|
0
|
1 <html>
|
|
|
2 <head>
|
|
|
3 <title>MayaChemTools:Code:FileIO::FingerprintsFPFileIO.pm</title>
|
|
|
4 <meta http-equiv="content-type" content="text/html;charset=utf-8">
|
|
|
5 <link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css">
|
|
|
6 </head>
|
|
|
7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10">
|
|
|
8 <br/>
|
|
|
9 <center>
|
|
|
10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a>
|
|
|
11 </center>
|
|
|
12 <br/>
|
|
|
13 <pre>
|
|
|
14 <a name="package-FileIO::FingerprintsFPFileIO-"></a> 1 <span class="k">package </span><span class="i">FileIO::FingerprintsFPFileIO</span><span class="sc">;</span>
|
|
|
15 2 <span class="c">#</span>
|
|
|
16 3 <span class="c"># $RCSfile: FingerprintsFPFileIO.pm,v $</span>
|
|
|
17 4 <span class="c"># $Date: 2015/02/28 20:48:43 $</span>
|
|
|
18 5 <span class="c"># $Revision: 1.19 $</span>
|
|
|
19 6 <span class="c">#</span>
|
|
|
20 7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span>
|
|
|
21 8 <span class="c">#</span>
|
|
|
22 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span>
|
|
|
23 10 <span class="c">#</span>
|
|
|
24 11 <span class="c"># This file is part of MayaChemTools.</span>
|
|
|
25 12 <span class="c">#</span>
|
|
|
26 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span>
|
|
|
27 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span>
|
|
|
28 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span>
|
|
|
29 16 <span class="c"># later version.</span>
|
|
|
30 17 <span class="c">#</span>
|
|
|
31 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span>
|
|
|
32 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span>
|
|
|
33 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span>
|
|
|
34 21 <span class="c"># details.</span>
|
|
|
35 22 <span class="c">#</span>
|
|
|
36 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span>
|
|
|
37 24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span>
|
|
|
38 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span>
|
|
|
39 26 <span class="c"># Boston, MA, 02111-1307, USA.</span>
|
|
|
40 27 <span class="c">#</span>
|
|
|
41 28
|
|
|
42 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span>
|
|
|
43 30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span>
|
|
|
44 31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span>
|
|
|
45 32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
46 33 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
47 34 <span class="k">use</span> <span class="w">FileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
48 35 <span class="k">use</span> <span class="w">TimeUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
49 36 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsStringUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
50 37 <span class="k">use</span> <span class="w">PackageInfo</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
51 38 <span class="k">use</span> <span class="w">FileIO::FileIO</span><span class="sc">;</span>
|
|
|
52 39
|
|
|
53 40 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span>
|
|
|
54 41
|
|
|
55 42 <span class="i">@ISA</span> = <span class="q">qw(FileIO::FileIO Exporter)</span><span class="sc">;</span>
|
|
|
56 43 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span>
|
|
|
57 44 <span class="i">@EXPORT_OK</span> = <span class="q">qw(IsFingerprintsFPFile)</span><span class="sc">;</span>
|
|
|
58 45
|
|
|
59 46 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span> <span class="cm">=></span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span>
|
|
|
60 47
|
|
|
61 48 <span class="c"># Setup class variables...</span>
|
|
|
62 49 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span>
|
|
|
63 50 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
64 51
|
|
|
65 52 <span class="c"># Class constructor...</span>
|
|
|
66 <a name="new-"></a> 53 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span>
|
|
|
67 54 <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
68 55
|
|
|
69 56 <span class="c"># Initialize object...</span>
|
|
|
70 57 <span class="k">my</span> <span class="i">$This</span> = <span class="i">$Class</span><span class="i">->SUPER::new</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
71 58 <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span>
|
|
|
72 59 <span class="i">$This</span><span class="i">->_InitializeFingerprintsFPFileIO</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
73 60
|
|
|
74 61 <span class="i">$This</span><span class="i">->_InitializeFingerprintsFPFileIOProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
|
|
|
75 62
|
|
|
76 63 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
77 64 <span class="s">}</span>
|
|
|
78 65
|
|
|
79 66 <span class="c"># Initialize object data...</span>
|
|
|
80 67 <span class="c">#</span>
|
|
|
81 <a name="_InitializeFingerprintsFPFileIO-"></a> 68 <span class="k">sub </span><span class="m">_InitializeFingerprintsFPFileIO</span> <span class="s">{</span>
|
|
|
82 69 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
83 70
|
|
|
84 71 <span class="c"># Fingerprints string data format during read/write...</span>
|
|
|
85 72 <span class="c">#</span>
|
|
|
86 73 <span class="c"># For file read:</span>
|
|
|
87 74 <span class="c">#</span>
|
|
|
88 75 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span>
|
|
|
89 76 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span>
|
|
|
90 77 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span>
|
|
|
91 78 <span class="c">#</span>
|
|
|
92 79 <span class="c"># Default value: AutoDetect</span>
|
|
|
93 80 <span class="c">#</span>
