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3 <title>MayaChemTools:Code:SortTextFiles.pl</title>
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14 1 #!/usr/bin/perl -w
15 2 <span class="c">#</span>
16 3 <span class="c"># $RCSfile: SortTextFiles.pl,v $</span>
17 4 <span class="c"># $Date: 2015/02/28 20:46:21 $</span>
18 5 <span class="c"># $Revision: 1.36 $</span>
19 6 <span class="c">#</span>
20 7 <span class="c"># Author: Manish Sud &lt;msud@san.rr.com&gt;</span>
21 8 <span class="c">#</span>
22 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span>
23 10 <span class="c">#</span>
24 11 <span class="c"># This file is part of MayaChemTools.</span>
25 12 <span class="c">#</span>
26 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span>
27 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span>
28 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span>
29 16 <span class="c"># later version.</span>
30 17 <span class="c">#</span>
31 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span>
32 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span>
33 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span>
34 21 <span class="c"># details.</span>
35 22 <span class="c">#</span>
36 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span>
37 24 <span class="c"># along with MayaChemTools; if not, see &lt;http://www.gnu.org/licenses/&gt; or</span>
38 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span>
39 26 <span class="c"># Boston, MA, 02111-1307, USA.</span>
40 27 <span class="c">#</span>
41 28
42 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span>
43 30 <span class="k">use</span> <span class="w">FindBin</span><span class="sc">;</span> <span class="k">use</span> <span class="w">lib</span> <span class="q">&quot;$FindBin::Bin/../lib&quot;</span><span class="sc">;</span>
44 31 <span class="k">use</span> <span class="w">Getopt::Long</span><span class="sc">;</span>
45 32 <span class="k">use</span> <span class="w">File::Basename</span><span class="sc">;</span>
46 33 <span class="k">use</span> <span class="w">Text::ParseWords</span><span class="sc">;</span>
47 34 <span class="k">use</span> <span class="w">Benchmark</span><span class="sc">;</span>
48 35 <span class="k">use</span> <span class="w">FileUtil</span><span class="sc">;</span>
49 36 <span class="k">use</span> <span class="w">TextUtil</span><span class="sc">;</span>
50 37
51 38 <span class="k">my</span><span class="s">(</span><span class="i">$ScriptName</span><span class="cm">,</span> <span class="i">%Options</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="cm">,</span> <span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$TotalTime</span><span class="s">)</span><span class="sc">;</span>
52 39
53 40 <span class="c"># Autoflush STDOUT</span>
54 41 <span class="i">$|</span> = <span class="n">1</span><span class="sc">;</span>
55 42
56 43 <span class="c"># Starting message...</span>
57 44 <span class="i">$ScriptName</span> = <span class="i">basename</span><span class="s">(</span><span class="i">$0</span><span class="s">)</span><span class="sc">;</span>
58 45 <span class="k">print</span> <span class="q">&quot;\n$ScriptName: Starting...\n\n&quot;</span><span class="sc">;</span>
59 46 <span class="i">$StartTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span>
60 47
61 48 <span class="c"># Get the options and setup script...</span>
62 49 <span class="i">SetupScriptUsage</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
63 50 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">help</span>} || <span class="i">@ARGV</span> &lt; <span class="n">1</span><span class="s">)</span> <span class="s">{</span>
64 51 <span class="k">die</span> <span class="i">GetUsageFromPod</span><span class="s">(</span><span class="q">&quot;$FindBin::Bin/$ScriptName&quot;</span><span class="s">)</span><span class="sc">;</span>
65 52 <span class="s">}</span>
66 53
67 54 <span class="k">my</span><span class="s">(</span><span class="i">@TextFilesList</span><span class="s">)</span><span class="sc">;</span>
68 55 <span class="i">@TextFilesList</span> = <span class="i">ExpandFileNames</span><span class="s">(</span>\<span class="i">@ARGV</span><span class="cm">,</span> <span class="q">&quot;csv tsv&quot;</span><span class="s">)</span><span class="sc">;</span>
69 56
70 57 <span class="k">print</span> <span class="q">&quot;Processing options...\n&quot;</span><span class="sc">;</span>
71 58 <span class="k">my</span><span class="s">(</span><span class="i">%OptionsInfo</span><span class="s">)</span><span class="sc">;</span>
72 59 <span class="i">ProcessOptions</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
73 60
74 61 <span class="k">print</span> <span class="q">&quot;Checking input text file(s)...\n&quot;</span><span class="sc">;</span>
75 62 <span class="k">my</span><span class="s">(</span><span class="i">%TextFilesInfo</span><span class="s">)</span><span class="sc">;</span>
76 63 <span class="i">RetrieveTextFilesInfo</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
77 64 <span class="i">ProcessColumnsInfo</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
78 65
79 66 <span class="c"># Generate output files...</span>
80 67 <span class="k">my</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span>
81 68 <span class="k">if</span> <span class="s">(</span><span class="i">@TextFilesList</span> &gt; <span class="n">1</span><span class="s">)</span> <span class="s">{</span>
82 69 <span class="k">print</span> <span class="q">&quot;\nProcessing text files...\n&quot;</span><span class="sc">;</span>
83 70 <span class="s">}</span>
84 71 <span class="k">for</span> <span class="i">$FileIndex</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#TextFilesList</span><span class="s">)</span> <span class="s">{</span>
