <span class="i">$FingerprintsObject</span><span class="i">-&gt;GetFingerprintsBitDensity</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
248 235 <span class="s">}</span>
249 236 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>}<span class="s">)</span> <span class="s">{</span>
250 237 <span class="i">$NumOfOnBits</span> = <span class="i">$FingerprintsObject</span><span class="i">-&gt;GetNumOfSetBits</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
251 238 <span class="s">}</span>
252 239 <span class="s">}</span>
253 240 <span class="s">}</span>
254 241 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
255 242 <span class="i">$NumOfNonZeroValues</span> = <span class="q">&#39;&#39;</span><span class="sc">;</span>
256 243
257 244 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">$FingerprintsSize</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesType</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesFormat</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$FingerprintsString</span><span class="s">)</span><span class="sc">;</span>
258 245
259 246 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>}<span class="s">)</span> <span class="s">{</span>
260 247 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsVectorValuesType</span> =~ <span class="q">/^AlphaNumericalValues$/i</span><span class="s">)</span> <span class="s">{</span>
261 248 <span class="i">$NumOfNonZeroValues</span> = <span class="q">&#39;NA&#39;</span><span class="sc">;</span>
262 249 <span class="s">}</span>
263 250 <span class="k">else</span> <span class="s">{</span>
264 251 <span class="i">$NumOfNonZeroValues</span> = <span class="i">$FingerprintsObject</span><span class="i">-&gt;GetNumOfNonZeroValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
265 252 <span class="s">}</span>
266 253 <span class="s">}</span>
267 254 <span class="s">}</span>
268 255
269 256 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span>
270 257 <span class="k">print</span> <span class="q">&quot;Compound number: &quot;</span> . <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetCompoundNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
271 258 <span class="s">}</span>
272 259 <span class="k">else</span> <span class="s">{</span>
273 260 <span class="k">print</span> <span class="q">&quot;Data line number: &quot;</span> . <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetLineNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
274 261 <span class="s">}</span>
275 262
276 263 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsType</span>}<span class="s">)</span> <span class="s">{</span>
277 264 <span class="k">print</span> <span class="q">&quot;; FPType: $FingerprintsType&quot;</span><span class="sc">;</span>
278 265 <span class="s">}</span>
279 266 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDescription</span>}<span class="s">)</span> <span class="s">{</span>
280 267 <span class="k">print</span> <span class="q">&quot;; FPDescription: $FingerprintsDescription&quot;</span><span class="sc">;</span>
281 268 <span class="s">}</span>
282 269 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsSize</span>}<span class="s">)</span> <span class="s">{</span>
283 270 <span class="k">print</span> <span class="q">&quot;; FPSize: $FingerprintsSize&quot;</span><span class="sc">;</span>
284 271 <span class="s">}</span>
285 272
286 273 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
287 274 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitStringFormat</span>}<span class="s">)</span> <span class="s">{</span>
288 275 <span class="k">print</span> <span class="q">&quot;; FPBitStringFormat: $FingerprintsBitStringFormat&quot;</span><span class="sc">;</span>
289 276 <span class="s">}</span>
290 277 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitOrder</span>}<span class="s">)</span> <span class="s">{</span>
291 278 <span class="k">print</span> <span class="q">&quot;; FPBitOrder: $FingerprintsBitOrder&quot;</span><span class="sc">;</span>
292 279 <span class="s">}</span>
293 280 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>}<span class="s">)</span> <span class="s">{</span>
294 281 <span class="k">print</span> <span class="q">&quot;; BitDensity: $BitDensity&quot;</span><span class="sc">;</span>
295 282 <span class="s">}</span>
296 283 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>}<span class="s">)</span> <span class="s">{</span>
297 284 <span class="k">print</span> <span class="q">&quot;; NumOfOnBits: $NumOfOnBits&quot;</span><span class="sc">;</span>
298 285 <span class="s">}</span>
299 286 <span class="s">}</span>
300 287 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
301 288 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesType</span>}<span class="s">)</span> <span class="s">{</span>
302 289 <span class="k">print</span> <span class="q">&quot;; FPVectorValuesType: $FingerprintsVectorValuesType&quot;</span><span class="sc">;</span>
303 290 <span class="s">}</span>