|
|
|
94 81 <span class="c"># For file write:</span>
|
|
|
95 82 <span class="c">#</span>
|
|
|
96 83 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span>
|
|
|
97 84 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span>
|
|
|
98 85 <span class="c">#</span>
|
|
|
99 86 <span class="c"># Default value: undef</span>
|
|
|
100 87 <span class="c">#</span>
|
|
|
101 88 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
102 89
|
|
|
103 90 <span class="c"># For file read:</span>
|
|
|
104 91 <span class="c">#</span>
|
|
|
105 92 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span>
|
|
|
106 93 <span class="c">#</span>
|
|
|
107 94 <span class="c"># For file write:</span>
|
|
|
108 95 <span class="c">#</span>
|
|
|
109 96 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span>
|
|
|
110 97 <span class="c"># o Any supported fingerprints object: PathLengthFingerprints, ExtendedConnectivity, and so on.</span>
|
|
|
111 98 <span class="c">#</span>
|
|
|
112 99 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
113 100
|
|
|
114 101 <span class="c"># Fingeprints string for current line during read/write...</span>
|
|
|
115 102 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
116 103
|
|
|
117 104 <span class="c"># Partial fingeprints string corresponding to what's on the current line for current</span>
|
|
|
118 105 <span class="c"># line during read/write...</span>
|
|
|
119 106 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
120 107
|
|
|
121 108 <span class="c"># Required header data keys and values during read/write...</span>
|
|
|
122 109 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
123 110 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
124 111
|
|
|
125 112 <span class="c"># First data line read/write...</span>
|
|
|
126 113 <span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
127 114
|
|
|
128 115 <span class="c"># Current fingerprints string data line number during read/write...</span>
|
|
|
129 116 <span class="i">$This</span>->{<span class="w">LineNum</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
130 117
|
|
|
131 118 <span class="c"># FP line data during read/write...</span>
|
|
|
132 119 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
133 120
|
|
|
134 121 <span class="c"># Initialize parameters for read...</span>
|
|
|
135 122 <span class="i">$This</span><span class="i">->_InitializeFingerprintsFPFileIORead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
136 123
|
|
|
137 124 <span class="c"># Initialize parameters for write...</span>
|
|
|
138 125 <span class="i">$This</span><span class="i">->_InitializeFingerprintsFPFileIOWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
139 126
|
|
|
140 127 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
141 128 <span class="s">}</span>
|
|
|
142 129
|
|
|
143 130 <span class="c"># Initialize class ...</span>
|
|
|
144 <a name="_InitializeClass-"></a> 131 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span>
|
|
|
145 132 <span class="c">#Class name...</span>
|
|
|
146 133 <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span>
|
|
|
147 134
|
|
|
148 135 <span class="s">}</span>
|
|
|
149 136
|
|
|
150 137 <span class="c"># Initialize object data for reading fingerprints FP file...</span>
|
|
|
151 138 <span class="c">#</span>
|
|
|
152 <a name="_InitializeFingerprintsFPFileIORead-"></a> 139 <span class="k">sub </span><span class="m">_InitializeFingerprintsFPFileIORead</span> <span class="s">{</span>
|
|
|
153 140 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
154 141
|
|
|
155 142 <span class="c"># Header data keys and values...</span>
|
|
|
156 143 <span class="c">#</span>
|
|
|
157 144 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeys</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
158 145 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
159 146 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">CannonicalHeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
160 147
|
|
|
161 148 <span class="c"># By default, the fingerprints data is assumed to be valid and no validation is</span>
|
|
|
162 149 <span class="c"># performed before generating fingerprints objects...</span>
|
|
|
163 150 <span class="c">#</span>
|
|
|
164 151 <span class="i">$This</span>->{<span class="w">ValidateData</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
165 152
|
|
|
166 153 <span class="c"># Level of detail to print during validation of data for invalid or missing data...</span>
|
|
|
167 154 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
168 155
|
|
|
169 156 <span class="c"># Number of missing and invalid fingerprints string data lines...</span>
|
|
|
170 157 <span class="i">$This</span>->{<span class="w">NumOfLinesWithMissingData</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
171 158 <span class="i">$This</span>->{<span class="w">NumOfLinesWithInvalidData</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
172 159
|
|
|
173 160 <span class="c"># Compound ID for current fingerprints string...</span>
|
|
|
174 161 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
175 162
|
|
|
176 163 <span class="c"># Status of data in fingerprints FP file...</span>
|
|
|
177 164 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
178 165 <span class="i">$This</span>->{<span class="w">ValidRequiredHeaderDataKeys</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
179 166 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
180 167
|
|
|
181 168 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
182 169 <span class="s">}</span>
|
|
|
183 170
|
|
|