85 72 <span class="k">if</span> <span class="s">(</span><span class="i">$TextFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$FileIndex</span>]<span class="s">)</span> <span class="s">{</span>
86 73 <span class="k">print</span> <span class="q">&quot;\nProcessing file $TextFilesList[$FileIndex]...\n&quot;</span><span class="sc">;</span>
87 74 <span class="i">SortTextFile</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span>
88 75 <span class="s">}</span>
89 76 <span class="s">}</span>
90 77 <span class="k">print</span> <span class="q">&quot;\n$ScriptName:Done...\n\n&quot;</span><span class="sc">;</span>
91 78
92 79 <span class="i">$EndTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span>
93 80 <span class="i">$TotalTime</span> = <span class="w">timediff</span> <span class="s">(</span><span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="s">)</span><span class="sc">;</span>
94 81 <span class="k">print</span> <span class="q">&quot;Total time: &quot;</span><span class="cm">,</span> <span class="i">timestr</span><span class="s">(</span><span class="i">$TotalTime</span><span class="s">)</span><span class="cm">,</span> <span class="q">&quot;\n&quot;</span><span class="sc">;</span>
95 82
96 83 <span class="c">###############################################################################</span>
97 84
98 85 <span class="c"># Sort it out...</span>
99 <a name="SortTextFile-"></a> 86 <span class="k">sub </span><span class="m">SortTextFile</span> <span class="s">{</span>
100 87 <span class="k">my</span><span class="s">(</span><span class="i">$Index</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
101 88 <span class="k">my</span><span class="s">(</span><span class="i">$TextFile</span><span class="cm">,</span> <span class="i">$NewTextFile</span><span class="cm">,</span> <span class="i">$KeyCol</span><span class="cm">,</span> <span class="i">$Line</span><span class="cm">,</span> <span class="i">$KeyColValue</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="cm">,</span> <span class="i">@ColLabels</span><span class="cm">,</span> <span class="i">@LineWords</span><span class="s">)</span><span class="sc">;</span>
102 89
103 90 <span class="i">$TextFile</span> = <span class="i">$TextFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span>
104 91 <span class="i">$InDelim</span> = <span class="i">$TextFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>]<span class="sc">;</span>
105 92 <span class="i">$NewTextFile</span> = <span class="i">$TextFilesInfo</span>{<span class="w">OutFile</span>}[<span class="i">$Index</span>]<span class="sc">;</span>
106 93 <span class="i">$KeyCol</span> = <span class="i">$TextFilesInfo</span>{<span class="w">KeyColNum</span>}[<span class="i">$Index</span>]<span class="sc">;</span>
107 94 <span class="i">@ColLabels</span> = <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColLabels</span>}[<span class="i">$Index</span>]}<span class="sc">;</span>
108 95
109 96 <span class="k">print</span> <span class="q">&quot;Generating new Text file $NewTextFile...\n&quot;</span><span class="sc">;</span>
110 97 <span class="k">open</span> <span class="w">NEWTEXTFILE</span><span class="cm">,</span> <span class="q">&quot;&gt;$NewTextFile&quot;</span> <span class="k">or</span> <span class="k">die</span> <span class="q">&quot;Error: Couldn&#39;t open $NewTextFile: $! \n&quot;</span><span class="sc">;</span>
111 98 <span class="k">open</span> <span class="w">TEXTFILE</span><span class="cm">,</span> <span class="q">&quot;$TextFile&quot;</span> <span class="k">or</span> <span class="k">die</span> <span class="q">&quot;Error: Can&#39;t open $TextFile: $! \n&quot;</span><span class="sc">;</span>
112 99
113 100 <span class="c"># Skip over column labels from old file...</span>
114 101 <span class="i">$Line</span> = <span class="i">GetTextLine</span><span class="s">(</span>\<span class="i">*TEXTFILE</span><span class="s">)</span><span class="sc">;</span>
115 102
116 103 <span class="c"># Add column lablels in new file...</span>
117 104 <span class="i">$Line</span> = <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@ColLabels</span><span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutDelim</span>}<span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span>
118 105 <span class="k">print</span> <span class="i">NEWTEXTFILE</span> <span class="q">&quot;$Line\n&quot;</span><span class="sc">;</span>
119 106
120 107 <span class="c"># Go over all rows and store the lines using key value as hash...</span>
121 108 <span class="k">my</span><span class="s">(</span><span class="i">%KeyToLinesMap</span><span class="cm">,</span> <span class="i">@InvalidDataLines</span><span class="cm">,</span> <span class="i">$LineCount</span><span class="s">)</span><span class="sc">;</span>
122 109
123 110 <span class="i">%KeyToLinesMap</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
124 111 <span class="i">@InvalidDataLines</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
125 112 <span class="i">$LineCount</span> = <span class="n">1</span><span class="sc">;</span>
126 113 <span class="j">TEXTLINE:</span> <span class="k">while</span> <span class="s">(</span><span class="i">$Line</span> = <span class="i">GetTextLine</span><span class="s">(</span>\<span class="i">*TEXTFILE</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
127 114 <span class="i">@LineWords</span> = <span class="i">quotewords</span><span class="s">(</span><span class="i">$InDelim</span><span class="cm">,</span> <span class="n">0</span><span class="cm">,</span> <span class="i">$Line</span><span class="s">)</span><span class="sc">;</span>
128 115 <span class="i">$LineCount</span>++<span class="sc">;</span>
129 116 <span class="k">if</span> <span class="s">(</span><span class="i">$KeyCol</span> &lt; <span class="i">@LineWords</span><span class="s">)</span> <span class="s">{</span>
