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comparison docs/modules/txt/FingerprintsStringUtil.txt @ 0:4816e4a8ae95 draft default tip
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| author | deepakjadmin |
|---|---|
| date | Wed, 20 Jan 2016 09:23:18 -0500 |
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| -1:000000000000 | 0:4816e4a8ae95 |
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| 1 NAME | |
| 2 FingerprintsStringUtil | |
| 3 | |
| 4 SYNOPSIS | |
| 5 use Fingerprints::FingerprintsStringUtil; | |
| 6 | |
| 7 use Fingerprints::FingerprintsStringUtil qw(:all); | |
| 8 | |
| 9 DESCRIPTION | |
| 10 FingerprintsStringUtil module provides the following functions: | |
| 11 | |
| 12 AreFingerprintsStringValuesValid, GenerateFingerprintsBitVectorString, | |
| 13 GenerateFingerprintsString, GenerateFingerprintsVectorString, | |
| 14 GetDefaultBitStringFormat, GetDefaultBitsOrder, | |
| 15 GetDefaultVectorStringFormat, GetFingeprintsStringDelimiter, | |
| 16 GetFingerprintsStringTypeAndDescription, GetFingerprintsStringValues, | |
| 17 ParseFingerprintsBitVectorString, ParseFingerprintsString, | |
| 18 ParseFingerprintsVectorString | |
| 19 | |
| 20 The current release of MayaChemTools supports the following types of | |
| 21 fingerprint bit-vector and vector strings: | |
| 22 | |
| 23 FingerprintsVector;AtomNeighborhoods:AtomicInvariantsAtomTypes:MinRadi | |
| 24 us0:MaxRadius2;41;AlphaNumericalValues;ValuesString;NR0-C.X1.BO1.H3-AT | |
| 25 C1:NR1-C.X3.BO3.H1-ATC1:NR2-C.X1.BO1.H3-ATC1:NR2-C.X3.BO4-ATC1 NR0-C.X | |
| 26 1.BO1.H3-ATC1:NR1-C.X3.BO3.H1-ATC1:NR2-C.X1.BO1.H3-ATC1:NR2-C.X3.BO4-A | |
| 27 TC1 NR0-C.X2.BO2.H2-ATC1:NR1-C.X2.BO2.H2-ATC1:NR1-C.X3.BO3.H1-ATC1:NR2 | |
| 28 -C.X2.BO2.H2-ATC1:NR2-N.X3.BO3-ATC1:NR2-O.X1.BO1.H1-ATC1 NR0-C.X2.B... | |
| 29 | |
| 30 FingerprintsVector;AtomTypesCount:AtomicInvariantsAtomTypes:ArbitraryS | |
| 31 ize;10;NumericalValues;IDsAndValuesString;C.X1.BO1.H3 C.X2.BO2.H2 C.X2 | |
| 32 .BO3.H1 C.X3.BO3.H1 C.X3.BO4 F.X1.BO1 N.X2.BO2.H1 N.X3.BO3 O.X1.BO1.H1 | |
| 33 O.X1.BO2;2 4 14 3 10 1 1 1 3 2 | |
| 34 | |
| 35 FingerprintsVector;AtomTypesCount:SLogPAtomTypes:ArbitrarySize;16;Nume | |
| 36 ricalValues;IDsAndValuesString;C1 C10 C11 C14 C18 C20 C21 C22 C5 CS F | |
| 37 N11 N4 O10 O2 O9;5 1 1 1 14 4 2 1 2 2 1 1 1 1 3 1 | |
| 38 | |
| 39 FingerprintsVector;AtomTypesCount:SLogPAtomTypes:FixedSize;67;OrderedN | |
| 40 umericalValues;IDsAndValuesString;C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C | |
| 41 12 C13 C14 C15 C16 C17 C18 C19 C20 C21 C22 C23 C24 C25 C26 C27 CS N1 N | |
| 42 2 N3 N4 N5 N6 N7 N8 N9 N10 N11 N12 N13 N14 NS O1 O2 O3 O4 O5 O6 O7 O8 | |
| 43 O9 O10 O11 O12 OS F Cl Br I Hal P S1 S2 S3 Me1 Me2;5 0 0 0 2 0 0 0 0 1 | |
| 44 1 0 0 1 0 0 0 14 0 4 2 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0... | |