184 171 <span class="c"># Initialize object data for writing fingerprints FP file...</span>
|
|
|
185 172 <span class="c">#</span>
|
|
|
186 <a name="_InitializeFingerprintsFPFileIOWrite-"></a> 173 <span class="k">sub </span><span class="m">_InitializeFingerprintsFPFileIOWrite</span> <span class="s">{</span>
|
|
|
187 174 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
188 175
|
|
|
189 176 <span class="c"># Fingerprints bit vector string format...</span>
|
|
|
190 177 <span class="c">#</span>
|
|
|
191 178 <span class="c"># Possible values: BinaryString or HexadecimalString [Default]</span>
|
|
|
192 179 <span class="c">#</span>
|
|
|
193 180 <span class="c"># Default BitStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat.</span>
|
|
|
194 181 <span class="c">#</span>
|
|
|
195 182 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
196 183
|
|
|
197 184 <span class="c"># Bits order in fingerprints bit vector string...</span>
|
|
|
198 185 <span class="c">#</span>
|
|
|
199 186 <span class="c"># Ascending - First bit in each byte as the lowest bit [Default]</span>
|
|
|
200 187 <span class="c"># Descending - First bit in each byte as the highest bit</span>
|
|
|
201 188 <span class="c">#</span>
|
|
|
202 189 <span class="c"># Default BitsOrder is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder.</span>
|
|
|
203 190 <span class="c">#</span>
|
|
|
204 191 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
205 192
|
|
|
206 193 <span class="c"># Fingerprints vector string format...</span>
|
|
|
207 194 <span class="c">#</span>
|
|
|
208 195 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span>
|
|
|
209 196 <span class="c">#</span>
|
|
|
210 197 <span class="c"># Default VectorStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat.</span>
|
|
|
211 198 <span class="c"># For fingerprints vector object containing vector NumericalValues, it corresponds to IDsAndValuesString; otherwise,</span>
|
|
|
212 199 <span class="c"># it's set to ValuesString.</span>
|
|
|
213 200 <span class="c">#</span>
|
|
|
214 201 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
215 202
|
|
|
216 203 <span class="c"># Overwriting existing file...</span>
|
|
|
217 204 <span class="i">$This</span>->{<span class="w">Overwrite</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
218 205
|
|
|
219 206 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
220 207 <span class="s">}</span>
|
|
|
221 208
|
|
|
222 209 <span class="c"># Initialize object values...</span>
|
|
|
223 <a name="_InitializeFingerprintsFPFileIOProperties-"></a> 210 <span class="k">sub </span><span class="m">_InitializeFingerprintsFPFileIOProperties</span> <span class="s">{</span>
|
|
|
224 211 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
225 212
|
|
|
226 213 <span class="c"># All other property names and values along with all Set/Get<PropertyName> methods</span>
|
|
|
227 214 <span class="c"># are implemented on-demand using ObjectProperty class.</span>
|
|
|
228 215
|
|
|
229 216 <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span>
|
|
|
230 217 <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span> <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span>
|
|
|
231 218 <span class="i">$MethodName</span> = <span class="q">"Set${Name}"</span><span class="sc">;</span>
|
|
|
232 219 <span class="i">$This</span><span class="i">->$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
|
|
|
233 220 <span class="s">}</span>
|
|
|
234 221
|
|
|
235 222 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
236 223 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying file name..."</span><span class="sc">;</span>
|
|
|
237 224 <span class="s">}</span>
|
|
|
238 225
|
|
|
239 226 <span class="c"># Make sure it's a fingerprints file...</span>
|
|
|
240 227 <span class="i">$Name</span> = <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="sc">;</span>
|
|
|
241 228 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->IsFingerprintsFPFile</span><span class="s">(</span><span class="i">$Name</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
242 229 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $Name, doesn't appear to be fingerprints format..."</span><span class="sc">;</span>
|
|
|
243 230 <span class="s">}</span>
|
|
|
244 231
|
|
|
245 232 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^Read$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
246 233 <span class="i">$This</span><span class="i">->_InitializeFingerprintsFPFileIOReadProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
|
|
|
247 234 <span class="s">}</span>
|
|
|
248 235 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^(Write|Append)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
249 236 <span class="i">$This</span><span class="i">->_InitializeFingerprintsFPFileIOWriteProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
|
|
|
250 237 <span class="s">}</span>
|
|
|
251 238
|
|
|
252 239 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
253 240 <span class="s">}</span>
|
|
|
254 241
|
|
|
255 242 <span class="c"># Initialize object properties for reading fingerprints FP file...</span>
|
|
|
256 243 <span class="c">#</span>
|
|
|
257 <a name="_InitializeFingerprintsFPFileIOReadProperties-"></a> 244 <span class="k">sub </span><span class="m">_InitializeFingerprintsFPFileIOReadProperties</span> <span class="s">{</span>
|
|
|
258 245 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
259 246
|
|
|
260 247 <span class="c"># Set default value for FingerprintsStringMode...</span>
|
|
|
261 248 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