130 117 <span class="i">$KeyColValue</span> = <span class="i">$LineWords</span>[<span class="i">$KeyCol</span>]<span class="sc">;</span>
131 118 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsNotEmpty</span><span class="s">(</span><span class="i">$KeyColValue</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
132 119 <span class="i">$Line</span> = <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@LineWords</span><span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutDelim</span>}<span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span>
133 120 <span class="k">push</span> <span class="i">@InvalidDataLines</span><span class="cm">,</span> <span class="i">$Line</span><span class="sc">;</span>
134 121 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span>
135 122 <span class="k">print</span> <span class="q">&quot;Ignoring line $LineCount: Contains empty value for key column $ColLabels[$KeyCol]: $Line\n&quot;</span><span class="sc">;</span>
136 123 <span class="s">}</span>
137 124 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
138 125 <span class="k">print</span> <span class="q">&quot;Ignoring line $LineCount: Contains empty value for key column $ColLabels[$KeyCol]...\n&quot;</span><span class="sc">;</span>
139 126 <span class="s">}</span>
140 127 <span class="k">next</span> <span class="j">TEXTLINE</span><span class="sc">;</span>
141 128 <span class="s">}</span>
142 129 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} =~ <span class="q">/^numeric$/i</span><span class="s">)</span> <span class="s">{</span>
143 130 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsFloat</span><span class="s">(</span><span class="i">$KeyColValue</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
144 131 <span class="i">$Line</span> = <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@LineWords</span><span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutDelim</span>}<span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span>
145 132 <span class="k">push</span> <span class="i">@InvalidDataLines</span><span class="cm">,</span> <span class="i">$Line</span><span class="sc">;</span>
146 133 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span>
147 134 <span class="k">print</span> <span class="q">&quot;Line number $LineCount: Contains non-numerical value for key column $ColLabels[$KeyCol]: $Line\n&quot;</span><span class="sc">;</span>
148 135 <span class="s">}</span>
149 136 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} &gt;= <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
150 137 <span class="k">print</span> <span class="q">&quot;Line number $LineCount: Contains non-numerical value for key column $ColLabels[$KeyCol]...\n&quot;</span><span class="sc">;</span>
151 138 <span class="s">}</span>
152 139 <span class="k">next</span> <span class="j">TEXTLINE</span><span class="sc">;</span>
153 140 <span class="s">}</span>
154 141 <span class="s">}</span>
155 142 <span class="k">if</span> <span class="s">(</span><span class="k">exists</span><span class="s">(</span><span class="i">$KeyToLinesMap</span>{<span class="i">$KeyColValue</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
156 143 <span class="c"># Append to existing line...</span>
157 144 <span class="i">$Line</span> = <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@LineWords</span><span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutDelim</span>}<span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span>
158 145 <span class="i">$KeyToLinesMap</span>{<span class="i">$KeyColValue</span>} .= <span class="q">&quot;\n&quot;</span> . <span class="i">$Line</span><span class="sc">;</span>
159 146 <span class="s">}</span>
160 147 <span class="k">else</span> <span class="s">{</span>
161 148 <span class="i">$Line</span> = <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@LineWords</span><span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutDelim</span>}<span class="cm">,</span> <span class="i">$OptionsInfo</span>{<span class="w">OutQuote</span>}<span class="s">)</span><span class="sc">;</span>
162 149 <span class="i">$KeyToLinesMap</span>{<span class="i">$KeyColValue</span>} = <span class="i">$Line</span><span class="sc">;</span>
163 150 <span class="s">}</span>
164 151 <span class="s">}</span>
165 152 <span class="s">}</span>
166 153 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">Sort</span>} =~ <span class="q">/^ascending$/i</span><span class="s">)</span> <span class="s">{</span>
167 154 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} =~ <span class="q">/^alphanumeric$/i</span><span class="s">)</span> <span class="s">{</span>
168 155 <span class="k">for</span> <span class="i">$KeyColValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="k">lc</span><span class="s">(</span><span class="i">$a</span><span class="s">)</span> <span class="k">cmp</span> <span class="k">lc</span><span class="s">(</span><span class="i">$b</span><span class="s">)</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToLinesMap</span> <span class="s">)</span> <span class="s">{</span>
169 156 <span class="k">print</span> <span class="i">NEWTEXTFILE</span> <span class="q">&quot;$KeyToLinesMap{$KeyColValue}\n&quot;</span><span class="sc">;</span>
170 157 <span class="s">}</span>
171 158 <span class="s">}</span>
172 159 <span class="k">else</span> <span class="s">{</span>
173 160 <span class="k">for</span> <span class="i">$KeyColValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="i">$a</span> &lt;=&gt; <span class="i">$b</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToLinesMap</span> <span class="s">)</span> <span class="s">{</span>
174 161 <span class="k">print</span> <span class="i">NEWTEXTFILE</span> <span class="q">&quot;$KeyToLinesMap{$KeyColValue}\n&quot;</span><span class="sc">;</span>
