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comparison docs/modules/txt/SLogPAndSMRDescriptors.txt @ 0:4816e4a8ae95 draft default tip
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| author | deepakjadmin |
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| date | Wed, 20 Jan 2016 09:23:18 -0500 |
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| -1:000000000000 | 0:4816e4a8ae95 |
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| 1 NAME | |
| 2 SLogPAndSMRDescriptors | |
| 3 | |
| 4 SYNOPSIS | |
| 5 use MolecularDescriptors::SLogPAndSMRDescriptors; | |
| 6 | |
| 7 use MolecularDescriptors::SLogPAndSMRDescriptors qw(:all); | |
| 8 | |
| 9 DESCRIPTION | |
| 10 SLogPAndSMRDescriptors class provides the following methods: | |
| 11 | |
| 12 new, GenerateDescriptors, GetDescriptorNames, | |
| 13 StringifySLogPAndSMRDescriptors | |
| 14 | |
| 15 SLogPAndSMRDescriptors is derived from MolecularDescriptors class which | |
| 16 in turn is derived from ObjectProperty base class that provides methods | |
| 17 not explicitly defined in SLogPAndSMRDescriptors, MolecularDescriptors | |
| 18 or ObjectProperty classes using Perl's AUTOLOAD functionality. These | |
| 19 methods are generated on-the-fly for a specified object property: | |
| 20 | |
| 21 Set<PropertyName>(<PropertyValue>); | |
| 22 $PropertyValue = Get<PropertyName>(); | |
| 23 Delete<PropertyName>(); | |
| 24 | |
| 25 After SLogP atom types [ Ref 89 ] has been assigned to all atoms in a | |
| 26 molecule using AtomTypes::SLogPAndSMR.pm module, SLogP (calculated logP) | |
| 27 and SMR (calculated molar refractivity) values are calculated by adding | |
| 28 up LogP and MR contributions of each atom type. | |
| 29 | |
| 30 METHODS | |
| 31 new | |
| 32 $NewSLogPAndSMRDescriptors = new MolecularDescriptors:: | |
| 33 SLogPAndSMRDescriptors( | |
| 34 %NamesAndValues); | |
| 35 | |
| 36 Using specified *SLogPAndSMRDescriptors* property names and values | |
| 37 hash, new method creates a new object and returns a reference to | |
| 38 newly created SLogPAndSMRDescriptors object. By default, the | |
| 39 following properties are initialized: | |
| 40 | |
| 41 Molecule = '' | |
| 42 Type = 'SLogPAndSMR' | |
| 43 @DescriptorNames = ('SLogP', 'SMR') | |
| 44 @DescriptorValues = ('None', 'None') | |
| 45 | |
| 46 Examples: | |
| 47 | |
| 48 $SLogPAndSMRDescriptors = new MolecularDescriptors:: | |
| 49 SLogPAndSMRDescriptors(); | |
| 50 | |
| 51 $SLogPAndSMRDescriptors->SetMolecule($Molecule); | |
| 52 $SLogPAndSMRDescriptors->GenerateDescriptors(); | |
| 53 print "SLogPAndSMRDescriptors: $SLogPAndSMRDescriptors\n"; | |
| 54 | |
| 55 GenerateDescriptors | |
| 56 $SLogPAndSMRDescriptors->GenerateDescriptors(); | |
| 57 | |
| 58 Calculate SLogP and SMR values for a molecule and returns | |
| 59 *SLogPAndSMRDescriptors*. | |
| 60 | |
| 61 GetDescriptorNames | |
| 62 @DescriptorNames = $SLogPAndSMRDescriptors->GetDescriptorNames(); | |
| 63 @DescriptorNames = MolecularDescriptors::SLogPAndSMRDescriptors:: | |
| 64 GetDescriptorNames(); | |
| 65 | |
| 66 Returns all available descriptor names as an array. | |
| 67 | |
| 68 StringifySLogPAndSMRDescriptors | |
| 69 $String = $SLogPAndSMRDescriptors->StringifySLogPAndSMRDescriptors(); | |
| 70 | |
| 71 Returns a string containing information about | |
| 72 *SLogPAndSMRDescriptors* object. | |
| 73 | |
| 74 AUTHOR | |
| 75 Manish Sud <msud@san.rr.com> | |
| 76 | |
| 77 SEE ALSO | |
| 78 MolecularDescriptors.pm, MolecularDescriptorsGenerator.pm | |
| 79 | |
| 80 COPYRIGHT | |
| 81 Copyright (C) 2015 Manish Sud. All rights reserved. | |
| 82 | |
| 83 This file is part of MayaChemTools. | |
| 84 | |
| 85 MayaChemTools is free software; you can redistribute it and/or modify it | |
| 86 under the terms of the GNU Lesser General Public License as published by | |
| 87 the Free Software Foundation; either version 3 of the License, or (at | |
| 88 your option) any later version. | |
| 89 |