262 249 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span>
|
|
|
263 250 <span class="s">}</span>
|
|
|
264 251
|
|
|
265 252 <span class="i">$This</span><span class="i">->_PrepareForReadingFingerprintsFPFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
266 253
|
|
|
267 254 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
268 255 <span class="s">}</span>
|
|
|
269 256
|
|
|
270 257 <span class="c"># Initialize object properties for writing fingerprints FP file...</span>
|
|
|
271 258 <span class="c">#</span>
|
|
|
272 <a name="_InitializeFingerprintsFPFileIOWriteProperties-"></a> 259 <span class="k">sub </span><span class="m">_InitializeFingerprintsFPFileIOWriteProperties</span> <span class="s">{</span>
|
|
|
273 260 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
274 261
|
|
|
275 262 <span class="c"># Check FingerprintsStringMode value...</span>
|
|
|
276 263 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
277 264 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying FingerprintsStringMode..."</span><span class="sc">;</span>
|
|
|
278 265 <span class="s">}</span>
|
|
|
279 266
|
|
|
280 267 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} !~ <span class="q">/^(FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
281 268 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: FingerprintsStringMode value, $This->{FingerprintsStringMode}, is not valid; Supported values for write/append: FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span>
|
|
|
282 269 <span class="s">}</span>
|
|
|
283 270
|
|
|
284 271 <span class="i">$This</span><span class="i">->_PrepareForWritingFingerprintsFPFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
285 272
|
|
|
286 273 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
287 274 <span class="s">}</span>
|
|
|
288 275
|
|
|
289 276 <span class="c"># Set FingerprintsStringMode...</span>
|
|
|
290 277 <span class="c">#</span>
|
|
|
291 <a name="SetFingerprintsStringMode-"></a> 278 <span class="k">sub </span><span class="m">SetFingerprintsStringMode</span> <span class="s">{</span>
|
|
|
292 279 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
293 280
|
|
|
294 281 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span>
|
|
|
295 282 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span>
|
|
|
296 283 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span>
|
|
|
297 284
|
|
|
298 285 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(AutoDetect|FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
299 286 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetFingerprintsStringMode: FingerprintsStringMode value, $Value, is not valid; Supported values: AutoDetect, FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span>
|
|
|
300 287 <span class="s">}</span>
|
|
|
301 288
|
|
|
302 289 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
303 290
|
|
|
304 291 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
305 292 <span class="s">}</span>
|
|
|
306 293
|
|
|
307 294 <span class="c"># Set DetailLevel...</span>
|
|
|
308 295 <span class="c">#</span>
|
|
|
309 <a name="SetDetailLevel-"></a> 296 <span class="k">sub </span><span class="m">SetDetailLevel</span> <span class="s">{</span>
|
|
|
310 297 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
311 298
|
|
|
312 299 <span class="k">if</span> <span class="s">(</span>!<span class="i">TextUtil::IsPositiveInteger</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
313 300 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetDetailLevel: DetailLevel value, $Value, is not valid; Supported values: > 0..."</span><span class="sc">;</span>
|
|
|
314 301 <span class="s">}</span>
|
|
|
315 302
|
|
|
316 303 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
317 304
|
|
|
318 305 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
319 306 <span class="s">}</span>
|
|
|
320 307
|
|
|
321 308 <span class="c"># Set BitStringFormat...</span>
|
|
|
322 309 <span class="c">#</span>
|
|
|
323 <a name="SetBitStringFormat-"></a> 310 <span class="k">sub </span><span class="m">SetBitStringFormat</span> <span class="s">{</span>
|
|
|
324 311 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
325 312
|
|
|
326 313 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(BinaryString|HexadecimalString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
327 314 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitStringFormat: BitStringFormat value, $Value, is not valid; Supported values: BinaryString or HexadecimalString..."</span><span class="sc">;</span>
|
|
|
328 315 <span class="s">}</span>
|
|
|
329 316
|
|
|
330 317 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
331 318
|
|
|
332 319 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
333 320 <span class="s">}</span>
|
|
|
334 321
|
|
|
335 322 <span class="c"># Set BitsOrder...</span>
|
|
|
336 323 <span class="c">#</span>
|
|
|
337 <a name="SetBitsOrder-"></a> 324 <span class="k">sub </span><span class="m">SetBitsOrder</span> <span class="s">{</span>
|
|
|
338 325 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
339 326
|
|
|
340 327 <span class="c"># Ascending - First bit in each byte as the lowest bit</span>
|
|
|
341 328 <span class="c"># Descending - First bit in each byte as the highest bit</span>
|
|
|
342 329 <span class="c">#</span>
|
|
|
343 330 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(Ascending|Descending)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
344 331 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitsOrder: FingerprintsStringMode value, $Value, is not valid; Supported values: Ascending or Descending..."</span><span class="sc">;</span>