175 162 <span class="s">}</span>
176 163 <span class="s">}</span>
177 164 <span class="s">}</span>
178 165 <span class="k">else</span> <span class="s">{</span>
179 166 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} =~ <span class="q">/^alphanumeric$/i</span><span class="s">)</span> <span class="s">{</span>
180 167 <span class="k">for</span> <span class="i">$KeyColValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="k">lc</span><span class="s">(</span><span class="i">$b</span><span class="s">)</span> <span class="k">cmp</span> <span class="k">lc</span><span class="s">(</span><span class="i">$a</span><span class="s">)</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToLinesMap</span> <span class="s">)</span> <span class="s">{</span>
181 168 <span class="k">print</span> <span class="i">NEWTEXTFILE</span> <span class="q">&quot;$KeyToLinesMap{$KeyColValue}\n&quot;</span><span class="sc">;</span>
182 169 <span class="s">}</span>
183 170 <span class="s">}</span>
184 171 <span class="k">else</span> <span class="s">{</span>
185 172 <span class="k">for</span> <span class="i">$KeyColValue</span> <span class="s">(</span><span class="k">sort</span> <span class="s">{</span> <span class="i">$b</span> &lt;=&gt; <span class="i">$a</span> <span class="s">}</span> <span class="k">keys</span> <span class="i">%KeyToLinesMap</span> <span class="s">)</span> <span class="s">{</span>
186 173 <span class="k">print</span> <span class="i">NEWTEXTFILE</span> <span class="q">&quot;$KeyToLinesMap{$KeyColValue}\n&quot;</span><span class="sc">;</span>
187 174 <span class="s">}</span>
188 175 <span class="s">}</span>
189 176 <span class="s">}</span>
190 177 <span class="c"># Write out the lines with invalid data...</span>
191 178 <span class="k">if</span> <span class="s">(</span><span class="i">@InvalidDataLines</span><span class="s">)</span> <span class="s">{</span>
192 179 <span class="k">print</span> <span class="q">&quot;Placing &quot;</span><span class="cm">,</span> <span class="k">scalar</span><span class="s">(</span><span class="i">@InvalidDataLines</span><span class="s">)</span><span class="cm">,</span><span class="q">&quot; line(s) with invalid column key data at the end...\n&quot;</span><span class="sc">;</span>
193 180 <span class="k">for</span> <span class="i">$Line</span> <span class="s">(</span><span class="i">@InvalidDataLines</span><span class="s">)</span> <span class="s">{</span>
194 181 <span class="k">print</span> <span class="i">NEWTEXTFILE</span> <span class="q">&quot;$Line\n&quot;</span><span class="sc">;</span>
195 182 <span class="s">}</span>
196 183 <span class="s">}</span>
197 184 <span class="k">close</span> <span class="w">NEWTEXTFILE</span><span class="sc">;</span>
198 185 <span class="k">close</span> <span class="w">TEXTFILE</span><span class="sc">;</span>
199 186
200 187 <span class="s">}</span>
201 188
202 189 <span class="c"># Retrieve information about input text files...</span>
203 <a name="RetrieveTextFilesInfo-"></a> 190 <span class="k">sub </span><span class="m">RetrieveTextFilesInfo</span> <span class="s">{</span>
204 191 <span class="k">my</span><span class="s">(</span><span class="i">$Index</span><span class="cm">,</span> <span class="i">$TextFile</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="cm">,</span> <span class="i">$Line</span><span class="cm">,</span> <span class="i">@ColLabels</span><span class="cm">,</span> <span class="i">$OutFileRoot</span><span class="cm">,</span> <span class="i">$OutFile</span><span class="cm">,</span> <span class="i">$ColNum</span><span class="cm">,</span> <span class="i">$ColLabel</span><span class="s">)</span><span class="sc">;</span>
205 192
206 193 <span class="i">%TextFilesInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
207 194
208 195 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">FileOkay</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
209 196 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColCount</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
210 197 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColLabels</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
211 198 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColLabelToNumMap</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
212 199 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">InDelim</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
213 200 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">OutFile</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
214 201
215 202 <span class="j">FILELIST:</span> <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#TextFilesList</span><span class="s">)</span> <span class="s">{</span>
216 203 <span class="i">$TextFile</span> = <span class="i">$TextFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span>
217 204
218 205 <span class="i">$TextFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span>
219 206 <span class="i">$TextFilesInfo</span>{<span class="w">ColCount</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span>
220 207 <span class="i">$TextFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>] = <span class="q">&quot;&quot;</span><span class="sc">;</span>
221 208 <span class="i">$TextFilesInfo</span>{<span class="w">OutFile</span>}[<span class="i">$Index</span>] = <span class="q">&quot;&quot;</span><span class="sc">;</span>
222 209 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColLabels</span>}[<span class="i">$Index</span>]} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
223 210 <span class="i">%</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColLabelToNumMap</span>}[<span class="i">$Index</span>]} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
224 211