| 45 | |
| 46 FingerprintsVector;EStateIndicies:ArbitrarySize;11;NumericalValues;IDs | |
| 47 AndValuesString;SaaCH SaasC SaasN SdO SdssC SsCH3 SsF SsOH SssCH2 SssN | |
| 48 H SsssCH;24.778 4.387 1.993 25.023 -1.435 3.975 14.006 29.759 -0.073 3 | |
| 49 .024 -2.270 | |
| 50 | |
| 51 FingerprintsVector;EStateIndicies:FixedSize;87;OrderedNumericalValues; | |
| 52 ValuesString;0 0 0 0 0 0 0 3.975 0 -0.073 0 0 24.778 -2.270 0 0 -1.435 | |
| 53 4.387 0 0 0 0 0 0 3.024 0 0 0 0 0 0 0 1.993 0 29.759 25.023 0 0 0 0 1 | |
| 54 4.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 56 | |
| 57 FingerprintsVector;ExtendedConnectivity:AtomicInvariantsAtomTypes:Radi | |
| 58 us2;60;AlphaNumericalValues;ValuesString;73555770 333564680 352413391 | |
| 59 666191900 1001270906 1371674323 1481469939 1977749791 2006158649 21414 | |
| 60 08799 49532520 64643108 79385615 96062769 273726379 564565671 85514103 | |
| 61 5 906706094 988546669 1018231313 1032696425 1197507444 1331250018 1338 | |
| 62 532734 1455473691 1607485225 1609687129 1631614296 1670251330 17303... | |
| 63 | |
| 64 FingerprintsVector;ExtendedConnectivityCount:AtomicInvariantsAtomTypes | |
| 65 :Radius2;60;NumericalValues;IDsAndValuesString;73555770 333564680 3524 | |
| 66 13391 666191900 1001270906 1371674323 1481469939 1977749791 2006158649 | |
| 67 2141408799 49532520 64643108 79385615 96062769 273726379 564565671...; | |
| 68 3 2 1 1 14 1 2 10 4 3 1 1 1 1 2 1 2 1 1 1 2 3 1 1 2 1 3 3 8 2 2 2 6 2 | |
| 69 1 2 1 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 | |
| 70 | |
| 71 FingerprintsBitVector;ExtendedConnectivityBits:AtomicInvariantsAtomTyp | |
| 72 es:Radius2;1024;BinaryString;Ascending;0000000000000000000000000000100 | |
| 73 0000000001010000000110000011000000000000100000000000000000000000100001 | |
| 74 1000000110000000000000000000000000010011000000000000000000000000010000 | |
| 75 0000000000000000000000000010000000000000000001000000000000000000000000 | |
| 76 0000000000010000100001000000000000101000000000000000100000000000000... | |
| 77 | |
| 78 FingerprintsVector;ExtendedConnectivity:FunctionalClassAtomTypes:Radiu | |
| 79 s2;57;AlphaNumericalValues;ValuesString;24769214 508787397 850393286 8 | |
| 80 62102353 981185303 1231636850 1649386610 1941540674 263599683 32920567 | |
| 81 1 571109041 639579325 683993318 723853089 810600886 885767127 90326012 | |
| 82 7 958841485 981022393 1126908698 1152248391 1317567065 1421489994 1455 | |
| 83 632544 1557272891 1826413669 1983319256 2015750777 2029559552 20404... | |
| 84 | |
| 85 FingerprintsVector;ExtendedConnectivity:EStateAtomTypes:Radius2;62;Alp | |
| 86 haNumericalValues;ValuesString;25189973 528584866 662581668 671034184 | |
| 87 926543080 1347067490 1738510057 1759600920 2034425745 2097234755 21450 | |