|
|
|
345 332 <span class="s">}</span>
|
|
|
346 333
|
|
|
347 334 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
348 335
|
|
|
349 336 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
350 337 <span class="s">}</span>
|
|
|
351 338
|
|
|
352 339 <span class="c"># Set compound ID...</span>
|
|
|
353 340 <span class="c">#</span>
|
|
|
354 <a name="SetCompoundID-"></a> 341 <span class="k">sub </span><span class="m">SetCompoundID</span> <span class="s">{</span>
|
|
|
355 342 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
356 343
|
|
|
357 344 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> =~ <span class="q">/ /</span><span class="s">)</span> <span class="s">{</span>
|
|
|
358 345 <span class="i">$Value</span> =~ <span class="q">s/ //g</span><span class="sc">;</span>
|
|
|
359 346 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->SetCompoundID: Spaces are not allowed in compound ID; They have been removed..."</span><span class="sc">;</span>
|
|
|
360 347 <span class="s">}</span>
|
|
|
361 348
|
|
|
362 349 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
363 350
|
|
|
364 351 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
365 352 <span class="s">}</span>
|
|
|
366 353
|
|
|
367 354 <span class="c"># Set VectorStringFormat...</span>
|
|
|
368 355 <span class="c">#</span>
|
|
|
369 <a name="SetVectorStringFormat-"></a> 356 <span class="k">sub </span><span class="m">SetVectorStringFormat</span> <span class="s">{</span>
|
|
|
370 357 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
371 358
|
|
|
372 359 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString</span>
|
|
|
373 360
|
|
|
374 361 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(IDsAndValuesString|IDsAndValuesPairsString|ValuesAndIDsString|ValuesAndIDsPairsString|ValuesString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
375 362 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetVectorStringFormat: FingerprintsStringMode value, $Value, is not valid; Supported values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, or ValuesString..."</span><span class="sc">;</span>
|
|
|
376 363 <span class="s">}</span>
|
|
|
377 364
|
|
|
378 365 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
379 366
|
|
|
380 367 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
381 368 <span class="s">}</span>
|
|
|
382 369
|
|
|
383 370 <span class="c"># Get header data keys or number of header data keys in header data block...</span>
|
|
|
384 371 <span class="c">#</span>
|
|
|
385 <a name="GetHeaderDataKeys-"></a> 372 <span class="k">sub </span><span class="m">GetHeaderDataKeys</span> <span class="s">{</span>
|
|
|
386 373 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
387 374
|
|
|
388 375 <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeys</span>}} <span class="co">:</span> <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeys</span>}}<span class="sc">;</span>
|
|
|
389 376 <span class="s">}</span>
|
|
|
390 377
|
|
|
391 378 <span class="c"># Set header data keys...</span>
|
|
|
392 379 <span class="c">#</span>
|
|
|
393 <a name="SetHeaderDataKeys-"></a> 380 <span class="k">sub </span><span class="m">SetHeaderDataKeys</span> <span class="s">{</span>
|
|
|
394 381 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Keys</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
395 382
|
|
|
396 383 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetHeaderDataKeys: Can't set HeaderDataKeys: Not allowed..."</span><span class="sc">;</span>
|
|
|
397 384
|
|
|
398 385 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
399 386 <span class="s">}</span>
|
|
|
400 387
|
|
|
401 388 <span class="c"># Get header data keys and values hash...</span>
|
|
|
402 389 <span class="c">#</span>
|
|
|
403 <a name="GetHeaderDataKeysAndValues-"></a> 390 <span class="k">sub </span><span class="m">GetHeaderDataKeysAndValues</span> <span class="s">{</span>
|
|
|
404 391 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
405 392
|
|
|
406 393 <span class="k">return</span> <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeysAndValues</span>}}<span class="sc">;</span>
|
|
|
407 394 <span class="s">}</span>
|
|
|
408 395
|
|
|
409 396 <span class="c"># Set header data keys and values hash...</span>
|
|
|
410 397 <span class="c">#</span>
|
|
|
411 <a name="SetHeaderDataKeysAndValues-"></a> 398 <span class="k">sub </span><span class="m">SetHeaderDataKeysAndValues</span> <span class="s">{</span>
|
|
|
412 399 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%KeysAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
413 400
|
|
|
414 401 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetHeaderDataKeysAndValues: Can't set HeaderDataKeysAndValues: Not allowed..."</span><span class="sc">;</span>
|
|
|
415 402
|
|
|
416 403 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
417 404 <span class="s">}</span>
|
|
|
418 405
|
|
|
419 406 <span class="c"># Get required header data keys or number of header data keys in header data block...</span>
|
|
|
420 407 <span class="c">#</span>
|
|
|
421 <a name="GetRequiredHeaderDataKeys-"></a> 408 <span class="k">sub </span><span class="m">GetRequiredHeaderDataKeys</span> <span class="s">{</span>
|
|
|
422 409 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
423 410
|
|
|
424 411 <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}} <span class="co">:</span> <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="sc">;</span>
|
|
|
425 412 <span class="s">}</span>
|
|
|
426 413
|
|
|