225 212 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$TextFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
226 213 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile: It doesn&#39;t exist\n&quot;</span><span class="sc">;</span>
227 214 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
228 215 <span class="s">}</span>
229 216 <span class="k">if</span> <span class="s">(</span>!<span class="i">CheckFileType</span><span class="s">(</span><span class="i">$TextFile</span><span class="cm">,</span> <span class="q">&quot;csv tsv&quot;</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
230 217 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile: It&#39;s not a csv or tsv file\n&quot;</span><span class="sc">;</span>
231 218 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
232 219 <span class="s">}</span>
233 220 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$TextFile</span><span class="s">)</span><span class="sc">;</span>
234 221 <span class="k">if</span> <span class="s">(</span><span class="i">$FileExt</span> =~ <span class="q">/^tsv$/i</span><span class="s">)</span> <span class="s">{</span>
235 222 <span class="i">$InDelim</span> = <span class="q">&quot;\t&quot;</span><span class="sc">;</span>
236 223 <span class="s">}</span>
237 224 <span class="k">else</span> <span class="s">{</span>
238 225 <span class="i">$InDelim</span> = <span class="q">&quot;\,&quot;</span><span class="sc">;</span>
239 226 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">indelim</span>} !~ <span class="q">/^(comma|semicolon)$/i</span><span class="s">)</span> <span class="s">{</span>
240 227 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile: The value specified, $Options{indelim}, for option \&quot;--indelim\&quot; is not valid for csv files\n&quot;</span><span class="sc">;</span>
241 228 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
242 229 <span class="s">}</span>
243 230 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">indelim</span>} =~ <span class="q">/^semicolon$/i</span><span class="s">)</span> <span class="s">{</span>
244 231 <span class="i">$InDelim</span> = <span class="q">&quot;\;&quot;</span><span class="sc">;</span>
245 232 <span class="s">}</span>
246 233 <span class="s">}</span>
247 234
248 235 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span> <span class="w">TEXTFILE</span><span class="cm">,</span> <span class="q">&quot;$TextFile&quot;</span><span class="s">)</span> <span class="s">{</span>
249 236 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile: Couldn&#39;t open it: $! \n&quot;</span><span class="sc">;</span>
250 237 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
251 238 <span class="s">}</span>
252 239
253 240 <span class="i">$Line</span> = <span class="i">GetTextLine</span><span class="s">(</span>\<span class="i">*TEXTFILE</span><span class="s">)</span><span class="sc">;</span>
254 241 <span class="i">@ColLabels</span> = <span class="i">quotewords</span><span class="s">(</span><span class="i">$InDelim</span><span class="cm">,</span> <span class="n">0</span><span class="cm">,</span> <span class="i">$Line</span><span class="s">)</span><span class="sc">;</span>
255 242 <span class="k">close</span> <span class="w">TEXTFILE</span><span class="sc">;</span>
256 243
257 244 <span class="i">$FileDir</span> = <span class="q">&quot;&quot;</span><span class="sc">;</span> <span class="i">$FileName</span> = <span class="q">&quot;&quot;</span><span class="sc">;</span> <span class="i">$FileExt</span> = <span class="q">&quot;&quot;</span><span class="sc">;</span>
258 245 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$TextFile</span><span class="s">)</span><span class="sc">;</span>
259 246 <span class="i">$FileExt</span> = <span class="q">&quot;csv&quot;</span><span class="sc">;</span>
260 247 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">outdelim</span>} =~ <span class="q">/^tab$/i</span><span class="s">)</span> <span class="s">{</span>
261 248 <span class="i">$FileExt</span> = <span class="q">&quot;tsv&quot;</span><span class="sc">;</span>
262 249 <span class="s">}</span>
263 250 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">root</span>} &amp;&amp; <span class="s">(</span><span class="i">@TextFilesList</span> == <span class="n">1</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
264 251 <span class="k">my</span> <span class="s">(</span><span class="i">$RootFileDir</span><span class="cm">,</span> <span class="i">$RootFileName</span><span class="cm">,</span> <span class="i">$RootFileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">root</span>}<span class="s">)</span><span class="sc">;</span>
265 252 <span class="k">if</span> <span class="s">(</span><span class="i">$RootFileName</span> &amp;&amp; <span class="i">$RootFileExt</span><span class="s">)</span> <span class="s">{</span>
266 253 <span class="i">$FileName</span> = <span class="i">$RootFileName</span><span class="sc">;</span>
267 254 <span class="s">}</span>
268 255 <span class="k">else</span> <span class="s">{</span>
269 256 <span class="i">$FileName</span> = <span class="i">$Options</span>{<span class="w">root</span>}<span class="sc">;</span>
270 257 <span class="s">}</span>
271 258 <span class="i">$OutFileRoot</span> = <span class="i">$FileName</span><span class="sc">;</span>
272 259 <span class="s">}</span>
273 260 <span class="k">else</span> <span class="s">{</span>
274 261 <span class="i">$OutFileRoot</span> = <span class="i">$FileName</span> . <span class="q">&quot;SortedByColumn&quot;</span><span class="sc">;</span>
275 262 <span class="s">}</span>
276 263
277 264 <span class="i">$OutFile</span> = <span class="i">$OutFileRoot</span> . <span class="q">&quot;.$FileExt&quot;</span><span class="sc">;</span>