| 88 44754 96779665 180364292 341712110 345278822 386540408 387387308 50430 | |
| 89 1706 617094135 771528807 957666640 997798220 1158349170 1291258082 134 | |
| 90 1138533 1395329837 1420277211 1479584608 1486476397 1487556246 1566... | |
| 91 | |
| 92 FingerprintsBitVector;MACCSKeyBits;166;BinaryString;Ascending;00000000 | |
| 93 0000000000000000000000000000000001001000010010000000010010000000011100 | |
| 94 0100101010111100011011000100110110000011011110100110111111111111011111 | |
| 95 11111111111110111000 | |
| 96 | |
| 97 FingerprintsBitVector;MACCSKeyBits;322;BinaryString;Ascending;11101011 | |
| 98 1110011111100101111111000111101100110000000000000011100010000000000000 | |
| 99 0000000000000000000000000000000000000000000000101000000000000000000000 | |
| 100 0000000000000000000000000000000000000000000000000000000000000000000000 | |
| 101 0000000000000000000000000000000000000011000000000000000000000000000000 | |
| 102 0000000000000000000000000000000000000000 | |
| 103 | |
| 104 FingerprintsVector;MACCSKeyCount;166;OrderedNumericalValues;ValuesStri | |
| 105 ng;0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 106 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 4 0 0 2 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 | |
| 107 0 0 0 0 1 1 8 0 0 0 1 0 0 1 0 1 0 1 0 3 1 3 1 0 0 0 1 2 0 11 1 0 0 0 | |
| 108 5 0 0 1 2 0 1 1 0 0 0 0 0 1 1 0 1 1 1 1 0 4 0 0 1 1 0 4 6 1 1 1 2 1 1 | |
| 109 3 5 2 2 0 5 3 5 1 1 2 5 1 2 1 2 4 8 3 5 5 2 2 0 3 5 4 1 | |
| 110 | |
| 111 FingerprintsVector;MACCSKeyCount;322;OrderedNumericalValues;ValuesStri | |
| 112 ng;14 8 2 0 2 0 4 4 2 1 4 0 0 2 5 10 5 2 1 0 0 2 0 5 13 3 28 5 5 3 0 0 | |
| 113 0 4 2 1 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 5 3 0 0 0 1 0 | |
| 114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 2 0 0 0 0 0 0 0 0 0 | |
| 116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ... | |
| 117 | |
| 118 FingerprintsBitVector;PathLengthBits:AtomicInvariantsAtomTypes:MinLeng | |
| 119 th1:MaxLength8;1024;BinaryString;Ascending;001000010011010101011000110 | |
| 120 0100010101011000101001011100110001000010001001101000001001001001001000 | |
| 121 0010110100000111001001000001001010100100100000000011000000101001011100 | |
| 122 0010000001000101010100000100111100110111011011011000000010110111001101 | |
| 123 0101100011000000010001000011000010100011101100001000001000100000000... | |
| 124 | |
| 125 FingerprintsVector;PathLengthCount:AtomicInvariantsAtomTypes:MinLength | |
| 126 1:MaxLength8;432;NumericalValues;IDsAndValuesPairsString;C.X1.BO1.H3 2 | |
| 127 C.X2.BO2.H2 4 C.X2.BO3.H1 14 C.X3.BO3.H1 3 C.X3.BO4 10 F.X1.BO1 1 N.X | |
| 128 2.BO2.H1 1 N.X3.BO3 1 O.X1.BO1.H1 3 O.X1.BO2 2 C.X1.BO1.H3C.X3.BO3.H1 | |
| 129 2 C.X2.BO2.H2C.X2.BO2.H2 1 C.X2.BO2.H2C.X3.BO3.H1 4 C.X2.BO2.H2C.X3.BO | |