427 414 <span class="c"># Set required header data keys...</span>
|
|
|
428 415 <span class="c">#</span>
|
|
|
429 <a name="SetRequiredHeaderDataKeys-"></a> 416 <span class="k">sub </span><span class="m">SetRequiredHeaderDataKeys</span> <span class="s">{</span>
|
|
|
430 417 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Keys</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
431 418
|
|
|
432 419 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetRequiredHeaderDataKeys: Can't set RequiredHeaderDataKeys: Not allowed..."</span><span class="sc">;</span>
|
|
|
433 420
|
|
|
434 421 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
435 422 <span class="s">}</span>
|
|
|
436 423
|
|
|
437 424 <span class="c"># Get required header data keys and values hash...</span>
|
|
|
438 425 <span class="c">#</span>
|
|
|
439 <a name="GetRequiredHeaderDataKeysAndValues-"></a> 426 <span class="k">sub </span><span class="m">GetRequiredHeaderDataKeysAndValues</span> <span class="s">{</span>
|
|
|
440 427 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
441 428
|
|
|
442 429 <span class="k">return</span> <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}}<span class="sc">;</span>
|
|
|
443 430 <span class="s">}</span>
|
|
|
444 431
|
|
|
445 432 <span class="c"># Set required header data keys and values hash...</span>
|
|
|
446 433 <span class="c">#</span>
|
|
|
447 <a name="SetRequiredHeaderDataKeysAndValues-"></a> 434 <span class="k">sub </span><span class="m">SetRequiredHeaderDataKeysAndValues</span> <span class="s">{</span>
|
|
|
448 435 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%KeysAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
449 436
|
|
|
450 437 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetRequiredHeaderDataKeysAndValues: Can't set RequiredHeaderDataKeysAndValues: Not allowed..."</span><span class="sc">;</span>
|
|
|
451 438
|
|
|
452 439 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
453 440 <span class="s">}</span>
|
|
|
454 441
|
|
|
455 442 <span class="c"># Get fingerprints object for current data line...</span>
|
|
|
456 443 <span class="c">#</span>
|
|
|
457 <a name="GetFingerprints-"></a> 444 <span class="k">sub </span><span class="m">GetFingerprints</span> <span class="s">{</span>
|
|
|
458 445 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
459 446
|
|
|
460 447 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="sc">;</span>
|
|
|
461 448 <span class="s">}</span>
|
|
|
462 449
|
|
|
463 450 <span class="c"># Set fingerprints object for current data line...</span>
|
|
|
464 451 <span class="c">#</span>
|
|
|
465 <a name="SetFingerprints-"></a> 452 <span class="k">sub </span><span class="m">SetFingerprints</span> <span class="s">{</span>
|
|
|
466 453 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
467 454
|
|
|
468 455 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span>
|
|
|
469 456
|
|
|
470 457 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
471 458 <span class="s">}</span>
|
|
|
472 459
|
|
|
473 460 <span class="c"># Get fingerprints string for current data line...</span>
|
|
|
474 461 <span class="c">#</span>
|
|
|
475 <a name="GetFingerprintsString-"></a> 462 <span class="k">sub </span><span class="m">GetFingerprintsString</span> <span class="s">{</span>
|
|
|
476 463 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
477 464
|
|
|
478 465 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} ? <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span>
|
|
|
479 466 <span class="s">}</span>
|
|
|
480 467
|
|
|
481 468 <span class="c"># Set fingerprints string for current data line...</span>
|
|
|
482 469 <span class="c">#</span>
|
|
|
483 <a name="SetFingerprintsString-"></a> 470 <span class="k">sub </span><span class="m">SetFingerprintsString</span> <span class="s">{</span>
|
|
|
484 471 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
485 472
|
|
|
486 473 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span>
|
|
|
487 474
|
|
|
488 475 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
489 476 <span class="s">}</span>
|
|
|
490 477
|
|
|
491 478 <span class="c"># Get partial fingerprints string for current data line...</span>
|
|
|
492 479 <span class="c">#</span>
|
|
|
493 <a name="GetPartialFingerprintsString-"></a> 480 <span class="k">sub </span><span class="m">GetPartialFingerprintsString</span> <span class="s">{</span>
|
|
|
494 481 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
495 482
|
|
|
496 483 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} ? <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span>
|
|
|
497 484 <span class="s">}</span>
|
|
|
498 485
|
|
|
499 486 <span class="c"># Set partial fingerprints string for current data line...</span>
|
|
|
500 487 <span class="c">#</span>
|
|
|
501 <a name="SetPartialFingerprintsString-"></a> 488 <span class="k">sub </span><span class="m">SetPartialFingerprintsString</span> <span class="s">{</span>
|
|
|
502 489 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$PartialFingerprintsString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
503 490
|
|
|
504 491 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="i">$PartialFingerprintsString</span><span class="sc">;</span>
|
|
|
505 492
|
|
|
506 493 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
507 494 <span class="s">}</span>
|
|
|
508 495
|
|
|
509 496 <span class="c"># Does fingerprints FP file contain valid data?</span>
|
|
|
510 497 <span class="c">#</span>
|
|
|
511 <a name="IsFingerprintsFileDataValid-"></a> 498 <span class="k">sub </span><span class="m">IsFingerprintsFileDataValid</span> <span class="s">{</span>