304 291 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesFormat</span>}<span class="s">)</span> <span class="s">{</span>
305 292 <span class="k">print</span> <span class="q">&quot;; FPVectorValuesFormat: $FingerprintsVectorValuesFormat&quot;</span><span class="sc">;</span>
306 293 <span class="s">}</span>
307 294 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>}<span class="s">)</span> <span class="s">{</span>
308 295 <span class="k">print</span> <span class="q">&quot;; NumOfNonZeroValues: $NumOfNonZeroValues&quot;</span><span class="sc">;</span>
309 296 <span class="s">}</span>
310 297 <span class="s">}</span>
311 298 <span class="k">print</span> <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
312 299 <span class="s">}</span>
313 300
314 301 <span class="c"># List file type header information...</span>
315 302 <span class="c">#</span>
316 <a name="ListFileTypeHeaderInfo-"></a> 303 <span class="k">sub </span><span class="m">ListFileTypeHeaderInfo</span> <span class="s">{</span>
317 304 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
318 305 <span class="k">my</span><span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">@DataColLabels</span><span class="cm">,</span> <span class="i">%HeaderDataKeysAndValues</span><span class="s">)</span><span class="sc">;</span>
319 306
320 307 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^Text$/i</span><span class="s">)</span> <span class="s">{</span>
321 308 <span class="i">@DataColLabels</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetDataColLabels</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
322 309 <span class="k">print</span> <span class="q">&quot;Number of columns: &quot;</span> . <span class="k">scalar</span> <span class="i">@DataColLabels</span> . <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
323 310 <span class="k">print</span> <span class="q">&quot;Column labels: &quot;</span><span class="cm">,</span> <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@DataColLabels</span><span class="cm">,</span> <span class="q">&quot;, &quot;</span><span class="cm">,</span> <span class="n">1</span><span class="s">)</span><span class="cm">,</span> <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
324 311 <span class="s">}</span>
325 312 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^FP$/i</span><span class="s">)</span> <span class="s">{</span>
326 313 <span class="i">%HeaderDataKeysAndValues</span> = <span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetHeaderDataKeysAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
327 314
328 315 <span class="k">print</span> <span class="q">&quot;\nFP file header data keys and values: \n#\n&quot;</span><span class="sc">;</span>
329 316 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="i">-&gt;GetHeaderDataKeys</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
330 317 <span class="i">$Value</span> = <span class="i">$HeaderDataKeysAndValues</span>{<span class="i">$Key</span>}<span class="sc">;</span>
331 318 <span class="k">print</span> <span class="q">&quot;# $Key = $Value\n&quot;</span><span class="sc">;</span>
332 319 <span class="s">}</span>
333 320 <span class="k">print</span> <span class="q">&quot;#\n&quot;</span><span class="sc">;</span>
334 321 <span class="s">}</span>
335 322 <span class="s">}</span>
336 323
337 324 <span class="c"># Total size of all the fiels...</span>
338 <a name="ListTotalSizeOfFiles-"></a> 325 <span class="k">sub </span><span class="m">ListTotalSizeOfFiles</span> <span class="s">{</span>
339 326 <span class="k">my</span><span class="s">(</span><span class="i">$FileOkayCount</span><span class="cm">,</span> <span class="i">$TotalSize</span><span class="cm">,</span> <span class="i">$Index</span><span class="s">)</span><span class="sc">;</span>
340 327
341 328 <span class="i">$FileOkayCount</span> = <span class="n">0</span><span class="sc">;</span>
342 329 <span class="i">$TotalSize</span> = <span class="n">0</span><span class="sc">;</span>
343 330
344 331 <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#FingerprintsFilesList</span><span class="s">)</span> <span class="s">{</span>
345 332 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsFilesList</span>[<span class="i">$Index</span>]<span class="s">)</span> <span class="s">{</span>
346 333 <span class="i">$FileOkayCount</span>++<span class="sc">;</span>
347 334 <span class="i">$TotalSize</span> += <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$Index</span>]<span class="sc">;</span>
348 335 <span class="s">}</span>
349 336 <span class="s">}</span>
350 337 <span class="k">if</span> <span class="s">(</span><span class="i">$FileOkayCount</span> &gt; <span class="n">1</span><span class="s">)</span> <span class="s">{</span>
351 338 <span class="k">print</span> <span class="q">&quot;\nTotal size of $FileOkayCount files: &quot;</span><span class="cm">,</span> <span class="i">FormatFileSize</span><span class="s">(</span><span class="i">$TotalSize</span><span class="s">)</span><span class="cm">,</span> <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