| 130 4 1 C.X2.BO2.H2N.X3.BO3 1 C.X2.BO3.H1:C.X2.BO3.H1 10 C.X2.BO3.H1:C.... | |
| 131 | |
| 132 FingerprintsVector;PathLengthCount:MMFF94AtomTypes:MinLength1:MaxLengt | |
| 133 h8;463;NumericalValues;IDsAndValuesPairsString;C5A 2 C5B 2 C=ON 1 CB 1 | |
| 134 8 COO 1 CR 9 F 1 N5 1 NC=O 1 O=CN 1 O=CO 1 OC=O 1 OR 2 C5A:C5B 2 C5A:N | |
| 135 5 2 C5ACB 1 C5ACR 1 C5B:C5B 1 C5BC=ON 1 C5BCB 1 C=ON=O=CN 1 C=ONNC=O 1 | |
| 136 CB:CB 18 CBF 1 CBNC=O 1 COO=O=CO 1 COOCR 1 COOOC=O 1 CRCR 7 CRN5 1 CR | |
| 137 OR 2 C5A:C5B:C5B 2 C5A:C5BC=ON 1 C5A:C5BCB 1 C5A:N5:C5A 1 C5A:N5CR ... | |
| 138 | |
| 139 FingerprintsVector;TopologicalAtomPairs:AtomicInvariantsAtomTypes:MinD | |
| 140 istance1:MaxDistance10;223;NumericalValues;IDsAndValuesString;C.X1.BO1 | |
| 141 .H3-D1-C.X3.BO3.H1 C.X2.BO2.H2-D1-C.X2.BO2.H2 C.X2.BO2.H2-D1-C.X3.BO3. | |
| 142 H1 C.X2.BO2.H2-D1-C.X3.BO4 C.X2.BO2.H2-D1-N.X3.BO3 C.X2.BO3.H1-D1-...; | |
| 143 2 1 4 1 1 10 8 1 2 6 1 2 2 1 2 1 2 2 1 2 1 5 1 10 12 2 2 1 2 1 9 1 3 1 | |
| 144 1 1 2 2 1 3 6 1 6 14 2 2 2 3 1 3 1 8 2 2 1 3 2 6 1 2 2 5 1 3 1 23 1... | |
| 145 | |
| 146 FingerprintsVector;TopologicalAtomPairs:FunctionalClassAtomTypes:MinDi | |
| 147 stance1:MaxDistance10;144;NumericalValues;IDsAndValuesString;Ar-D1-Ar | |
| 148 Ar-D1-Ar.HBA Ar-D1-HBD Ar-D1-Hal Ar-D1-None Ar.HBA-D1-None HBA-D1-NI H | |
| 149 BA-D1-None HBA.HBD-D1-NI HBA.HBD-D1-None HBD-D1-None NI-D1-None No...; | |
| 150 23 2 1 1 2 1 1 1 1 2 1 1 7 28 3 1 3 2 8 2 1 1 1 5 1 5 24 3 3 4 2 13 4 | |
| 151 1 1 4 1 5 22 4 4 3 1 19 1 1 1 1 1 2 2 3 1 1 8 25 4 5 2 3 1 26 1 4 1 ... | |
| 152 | |
| 153 FingerprintsVector;TopologicalAtomTorsions:AtomicInvariantsAtomTypes;3 | |
| 154 3;NumericalValues;IDsAndValuesString;C.X1.BO1.H3-C.X3.BO3.H1-C.X3.BO4- | |
| 155 C.X3.BO4 C.X1.BO1.H3-C.X3.BO3.H1-C.X3.BO4-N.X3.BO3 C.X2.BO2.H2-C.X2.BO | |
| 156 2.H2-C.X3.BO3.H1-C.X2.BO2.H2 C.X2.BO2.H2-C.X2.BO2.H2-C.X3.BO3.H1-O...; | |
| 157 2 2 1 1 2 2 1 1 3 4 4 8 4 2 2 6 2 2 1 2 1 1 2 1 1 2 6 2 4 2 1 3 1 | |
| 158 | |
| 159 FingerprintsVector;TopologicalAtomTorsions:EStateAtomTypes;36;Numerica | |
| 160 lValues;IDsAndValuesString;aaCH-aaCH-aaCH-aaCH aaCH-aaCH-aaCH-aasC aaC | |
| 161 H-aaCH-aasC-aaCH aaCH-aaCH-aasC-aasC aaCH-aaCH-aasC-sF aaCH-aaCH-aasC- | |
| 162 ssNH aaCH-aasC-aasC-aasC aaCH-aasC-aasC-aasN aaCH-aasC-ssNH-dssC a...; | |
| 163 4 4 8 4 2 2 6 2 2 2 4 3 2 1 3 3 2 2 2 1 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 2 | |
| 164 | |
| 165 FingerprintsVector;TopologicalAtomTriplets:AtomicInvariantsAtomTypes:M | |
| 166 inDistance1:MaxDistance10;3096;NumericalValues;IDsAndValuesString;C.X1 | |
| 167 .BO1.H3-D1-C.X1.BO1.H3-D1-C.X3.BO3.H1-D2 C.X1.BO1.H3-D1-C.X2.BO2.H2-D1 | |
| 168 0-C.X3.BO4-D9 C.X1.BO1.H3-D1-C.X2.BO2.H2-D3-N.X3.BO3-D4 C.X1.BO1.H3-D1 | |