|
|
|
512 499 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
513 500
|
|
|
514 501 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">ValidFileData</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
515 502 <span class="s">}</span>
|
|
|
516 503
|
|
|
517 504 <span class="c"># Does current data line contains valid fingerprints object data?</span>
|
|
|
518 505 <span class="c">#</span>
|
|
|
519 <a name="IsFingerprintsDataValid-"></a> 506 <span class="k">sub </span><span class="m">IsFingerprintsDataValid</span> <span class="s">{</span>
|
|
|
520 507 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
521 508
|
|
|
522 509 <span class="k">return</span> <span class="k">defined</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
523 510 <span class="s">}</span>
|
|
|
524 511
|
|
|
525 512 <span class="c"># Check presence of a header data key...</span>
|
|
|
526 513 <span class="c">#</span>
|
|
|
527 <a name="IsHeaderDataKeyPresent-"></a> 514 <span class="k">sub </span><span class="m">IsHeaderDataKeyPresent</span> <span class="s">{</span>
|
|
|
528 515 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Key</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
529 516 <span class="k">my</span><span class="s">(</span><span class="i">$CannonicalKey</span><span class="s">)</span><span class="sc">;</span>
|
|
|
530 517
|
|
|
531 518 <span class="i">$CannonicalKey</span> = <span class="k">lc</span> <span class="i">$Key</span><span class="sc">;</span>
|
|
|
532 519
|
|
|
533 520 <span class="k">return</span> <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">CannonicalHeaderDataKeysAndValues</span>}{<span class="i">$CannonicalKey</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
534 521 <span class="s">}</span>
|
|
|
535 522
|
|
|
536 523 <span class="c"># Get value of header data key...</span>
|
|
|
537 524 <span class="c">#</span>
|
|
|
538 <a name="GetHeaderDataKeyValue-"></a> 525 <span class="k">sub </span><span class="m">GetHeaderDataKeyValue</span> <span class="s">{</span>
|
|
|
539 526 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Key</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
540 527 <span class="k">my</span><span class="s">(</span><span class="i">$CannonicalKey</span><span class="s">)</span><span class="sc">;</span>
|
|
|
541 528
|
|
|
542 529 <span class="i">$CannonicalKey</span> = <span class="k">lc</span> <span class="i">$Key</span><span class="sc">;</span>
|
|
|
543 530
|
|
|
544 531 <span class="k">return</span> <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">CannonicalHeaderDataKeysAndValues</span>}{<span class="i">$CannonicalKey</span>} ? <span class="i">$This</span>->{<span class="w">CannonicalHeaderDataKeysAndValues</span>}{<span class="i">$CannonicalKey</span>} <span class="co">:</span> <span class="k">undef</span><span class="sc">;</span>
|
|
|
545 532 <span class="s">}</span>
|
|
|
546 533
|
|
|
547 534 <span class="c">#</span>
|
|
|
548 535 <span class="c"># Read next available fingerprints line, process it and generate appropriate fingerprints</span>
|
|
|
549 536 <span class="c"># objects...</span>
|
|
|
550 537 <span class="c">#</span>
|
|
|
551 <a name="Read-"></a> 538 <span class="k">sub </span><span class="m">Read</span> <span class="s">{</span>
|
|
|
552 539 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
553 540
|
|
|
554 541 <span class="c"># Read data line...</span>
|
|
|
555 542 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ReadDataLine</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
556 543 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span>
|
|
|
557 544 <span class="s">}</span>
|
|
|
558 545
|
|
|
559 546 <span class="c"># No need to process invalid FP file with invalid data...</span>
|
|
|
560 547 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">ValidFileData</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
561 548 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
562 549 <span class="i">$This</span>->{<span class="w">NumOfLinesWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
563 550 <span class="s">}</span>
|
|
|
564 551 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
565 552 <span class="s">}</span>
|
|
|
566 553
|
|
|
567 554 <span class="c"># Perform data validation...</span>
|
|
|
568 555 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
569 556 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ValidateReadDataLine</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
570 557 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
571 558 <span class="s">}</span>
|
|
|
572 559 <span class="s">}</span>
|
|
|
573 560
|
|
|
574 561 <span class="c"># Check again to handle problematic data for non-validated data lines...</span>
|
|
|
575 562 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
576 563 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
577 564 <span class="s">}</span>
|
|
|
578 565
|
|
|
579 566 <span class="c"># Generate fingeprints object...</span>
|
|
|
580 567 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
581 568
|
|
|
582 569 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span>
|
|
|
583 570 <span class="i">$This</span><span class="i">->_GenerateCompoundID</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
584 571
|
|
|
585 572 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
586 573 <span class="s">}</span>
|
|
|
587 574
|
|
|
588 575 <span class="c"># Read next available fingerprints line, process it and generate appropriate fingerprints</span>
|
|
|
589 576 <span class="c"># objects...</span>
|
|
|
590 577 <span class="c">#</span>
|