352 339 <span class="s">}</span>
353 340 <span class="s">}</span>
354 341
355 342 <span class="c"># Retrieve information about fingerprints files...</span>
356 343 <span class="c">#</span>
357 <a name="RetrieveFingerprintsFilesInfo-"></a> 344 <span class="k">sub </span><span class="m">RetrieveFingerprintsFilesInfo</span> <span class="s">{</span>
358 345 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="i">$Index</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileType</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="cm">,</span> <span class="i">$ModifiedTimeString</span><span class="cm">,</span> <span class="i">$ModifiedDateString</span><span class="cm">,</span> <span class="i">%FingerprintsFileIOParameters</span><span class="s">)</span><span class="sc">;</span>
359 346
360 347 <span class="i">%FingerprintsFilesInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
361 348 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
362 349 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
363 350 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
364 351 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
365 352 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">InDelim</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
366 353
367 354 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
368 355
369 356 <span class="j">FILELIST:</span> <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#FingerprintsFilesList</span><span class="s">)</span> <span class="s">{</span>
370 357 <span class="i">$FingerprintsFile</span> = <span class="i">$FingerprintsFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span>
371 358
372 359 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span>
373 360 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}[<span class="i">$Index</span>] = <span class="q">&#39;&#39;</span><span class="sc">;</span>
374 361 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span>
375 362 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}[<span class="i">$Index</span>] = <span class="q">&#39;&#39;</span><span class="sc">;</span>
376 363 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>] = <span class="q">&quot;&quot;</span><span class="sc">;</span>
377 364
378 365 <span class="i">%</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}[<span class="i">$Index</span>]} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
379 366
380 367 <span class="i">$FingerprintsFile</span> = <span class="i">$FingerprintsFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span>
381 368 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$FingerprintsFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
382 369 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $FingerprintsFile: It doesn&#39;t exist\n&quot;</span><span class="sc">;</span>
383 370 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
384 371 <span class="s">}</span>
385 372
386 373 <span class="i">$FileType</span> = <span class="i">Fingerprints::FingerprintsFileUtil::GetFingerprintsFileType</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span>
387 374 <span class="k">if</span> <span class="s">(</span><span class="i">IsEmpty</span><span class="s">(</span><span class="i">$FileType</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
388 375 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $FingerprintsFile: It&#39;s not a fingerprints file\n&quot;</span><span class="sc">;</span>
389 376 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
390 377 <span class="s">}</span>
391 378
392 379 <span class="i">$FileDir</span> = <span class="q">&quot;&quot;</span><span class="sc">;</span> <span class="i">$FileName</span> = <span class="q">&quot;&quot;</span><span class="sc">;</span> <span class="i">$FileExt</span> = <span class="q">&quot;&quot;</span><span class="sc">;</span>
393 380 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span>
394 381
395 382 <span class="i">$InDelim</span> = <span class="s">(</span><span class="i">$FileExt</span> =~ <span class="q">/^tsv$/i</span><span class="s">)</span> ? <span class="q">&#39;Tab&#39;</span> <span class="co">:</span> <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>}<span class="sc">;</span>
396 383
397 384 <span class="c"># Setup FingerprintsFileIO parameters...</span>
398 385 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
399 386 <span class="j">FILEIOPARAMETERS:</span> <span class="s">{</span>
400 387 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span>
401 388 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="q">&#39;Name&#39;</span> <span class="cm">=&gt;</span> <span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="q">&#39;Mode&#39;</span> <span class="cm">=&gt;</span> <span class="q">&#39;Read&#39;</span><span class="cm">,</span> <span class="q">&#39;ValidateData&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="cm">,</span> <span class="q">&#39;DetailLevel&#39;</span> <span class="cm">=&gt;</span> <span class="n">1</span><span class="cm">,</span> <span class="q">&#39;FingerprintsFieldLabel&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span>