| 169 -C.X2.BO2.H2-D4-C.X2.BO2.H2-D5 C.X1.BO1.H3-D1-C.X2.BO2.H2-D6-C.X3....; | |
| 170 1 2 2 2 2 2 2 2 8 8 4 8 4 4 2 2 2 2 4 2 2 2 4 2 2 2 2 1 2 2 4 4 4 2 2 | |
| 171 2 4 4 4 8 4 4 2 4 4 4 2 4 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 8... | |
| 172 | |
| 173 FingerprintsVector;TopologicalAtomTriplets:SYBYLAtomTypes:MinDistance1 | |
| 174 :MaxDistance10;2332;NumericalValues;IDsAndValuesString;C.2-D1-C.2-D9-C | |
| 175 .3-D10 C.2-D1-C.2-D9-C.ar-D10 C.2-D1-C.3-D1-C.3-D2 C.2-D1-C.3-D10-C.3- | |
| 176 D9 C.2-D1-C.3-D2-C.3-D3 C.2-D1-C.3-D2-C.ar-D3 C.2-D1-C.3-D3-C.3-D4 C.2 | |
| 177 -D1-C.3-D3-N.ar-D4 C.2-D1-C.3-D3-O.3-D2 C.2-D1-C.3-D4-C.3-D5 C.2-D1-C. | |
| 178 3-D5-C.3-D6 C.2-D1-C.3-D5-O.3-D4 C.2-D1-C.3-D6-C.3-D7 C.2-D1-C.3-D7... | |
| 179 | |
| 180 FingerprintsVector;TopologicalPharmacophoreAtomPairs:ArbitrarySize:Min | |
| 181 Distance1:MaxDistance10;54;NumericalValues;IDsAndValuesString;H-D1-H H | |
| 182 -D1-NI HBA-D1-NI HBD-D1-NI H-D2-H H-D2-HBA H-D2-HBD HBA-D2-HBA HBA-D2- | |
| 183 HBD H-D3-H H-D3-HBA H-D3-HBD H-D3-NI HBA-D3-NI HBD-D3-NI H-D4-H H-D4-H | |
| 184 BA H-D4-HBD HBA-D4-HBA HBA-D4-HBD HBD-D4-HBD H-D5-H H-D5-HBA H-D5-...; | |
| 185 18 1 2 1 22 12 8 1 2 18 6 3 1 1 1 22 13 6 5 7 2 28 9 5 1 1 1 36 16 10 | |
| 186 3 4 1 37 10 8 1 35 10 9 3 3 1 28 7 7 4 18 16 12 5 1 2 1 | |
| 187 | |
| 188 FingerprintsVector;TopologicalPharmacophoreAtomPairs:FixedSize:MinDist | |
| 189 ance1:MaxDistance10;150;OrderedNumericalValues;ValuesString;18 0 0 1 0 | |
| 190 0 0 2 0 0 1 0 0 0 0 22 12 8 0 0 1 2 0 0 0 0 0 0 0 0 18 6 3 1 0 0 0 1 | |
| 191 0 0 1 0 0 0 0 22 13 6 0 0 5 7 0 0 2 0 0 0 0 0 28 9 5 1 0 0 0 1 0 0 1 0 | |
| 192 0 0 0 36 16 10 0 0 3 4 0 0 1 0 0 0 0 0 37 10 8 0 0 0 0 1 0 0 0 0 0 0 | |
| 193 0 35 10 9 0 0 3 3 0 0 1 0 0 0 0 0 28 7 7 4 0 0 0 0 0 0 0 0 0 0 0 18... | |
| 194 | |
| 195 FingerprintsVector;TopologicalPharmacophoreAtomTriplets:ArbitrarySize: | |
| 196 MinDistance1:MaxDistance10;696;NumericalValues;IDsAndValuesString;Ar1- | |
| 197 Ar1-Ar1 Ar1-Ar1-H1 Ar1-Ar1-HBA1 Ar1-Ar1-HBD1 Ar1-H1-H1 Ar1-H1-HBA1 Ar1 | |
| 198 -H1-HBD1 Ar1-HBA1-HBD1 H1-H1-H1 H1-H1-HBA1 H1-H1-HBD1 H1-HBA1-HBA1 H1- | |
| 199 HBA1-HBD1 H1-HBA1-NI1 H1-HBD1-NI1 HBA1-HBA1-NI1 HBA1-HBD1-NI1 Ar1-...; | |
| 200 46 106 8 3 83 11 4 1 21 5 3 1 2 2 1 1 1 100 101 18 11 145 132 26 14 23 | |
| 201 28 3 3 5 4 61 45 10 4 16 20 7 5 1 3 4 5 3 1 1 1 1 5 4 2 1 2 2 2 1 1 1 | |
| 202 119 123 24 15 185 202 41 25 22 17 3 5 85 95 18 11 23 17 3 1 1 6 4 ... | |
| 203 | |
| 204 FingerprintsVector;TopologicalPharmacophoreAtomTriplets:FixedSize:MinD | |
| 205 istance1:MaxDistance10;2692;OrderedNumericalValues;ValuesString;46 106 | |
| 206 8 3 0 0 83 11 4 0 0 0 1 0 0 0 0 0 0 0 0 21 5 3 0 0 1 2 2 0 0 1 0 0 0 | |
| 207 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 101 18 11 0 0 145 132 26 | |