278 265 <span class="k">if</span> <span class="s">(</span><span class="k">lc</span><span class="s">(</span><span class="i">$OutFile</span><span class="s">)</span> <span class="k">eq</span> <span class="k">lc</span><span class="s">(</span><span class="i">$TextFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
279 266 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile:Output file name, $OutFile, is same as input text file name, $TextFile\n&quot;</span><span class="sc">;</span>
280 267 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
281 268 <span class="s">}</span>
282 269 <span class="k">if</span> <span class="s">(</span>!<span class="i">$Options</span>{<span class="w">overwrite</span>}<span class="s">)</span> <span class="s">{</span>
283 270 <span class="k">if</span> <span class="s">(</span><span class="k">-e</span> <span class="i">$OutFile</span><span class="s">)</span> <span class="s">{</span>
284 271 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile: The file $OutFile already exists\n&quot;</span><span class="sc">;</span>
285 272 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span>
286 273 <span class="s">}</span>
287 274 <span class="s">}</span>
288 275
289 276 <span class="i">$TextFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">1</span><span class="sc">;</span>
290 277 <span class="i">$TextFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>] = <span class="i">$InDelim</span><span class="sc">;</span>
291 278 <span class="i">$TextFilesInfo</span>{<span class="w">OutFile</span>}[<span class="i">$Index</span>] = <span class="q">&quot;$OutFile&quot;</span><span class="sc">;</span>
292 279
293 280 <span class="i">$TextFilesInfo</span>{<span class="w">ColCount</span>}[<span class="i">$Index</span>] = <span class="i">@ColLabels</span><span class="sc">;</span>
294 281 <span class="k">push</span> <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">ColLabels</span>}[<span class="i">$Index</span>]}<span class="cm">,</span> <span class="i">@ColLabels</span><span class="sc">;</span>
295 282 <span class="k">for</span> <span class="i">$ColNum</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#ColLabels</span><span class="s">)</span> <span class="s">{</span>
296 283 <span class="i">$ColLabel</span> = <span class="i">$ColLabels</span>[<span class="i">$ColNum</span>]<span class="sc">;</span>
297 284 <span class="i">$TextFilesInfo</span>{<span class="w">ColLabelToNumMap</span>}[<span class="i">$Index</span>]{<span class="i">$ColLabel</span>} = <span class="i">$ColNum</span><span class="sc">;</span>
298 285 <span class="s">}</span>
299 286 <span class="s">}</span>
300 287
301 288 <span class="s">}</span>
302 289
303 290 <span class="c"># Make sure specified key column are okay...</span>
304 <a name="ProcessColumnsInfo-"></a> 291 <span class="k">sub </span><span class="m">ProcessColumnsInfo</span> <span class="s">{</span>
305 292 <span class="k">my</span><span class="s">(</span><span class="i">$Index</span><span class="cm">,</span> <span class="i">$TextFile</span><span class="cm">,</span> <span class="i">$SpecifiedKeyCol</span><span class="s">)</span><span class="sc">;</span>
306 293
307 294 <span class="i">@</span>{<span class="i">$TextFilesInfo</span>{<span class="w">KeyColNum</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
308 295
309 296 <span class="i">$SpecifiedKeyCol</span> = <span class="i">$OptionsInfo</span>{<span class="w">SpecifiedKeyCol</span>}<span class="sc">;</span>
310 297
311 298 <span class="j">FILELIST:</span> <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#TextFilesList</span><span class="s">)</span> <span class="s">{</span>
312 299 <span class="i">$TextFile</span> = <span class="i">$TextFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span>
313 300 <span class="i">$TextFilesInfo</span>{<span class="w">KeyColNum</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span>
314 301
315 302 <span class="k">if</span> <span class="s">(</span><span class="i">$TextFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>]<span class="s">)</span> <span class="s">{</span>
316 303 <span class="k">my</span><span class="s">(</span><span class="i">$KeyColNum</span><span class="cm">,</span> <span class="i">$KeyColValid</span><span class="s">)</span><span class="sc">;</span>
317 304
318 305 <span class="i">$KeyColNum</span> = <span class="n">0</span><span class="sc">;</span>
319 306 <span class="i">$KeyColValid</span> = <span class="n">1</span><span class="sc">;</span>
320 307 <span class="k">if</span> <span class="s">(</span><span class="i">$SpecifiedKeyCol</span><span class="s">)</span> <span class="s">{</span>
321 308 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">Mode</span>} =~ <span class="q">/^colnum$/i</span><span class="s">)</span> <span class="s">{</span>
322 309 <span class="k">if</span> <span class="s">(</span><span class="i">$SpecifiedKeyCol</span> &lt;= <span class="i">$TextFilesInfo</span>{<span class="w">ColCount</span>}[<span class="i">$Index</span>]<span class="s">)</span> <span class="s">{</span>
323 310 <span class="i">$KeyColNum</span> = <span class="i">$SpecifiedKeyCol</span> - <span class="n">1</span><span class="sc">;</span>
324 311 <span class="s">}</span>
325 312 <span class="k">else</span> <span class="s">{</span>
326 313 <span class="i">$KeyColValid</span> = <span class="n">0</span><span class="sc">;</span>
327 314 <span class="s">}</span>
328 315 <span class="s">}</span>
329 316 <span class="k">else</span> <span class="s">{</span>
330 317 <span class="k">if</span> <span class="s">(</span><span class="k">exists</span><span class="s">(</span><span class="i">$TextFilesInfo</span>{<span class="w">ColLabelToNumMap</span>}[<span class="i">$Index</span>]{<span class="i">$SpecifiedKeyCol</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