402 389 <span class="k">last</span> <span class="j">FILEIOPARAMETERS</span><span class="sc">;</span>
403 390 <span class="s">}</span>
404 391 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^FP$/i</span><span class="s">)</span> <span class="s">{</span>
405 392 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="q">&#39;Name&#39;</span> <span class="cm">=&gt;</span> <span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="q">&#39;Mode&#39;</span> <span class="cm">=&gt;</span> <span class="q">&#39;Read&#39;</span><span class="cm">,</span> <span class="q">&#39;ValidateData&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="cm">,</span> <span class="q">&#39;DetailLevel&#39;</span> <span class="cm">=&gt;</span> <span class="n">1</span><span class="s">)</span><span class="sc">;</span>
406 393 <span class="k">last</span> <span class="j">FILEIOPARAMETERS</span><span class="sc">;</span>
407 394 <span class="s">}</span>
408 395 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^Text$/i</span><span class="s">)</span> <span class="s">{</span>
409 396 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="q">&#39;Name&#39;</span> <span class="cm">=&gt;</span> <span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="q">&#39;Mode&#39;</span> <span class="cm">=&gt;</span> <span class="q">&#39;Read&#39;</span><span class="cm">,</span> <span class="q">&#39;ValidateData&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="cm">,</span> <span class="q">&#39;DetailLevel&#39;</span> <span class="cm">=&gt;</span> <span class="n">1</span><span class="cm">,</span> <span class="q">&#39;FingerprintsCol&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsCol</span>}<span class="cm">,</span> <span class="q">&#39;ColMode&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">ColMode</span>}<span class="cm">,</span> <span class="q">&#39;InDelim&#39;</span> <span class="cm">=&gt;</span> <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>}<span class="s">)</span><span class="sc">;</span>
410 397 <span class="k">last</span> <span class="j">FILEIOPARAMETERS</span><span class="sc">;</span>
411 398 <span class="s">}</span>
412 399 <span class="k">warn</span> <span class="q">&quot;Warning: File type for fingerprints file, $FingerprintsFile, is not valid. Supported file types: SD, FP or Text\n&quot;</span><span class="sc">;</span>
413 400 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
414 401 <span class="s">}</span>
415 402
416 403 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">1</span><span class="sc">;</span>
417 404 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}[<span class="i">$Index</span>] = <span class="i">$FileType</span><span class="sc">;</span>
418 405
419 406 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$Index</span>] = <span class="i">FileSize</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span>
420 407 <span class="s">(</span><span class="i">$ModifiedTimeString</span><span class="cm">,</span> <span class="i">$ModifiedDateString</span><span class="s">)</span> = <span class="i">FormattedFileModificationTimeAndDate</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span>
421 408 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}[<span class="i">$Index</span>] = <span class="q">&quot;$ModifiedTimeString; $ModifiedDateString&quot;</span><span class="sc">;</span>
422 409
423 410 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>] = <span class="i">$InDelim</span><span class="sc">;</span>
424 411
425 412 <span class="i">%</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}[<span class="i">$Index</span>]} = <span class="i">%FingerprintsFileIOParameters</span><span class="sc">;</span>
426 413 <span class="s">}</span>
427 414 <span class="s">}</span>
428 415
429 416 <span class="c"># Process option values...</span>
430 <a name="ProcessOptions-"></a> 417 <span class="k">sub </span><span class="m">ProcessOptions</span> <span class="s">{</span>
431 418 <span class="i">%OptionsInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
432 419
433 420 <span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">averagebitdensity</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
434 421 <span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">bitdensity</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
435 422
436 423 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>}<span class="s">)</span> <span class="s">{</span>
437 424 <span class="c"># List bit density as well...</span>
438 425 <span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} = <span class="n">1</span><span class="sc">;</span>
439 426 <span class="s">}</span>
440 427
441 428 <span class="c"># By default, count number of rows containing fingerprints data...</span>
442 429 <span class="i">$OptionsInfo</span>{<span class="w">CountFingerprints</span>} = <span class="n">1</span><span class="sc">;</span>
