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comparison docs/scripts/txt/TextFilesToSDFiles.txt @ 0:4816e4a8ae95 draft default tip
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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 09:23:18 -0500 |
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| -1:000000000000 | 0:4816e4a8ae95 |
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| 1 NAME | |
| 2 TextFilesToSDFiles.pl - Generate SD files from CSV or TSV TextFile(s) | |
| 3 | |
| 4 SYNOPSIS | |
| 5 TextFilesToSDFiles.pl TextFile(s)... | |
| 6 | |
| 7 TextFilesToSDFiles.pl [-h, --help] [--indelim comma | semicolon] [-l, | |
| 8 --label yes | no] [-o, --overwrite] [-r, --root rootname] [-w, | |
| 9 --workingdir dirname] TextFile(s)... | |
| 10 | |
| 11 DESCRIPTION | |
| 12 Generate SD files from CSV or TSV *TextFile(s)*. The new SD files | |
| 13 contain no structure data as indicated by empty structure data block; | |
| 14 Data fields and values in SD files are generated using *TextFile(s)* | |
| 15 column labels and corresponding data values. | |
| 16 | |
| 17 Multiple *TextFile(s)* names are separated by space. The valid file | |
| 18 extensions are *.csv* and *.tsv* for comma/semicolon and tab delimited | |
| 19 text files respectively. All other file names are ignored. All the text | |
| 20 files in a current directory can be specified by **.csv*, **.tsv*, or | |
| 21 the current directory name. The --indelim option determines the format | |
| 22 of *TextFile(s)*. Any file which doesn't correspond to the format | |
| 23 indicated by --indelim option is ignored. | |
| 24 | |
| 25 OPTIONS | |
| 26 -h, --help | |
| 27 Print this help message. | |
| 28 | |
| 29 --indelim *comma | semicolon* | |
| 30 Input delimiter for CSV *TextFile(s)*. Possible values: *comma or | |
| 31 semicolon*. Default value: *comma*. For TSV files, this option is | |
| 32 ignored and *tab* is used as a delimiter. | |
| 33 | |
| 34 -l, --label *yes | no* | |
| 35 First line contains column labels. Possible values: *yes or no*. | |
| 36 Default value: *yes*. Column labels are used to create SD data field | |
| 37 labels; otherwise, data field labels look like | |
| 38 Column<colnumber>Data. | |
| 39 | |
| 40 -o, --overwrite | |
| 41 Overwrite existing files. | |
| 42 | |
| 43 -r, --root *rootname* | |
| 44 New SD file names are generated using the root: <Root>.sdf. Default | |
| 45 new file names: <TextFileName>WithNoStrData.sdf. This option is | |
| 46 ignored for multiple input files. | |
| 47 | |
| 48 -w, --workingdir *dirname* | |
| 49 Location of working directory. Default: current directory. | |
| 50 | |
| 51 EXAMPLES | |
| 52 To generate NewSample1.sdf file from Sample1.csv file, type: | |
| 53 | |
| 54 % TextFilesToSDFiles.pl -o -r NewSample1 Sample1.csv | |
| 55 | |
| 56 To generate NewSample1.sdf file from Sample1.tsv file which doesn't | |
| 57 contain column labels line, type: | |
| 58 | |
| 59 % TextFilesToSDFiles.pl --label no -o -r NewSample1 Sample1.tsv | |
| 60 | |
| 61 AUTHOR | |
| 62 Manish Sud <msud@san.rr.com> | |
| 63 | |
| 64 SEE ALSO | |
| 65 JoinTextFiles.pl, MergeTextFiles.pl, ModifySDFilesDataFields.pl, | |
| 66 ModifyTextFilesFormat.pl | |
| 67 | |
| 68 COPYRIGHT | |
| 69 Copyright (C) 2015 Manish Sud. All rights reserved. | |
| 70 | |
| 71 This file is part of MayaChemTools. | |
| 72 | |
| 73 MayaChemTools is free software; you can redistribute it and/or modify it | |
| 74 under the terms of the GNU Lesser General Public License as published by | |
| 75 the Free Software Foundation; either version 3 of the License, or (at | |
| 76 your option) any later version. | |
| 77 |