331 318 <span class="i">$KeyColNum</span> = <span class="i">$TextFilesInfo</span>{<span class="w">ColLabelToNumMap</span>}[<span class="i">$Index</span>]{<span class="i">$SpecifiedKeyCol</span>}<span class="sc">;</span>
332 319 <span class="s">}</span>
333 320 <span class="k">else</span> <span class="s">{</span>
334 321 <span class="i">$KeyColValid</span> = <span class="n">0</span><span class="sc">;</span>
335 322 <span class="s">}</span>
336 323 <span class="s">}</span>
337 324 <span class="s">}</span>
338 325 <span class="k">if</span> <span class="s">(</span><span class="i">$KeyColValid</span><span class="s">)</span> <span class="s">{</span>
339 326 <span class="i">$TextFilesInfo</span>{<span class="w">KeyColNum</span>}[<span class="i">$Index</span>] = <span class="i">$KeyColNum</span><span class="sc">;</span>
340 327 <span class="s">}</span>
341 328 <span class="k">else</span> <span class="s">{</span>
342 329 <span class="k">warn</span> <span class="q">&quot;Warning: Ignoring file $TextFile: Column key specified, $SpecifiedKeyCol, using \&quot;k --key\&quot; option doesn&#39;t exist\n&quot;</span><span class="sc">;</span>
343 330 <span class="i">$TextFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span>
344 331 <span class="s">}</span>
345 332 <span class="s">}</span>
346 333 <span class="s">}</span>
347 334 <span class="s">}</span>
348 335
349 336 <span class="c"># Process option values...</span>
350 <a name="ProcessOptions-"></a> 337 <span class="k">sub </span><span class="m">ProcessOptions</span> <span class="s">{</span>
351 338 <span class="i">%OptionsInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
352 339
353 340 <span class="i">$OptionsInfo</span>{<span class="w">Mode</span>} = <span class="i">$Options</span>{<span class="w">mode</span>}<span class="sc">;</span>
354 341
355 342 <span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} = <span class="i">$Options</span>{<span class="w">detail</span>}<span class="sc">;</span>
356 343
357 344 <span class="i">$OptionsInfo</span>{<span class="w">Sort</span>} = <span class="i">$Options</span>{<span class="w">sort</span>}<span class="sc">;</span>
358 345 <span class="i">$OptionsInfo</span>{<span class="w">KeyData</span>} = <span class="i">$Options</span>{<span class="w">keydata</span>}<span class="sc">;</span>
359 346
360 347 <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>} = <span class="i">$Options</span>{<span class="w">indelim</span>}<span class="sc">;</span>
361 348
362 349 <span class="i">$OptionsInfo</span>{<span class="w">OutDelim</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">outdelim</span>} =~ <span class="q">/^tab$/i</span> <span class="s">)</span> ? <span class="q">&quot;\t&quot;</span> <span class="co">:</span> <span class="s">(</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">outdelim</span>} =~ <span class="q">/^semicolon$/i</span><span class="s">)</span> ? <span class="q">&quot;\;&quot;</span> <span class="co">:</span> <span class="q">&quot;\,&quot;</span><span class="s">)</span><span class="sc">;</span>
363 350 <span class="i">$OptionsInfo</span>{<span class="w">OutQuote</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">quote</span>} =~ <span class="q">/^yes$/i</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
364 351
365 352 <span class="i">$OptionsInfo</span>{<span class="w">Overwrite</span>} = <span class="k">defined</span> <span class="i">$Options</span>{<span class="w">overwrite</span>} ? <span class="i">$Options</span>{<span class="w">overwrite</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span>
366 353 <span class="i">$OptionsInfo</span>{<span class="w">Root</span>} = <span class="k">defined</span> <span class="i">$Options</span>{<span class="w">root</span>} ? <span class="i">$Options</span>{<span class="w">root</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span>
367 354
368 355 <span class="i">$OptionsInfo</span>{<span class="w">Key</span>} = <span class="k">defined</span> <span class="i">$Options</span>{<span class="w">key</span>} ? <span class="i">$Options</span>{<span class="w">key</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span>
369 356 <span class="i">$OptionsInfo</span>{<span class="w">SpecifiedKeyCol</span>} = <span class="q">&quot;&quot;</span><span class="sc">;</span>
370 357
371 358 <span class="k">if</span> <span class="s">(</span><span class="k">defined</span> <span class="i">$Options</span>{<span class="w">key</span>}<span class="s">)</span> <span class="s">{</span>
372 359 <span class="i">$OptionsInfo</span>{<span class="w">SpecifiedKeyCol</span>} = <span class="i">$Options</span>{<span class="w">key</span>}<span class="sc">;</span>
373 360 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">mode</span>} =~ <span class="q">/^colnum$/i</span><span class="s">)</span> <span class="s">{</span>
374 361 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">SpecifiedKeyCol</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
375 362 <span class="k">die</span> <span class="q">&quot;Error: Invalid value $Options{key} specified using \&quot;-k --key\&quot; option: Allowed values: &gt; 0\n&quot;</span><span class="sc">;</span>
376 363 <span class="s">}</span>
377 364 <span class="s">}</span>
378 365 <span class="s">}</span>
379 366 <span class="s">}</span>
380 367
381 368 <span class="c"># Setup script usage and retrieve command line arguments specified using various options...</span>
382 <a name="SetupScriptUsage-"></a> 369 <span class="k">sub </span><span class="m">SetupScriptUsage</span> <span class="s">{</span>
383 370 <span class="i">%Options</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
384 371
385 372 <span class="i">$Options</span>{<span class="w">detail</span>} = <span class="n">1</span><span class="sc">;</span>
386 373 <span class="i">$Options</span>{<span class="w">mode</span>} = <span class="q">&quot;colnum&quot;</span><span class="sc">;</span>