443 430 <span class="i">$OptionsInfo</span>{<span class="w">CountEmptyFingerprints</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">empty</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
444 431
445 432 <span class="i">$OptionsInfo</span>{<span class="w">ColMode</span>} = <span class="i">$Options</span>{<span class="w">colmode</span>}<span class="sc">;</span>
446 433 <span class="k">if</span> <span class="s">(</span><span class="i">IsNotEmpty</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">fingerprintscol</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
447 434 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">colmode</span>} =~ <span class="q">/^ColNum$/i</span><span class="s">)</span> <span class="s">{</span>
448 435 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">fingerprintscol</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
449 436 <span class="k">die</span> <span class="q">&quot;Error: Column value, $Options{fingerprintscol}, specified using \&quot;--FingerprintsCol\&quot; is not valid: Allowed integer values: &gt; 0.\n&quot;</span><span class="sc">;</span>
450 437 <span class="s">}</span>
451 438 <span class="s">}</span>
452 439 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsCol</span>} = <span class="i">$Options</span>{<span class="w">fingerprintscol</span>}<span class="sc">;</span>
453 440 <span class="s">}</span>
454 441 <span class="k">else</span> <span class="s">{</span>
455 442 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsCol</span>} = <span class="q">&#39;AutoDetect&#39;</span><span class="sc">;</span>
456 443 <span class="s">}</span>
457 444
458 445 <span class="k">if</span> <span class="s">(</span><span class="i">IsNotEmpty</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">fingerprintsfield</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
459 446 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsFieldLabel</span>} = <span class="i">$Options</span>{<span class="w">fingerprintsfield</span>}<span class="sc">;</span>
460 447 <span class="s">}</span>
461 448 <span class="k">else</span> <span class="s">{</span>
462 449 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsFieldLabel</span>} = <span class="q">&#39;AutoDetect&#39;</span><span class="sc">;</span>
463 450 <span class="s">}</span>
464 451
465 452 <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">datacheck</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
466 453 <span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} = <span class="i">$Options</span>{<span class="w">detail</span>}<span class="sc">;</span>
467 454
468 455 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsType</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintstype</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
469 456 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDescription</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsdescription</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
470 457 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsSize</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintssize</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
471 458
472 459 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitStringFormat</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsbitstringformat</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
473 460 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitOrder</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsbitorder</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
474 461
475 462 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesType</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsvectorvaluestype</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
476 463 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesFormat</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsvectorvaluesformat</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
477 464
478 465 <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>} = <span class="i">$Options</span>{<span class="w">indelim</span>}<span class="sc">;</span>
479 466
480 467 <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">numofonbits</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
481 468 <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">numofnonzerovalues</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span>
482 469
483 470 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDataEntryInfo</span>} = <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsType</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDescription</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsSize</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitStringFormat</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitOrder</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesType</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesFormat</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