| 208 14 0 0 23 28 3 3 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 45 10 4 0 | |
| 209 0 16 20 7 5 1 0 3 4 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 5 ... | |
| 210 | |
| 211 FUNCTIONS | |
| 212 AreFingerprintsStringValuesValid | |
| 213 $Status = AreFingerprintsStringValuesValid($FPString); | |
| 214 | |
| 215 Returns 0 or 1 based on whether *FingerprintsString* contains valid | |
| 216 values. | |
| 217 | |
| 218 GetDefaultBitStringFormat | |
| 219 $BitStringFormat = GetDefaultBitStringFormat(); | |
| 220 | |
| 221 Returns default BitStringFormat for fingerprints bit-vector strings. | |
| 222 | |
| 223 GetDefaultBitsOrder | |
| 224 $BitsOrder = GetDefaultBitsOrder(); | |
| 225 | |
| 226 Returns default BitsOrder for fingerprints bit-vector fingerprints. | |
| 227 | |
| 228 GetDefaultVectorStringFormat | |
| 229 $StringFormat = GetDefaultVectorStringFormat(); | |
| 230 | |
| 231 Returns default VectorStringFormat for fingerprints vector strings. | |
| 232 | |
| 233 GetFingeprintsStringDelimiter | |
| 234 $Delimiter = GetFingeprintsStringDelimiter(); | |
| 235 | |
| 236 Returns string Delimiter used to generate fingerprints bit-vector | |
| 237 and vector strings. | |
| 238 | |
| 239 GenerateFingerprintsBitVectorString | |
| 240 $FPString = GenerateFingerprintsBitVectorString($FPBitVectorObject, | |
| 241 [$BitStringFormat, $BitsOrder]); | |
| 242 | |
| 243 Returns a FingerprintsString generated using | |
| 244 *FingerprintsBitVectorObject* and optionally specified | |
| 245 *BitStringFormat* and *BitsOrder* values. | |
| 246 | |
| 247 Possible *BitStringFormat* values: *BinaryString, Binary, Bin, | |
| 248 HexadecimalString, Hexadecimal, or Hex*. Default *BitStringFormat* | |
| 249 value: *BinaryString*. | |
| 250 | |
| 251 Possible *BitsOrder* values: *Ascending or Descending*. Default | |
| 252 *BitsOrder* value: *Ascending*. | |
| 253 | |
| 254 GenerateFingerprintsVectorString | |
| 255 $FPString = GenerateFingerprintsVectorString($FPVectorObject, | |
| 256 [$VectorStringFormat]); | |
| 257 | |
| 258 Returns a FingerprintsString generated using | |
| 259 *FingerprintsVectorObject* and optionally specified | |
| 260 *VectorStringFormat*. | |
| 261 | |
| 262 Possible *VectorStringFormat* values: *IDsAndValuesString, | |
| 263 IDsAndValues, IDsAndValuesPairsString, IDsAndValuesPairs, | |
| 264 ValuesAndIDsString, ValuesAndIDs, ValuesAndIDsPairsString, | |
| 265 ValuesAndIDsPairs, ValuesString, Values*. | |
| 266 | |
| 267 Default *VectorStringFormat* value: for *NumericalValues* | |
| 268 *FPVectorType* - *IDsAndValuesString*; for all other *FPVectorType*s | |
| 269 - *ValuesString*. | |
| 270 | |
| 271 GenerateFingerprintsString | |
| 272 $FPString = GenerateFingerprintsBitVectorString($FPBitVectorObject, | |
| 273 [$BitStringFormat, $BitsOrder]); | |
| 274 | |