387 374 <span class="i">$Options</span>{<span class="w">sort</span>} = <span class="q">&quot;ascending&quot;</span><span class="sc">;</span>
388 375 <span class="i">$Options</span>{<span class="w">keydata</span>} = <span class="q">&quot;numeric&quot;</span><span class="sc">;</span>
389 376 <span class="i">$Options</span>{<span class="w">indelim</span>} = <span class="q">&quot;comma&quot;</span><span class="sc">;</span>
390 377 <span class="i">$Options</span>{<span class="w">outdelim</span>} = <span class="q">&quot;comma&quot;</span><span class="sc">;</span>
391 378 <span class="i">$Options</span>{<span class="w">quote</span>} = <span class="q">&quot;yes&quot;</span><span class="sc">;</span>
392 379 <span class="k">if</span> <span class="s">(</span>!<span class="i">GetOptions</span><span class="s">(</span>\<span class="i">%Options</span><span class="cm">,</span> <span class="q">&quot;detail|d=i&quot;</span><span class="cm">,</span> <span class="q">&quot;help|h&quot;</span><span class="cm">,</span> <span class="q">&quot;indelim=s&quot;</span><span class="cm">,</span> <span class="q">&quot;key|k=s&quot;</span><span class="cm">,</span> <span class="q">&quot;keydata=s&quot;</span><span class="cm">,</span> <span class="q">&quot;mode|m=s&quot;</span><span class="cm">,</span> <span class="q">&quot;outdelim=s&quot;</span><span class="cm">,</span> <span class="q">&quot;overwrite|o&quot;</span><span class="cm">,</span> <span class="q">&quot;quote|q=s&quot;</span><span class="cm">,</span> <span class="q">&quot;root|r=s&quot;</span><span class="cm">,</span> <span class="q">&quot;sort|s=s&quot;</span><span class="cm">,</span> <span class="q">&quot;workingdir|w=s&quot;</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
393 380 <span class="k">die</span> <span class="q">&quot;\nTo get a list of valid options and their values, use \&quot;$ScriptName -h\&quot; or\n\&quot;perl -S $ScriptName -h\&quot; command and try again...\n&quot;</span><span class="sc">;</span>
394 381 <span class="s">}</span>
395 382 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span>
396 383 <span class="k">if</span> <span class="s">(</span>! <span class="k">-d</span> <span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span>
397 384 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{workingdir}, for option \&quot;-w --workingdir\&quot; is not a directory name.\n&quot;</span><span class="sc">;</span>
398 385 <span class="s">}</span>
399 386 <span class="k">chdir</span> <span class="i">$Options</span>{<span class="w">workingdir</span>} <span class="k">or</span> <span class="k">die</span> <span class="q">&quot;Error: Couldn&#39;t chdir $Options{workingdir}: $! \n&quot;</span><span class="sc">;</span>
400 387 <span class="s">}</span>
401 388 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">mode</span>} !~ <span class="q">/^(colnum|collabel)$/i</span><span class="s">)</span> <span class="s">{</span>
402 389 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{mode}, for option \&quot;-m --mode\&quot; is not valid. Allowed values: colnum or collabel\n&quot;</span><span class="sc">;</span>
403 390 <span class="s">}</span>
404 391 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">keydata</span>} !~ <span class="q">/^(numeric|alphanumeric)$/i</span><span class="s">)</span> <span class="s">{</span>
405 392 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{keydata}, for option \&quot;--keydata\&quot; is not valid. Allowed values: numeric or alphanumeric\n&quot;</span><span class="sc">;</span>
406 393 <span class="s">}</span>
407 394 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">indelim</span>} !~ <span class="q">/^(comma|semicolon)$/i</span><span class="s">)</span> <span class="s">{</span>
408 395 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{indelim}, for option \&quot;--indelim\&quot; is not valid. Allowed values: comma or semicolon\n&quot;</span><span class="sc">;</span>
409 396 <span class="s">}</span>
410 397 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">outdelim</span>} !~ <span class="q">/^(comma|semicolon|tab)$/i</span><span class="s">)</span> <span class="s">{</span>
411 398 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{outdelim}, for option \&quot;--outdelim\&quot; is not valid. Allowed values: comma, tab, or semicolon\n&quot;</span><span class="sc">;</span>
412 399 <span class="s">}</span>
413 400 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">quote</span>} !~ <span class="q">/^(yes|no)$/i</span><span class="s">)</span> <span class="s">{</span>
414 401 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{quote}, for option \&quot;-q --quote\&quot; is not valid. Allowed values: yes or no\n&quot;</span><span class="sc">;</span>
415 402 <span class="s">}</span>
416 403 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">sort</span>} !~ <span class="q">/^(ascending|descending)$/i</span><span class="s">)</span> <span class="s">{</span>
417 404 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{sort}, for option \&quot;-s --sort\&quot; is not valid. Allowed values: ascending or descending\n&quot;</span><span class="sc">;</span>
418 405 <span class="s">}</span>
419 406 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">detail</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
420 407 <span class="k">die</span> <span class="q">&quot;Error: The value specified, $Options{detail}, for option \&quot;-d --detail\&quot; is not valid. Allowed values: &gt; 0\n&quot;</span><span class="sc">;</span>
421 408 <span class="s">}</span>
422 409 <span class="s">}</span>
423 410
424 <a name="EOF-"></a></pre>
425 <p>&nbsp;</p>
426 <br />
427 <center>
428 <img src="../../../images/h2o2.png">
429 </center>
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