484 471
485 472 <span class="s">}</span>
486 473
487 474 <span class="c"># Setup script usage and retrieve command line arguments specified using various options...</span>
488 <a name="SetupScriptUsage-"></a> 475 <span class="k">sub </span><span class="m">SetupScriptUsage</span> <span class="s">{</span>
489 476
490 477 <span class="c"># Retrieve all the options...</span>
491 478 <span class="i">%Options</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
492 479
493 480 <span class="i">$Options</span>{<span class="w">colmode</span>} = <span class="q">&#39;colnum&#39;</span><span class="sc">;</span>
494 481 <span class="i">$Options</span>{<span class="w">detail</span>} = <span class="n">1</span><span class="sc">;</span>
495 482 <span class="i">$Options</span>{<span class="w">indelim</span>} = <span class="q">&#39;comma&#39;</span><span class="sc">;</span>
496 483
497 484 <span class="k">if</span> <span class="s">(</span>!<span class="i">GetOptions</span><span class="s">(</span>\<span class="i">%Options</span><span class="cm">,</span> <span class="q">&quot;all|a&quot;</span><span class="cm">,</span> <span class="q">&quot;averagebitdensity&quot;</span><span class="cm">,</span> <span class="q">&quot;bitdensity&quot;</span><span class="cm">,</span> <span class="q">&quot;count&quot;</span><span class="cm">,</span> <span class="q">&quot;colmode|c=s&quot;</span><span class="cm">,</span> <span class="q">&quot;detail|d=i&quot;</span><span class="cm">,</span> <span class="q">&quot;datacheck&quot;</span><span class="cm">,</span> <span class="q">&quot;empty|e&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintsfield=s&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintscol=s&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintstype&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintsdescription&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintssize&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintsbitstringformat&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintsbitorder&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintsvectorvaluestype&quot;</span><span class="cm">,</span> <span class="q">&quot;fingerprintsvectorvaluesformat&quot;</span><span class="cm">,</span> <span class="q">&quot;help|h&quot;</span><span class="cm">,</span> <span class="q">&quot;indelim=s&quot;</span><span class="cm">,</span> <span class="q">&quot;numofonbits&quot;</span><span class="cm">,</span> <span class="q">&quot;numofnonzerovalues&quot;</span><span class="cm">,</span> <span class="q">&quot;workingdir|w=s&quot;</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
498 485 <span class="k">die</span> <span class="q">&quot;\nTo get a list of valid options and their values, use \&quot;$ScriptName -h\&quot; or\n\&quot;perl -S $ScriptName -h\&quot; command and try again...\n&quot;</span><span class="sc">;</span>
499 486 <span class="s">}</span>
500 487 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span>
501 488 <span class="k">if</span> <span class="s">(</span>! <span class="k">-d</span> <span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span>
502 489 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{workingdir}, for option \&quot;-w --workingdir\&quot; is not a directory name.\n&quot;</span><span class="sc">;</span>
503 490 <span class="s">}</span>
504 491 <span class="k">chdir</span> <span class="i">$Options</span>{<span class="w">workingdir</span>} <span class="k">or</span> <span class="k">die</span> <span class="q">&quot;Error: Couldn&#39;t chdir $Options{workingdir}: $! \n&quot;</span><span class="sc">;</span>
505 492 <span class="s">}</span>
506 493 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">colmode</span>} !~ <span class="q">/^(ColNum|ColLabel)$/i</span><span class="s">)</span> <span class="s">{</span>
507 494 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{colmode}, for option \&quot;-c, --ColMode\&quot; is not valid. Allowed values: ColNum, or ColLabel\n&quot;</span><span class="sc">;</span>
508 495 <span class="s">}</span>
509 496 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">detail</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
510 497 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{detail}, for option \&quot;-d, --detail\&quot; is not valid. Allowed values: &gt; 0 \n&quot;</span><span class="sc">;</span>
511 498 <span class="s">}</span>
512 499 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">indelim</span>} !~ <span class="q">/^(comma|semicolon)$/i</span><span class="s">)</span> <span class="s">{</span>
513 500 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{indelim}, for option \&quot;--InDelim\&quot; is not valid. Allowed values: comma, or semicolon\n&quot;</span><span class="sc">;</span>
514 501 <span class="s">}</span>
515 502 <span class="s">}</span>
516 503
517 <a name="EOF-"></a></pre>
518 <p>&nbsp;</p>
519 <br />
520 <center>
521 <img src="../../../images/h2o2.png">
522 </center>
523 </body>
524 </html>