| 275 $FPString = GenerateFingerprintsVectorString($FPVectorObject, | |
| 276 [$VectorStringFormat]); | |
| 277 | |
| 278 Returns a FingerprintsString generated using | |
| 279 *FingerprintsBitVectorObject* or *FingerprintsVectorObject* and | |
| 280 optionally specified parameters. | |
| 281 | |
| 282 GetFingerprintsStringTypeAndDescription | |
| 283 ($FPType, $FPDescription) = GetFingerprintsStringTypeAndDescription( | |
| 284 $FPString); | |
| 285 | |
| 286 Returns FingerprintsStringType and *FingerprintsStringDescription* | |
| 287 strings for FingerprintsString corresponding to | |
| 288 FingerprintsBitVectorObject or FingerprintsVectorObject. | |
| 289 | |
| 290 GetFingerprintsStringValues | |
| 291 @FPStringValues = GetFingerprintsStringValues($FPString); | |
| 292 | |
| 293 Parses FingerprintsString corresponding to | |
| 294 FingerprintsBitVectorObject or FingerprintsVectorObject and returns | |
| 295 its individual component values as an array. | |
| 296 | |
| 297 ParseFingerprintsBitVectorString | |
| 298 $FPBitVectorObject = ParseFingerprintsBitVectorString($FPBitVectorString, | |
| 299 [$ValidateValues]); | |
| 300 | |
| 301 Returns FingerprintsBitVectorObject generated by parsing | |
| 302 *FingerprintsBitVectorString* with optional validation of its | |
| 303 component values. | |
| 304 | |
| 305 ParseFingerprintsString | |
| 306 $FPBitVectorObject = ParseFingerprintsBitVectorString($FPBitVectorString, | |
| 307 [$ValidateValues]); | |
| 308 | |
| 309 $FPVectorObject = ParseFingerprintsVectorString($FPVectorString, | |
| 310 [$ValidateValues]); | |
| 311 | |
| 312 Returns FingerprintsBitVectorObject or *FingerprintsVectorObject* | |
| 313 generated by parsing *FingerprintsBitVectorString* or | |
| 314 *FingerprintsVectorString* with optional validation of its component | |
| 315 values. | |
| 316 | |
| 317 ParseFingerprintsVectorString | |
| 318 $FPVectorObject = ParseFingerprintsVectorString($FPVectorString, | |
| 319 [$ValidateValues]); | |
| 320 | |
| 321 Returns FingerprintsVectorObject generated by parsing | |
| 322 *FingerprintsVectorString* with optional validation of its component | |
| 323 values. | |
| 324 | |
| 325 AUTHOR | |
| 326 Manish Sud <msud@san.rr.com> | |
| 327 | |
| 328 SEE ALSO | |
| 329 BitVector.pm, FingerprintsBitVector.pm, FingerprintsVector.pm, Vector.pm | |
| 330 | |
| 331 COPYRIGHT | |
| 332 Copyright (C) 2015 Manish Sud. All rights reserved. | |
| 333 | |
| 334 This file is part of MayaChemTools. | |
| 335 | |
| 336 MayaChemTools is free software; you can redistribute it and/or modify it | |
| 337 under the terms of the GNU Lesser General Public License as published by | |
| 338 the Free Software Foundation; either version 3 of the License, or (at | |
| 339 your option) any later version. | |
| 340 |