|
|
591 <a name="Next-"></a> 578 <span class="k">sub </span><span class="m">Next</span> <span class="s">{</span>
|
|
|
592 579 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
593 580
|
|
|
594 581 <span class="k">return</span> <span class="i">$This</span><span class="i">->Read</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
595 582 <span class="s">}</span>
|
|
|
596 583
|
|
|
597 584 <span class="c"># Read fingerprints data line line...</span>
|
|
|
598 585 <span class="c">#</span>
|
|
|
599 <a name="_ReadDataLine-"></a> 586 <span class="k">sub </span><span class="m">_ReadDataLine</span> <span class="s">{</span>
|
|
|
600 587 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
601 588
|
|
|
602 589 <span class="c"># Initialize data for current line...</span>
|
|
|
603 590 <span class="i">$This</span><span class="i">->_InitializeReadDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
604 591
|
|
|
605 592 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
606 593 <span class="c"># Get first data line...</span>
|
|
|
607 594 <span class="i">$This</span><span class="i">->_ProcessFirstDataLineRead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
608 595 <span class="s">}</span>
|
|
|
609 596 <span class="k">else</span> <span class="s">{</span>
|
|
|
610 597 <span class="c"># Get next data line...</span>
|
|
|
611 598 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
612 599 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
613 600 <span class="s">}</span>
|
|
|
614 601
|
|
|
615 602 <span class="c"># Is it end of file?</span>
|
|
|
616 603 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">DataLine</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
617 604 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
618 605 <span class="s">}</span>
|
|
|
619 606
|
|
|
620 607 <span class="c"># Process data line to retrieve compound ID and fingerprints string information...</span>
|
|
|
621 608 <span class="i">$This</span><span class="i">->_ProcessDataLineRead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
622 609
|
|
|
623 610 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
624 611 <span class="s">}</span>
|
|
|
625 612
|
|
|
626 613 <span class="c"># Process data line to retrieve compound ID and fingerprints string information...</span>
|
|
|
627 614 <span class="c">#</span>
|
|
|
628 <a name="_ProcessDataLineRead-"></a> 615 <span class="k">sub </span><span class="m">_ProcessDataLineRead</span> <span class="s">{</span>
|
|
|
629 616 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
630 617 <span class="k">my</span><span class="s">(</span><span class="i">$CompoundID</span><span class="cm">,</span> <span class="i">$PartialFingerprintsString</span><span class="s">)</span><span class="sc">;</span>
|
|
|
631 618
|
|
|
632 619 <span class="s">(</span><span class="i">$CompoundID</span><span class="cm">,</span> <span class="i">$PartialFingerprintsString</span><span class="s">)</span> = <span class="i">$This</span>->{<span class="w">DataLine</span>} =~ <span class="q">/^(.*?)[ ]+(.*?)$/</span><span class="sc">;</span>
|
|
|
633 620
|
|
|
634 621 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">defined</span><span class="s">(</span><span class="i">$CompoundID</span><span class="s">)</span> && <span class="k">defined</span><span class="s">(</span><span class="i">$PartialFingerprintsString</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
635 622 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
636 623 <span class="s">}</span>
|
|
|
637 624
|
|
|
638 625 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="i">$CompoundID</span><span class="sc">;</span>
|
|
|
639 626 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="i">$PartialFingerprintsString</span><span class="sc">;</span>
|
|
|
640 627
|
|
|
641 628 <span class="c"># Set up fingerprints string...</span>
|
|
|
642 629 <span class="i">$This</span><span class="i">->_GenerateFingerprintsStringFromPartialFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
643 630
|
|
|
644 631 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
645 632 <span class="s">}</span>
|
|
|
646 633
|
|
|
647 634 <span class="c"># Initialize data line for reading...</span>
|
|
|
648 635 <span class="c">#</span>
|
|
|
649 <a name="_InitializeReadDataLine-"></a> 636 <span class="k">sub </span><span class="m">_InitializeReadDataLine</span> <span class="s">{</span>
|
|
|
650 637 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
651 638
|
|
|
652 639 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
653 640 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
654 641
|
|
|
655 642 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
656 643
|
|
|
657 644 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
658 645 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
659 646
|
|
|
660 647 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
661 648 <span class="s">}</span>
|
|
|
662 649
|
|
|
663 650 <span class="c"># Validate fingerprints string data line...</span>
|
|
|
664 651 <span class="c">#</span>
|
|
|
665 <a name="_ValidateReadDataLine-"></a> 652 <span class="k">sub </span><span class="m">_ValidateReadDataLine</span> <span class="s">{</span>
|
|
|
666 653 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
667 654
|
|
|
668 655 <span class="c"># Check for missing data...</span>
|
|
|
669 656 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundID</span>} && <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
670 657 <span class="c"># Missing data...</span>
|
|
|
671 658 <span class="i">$This</span>->{<span class="w">NumOfLinesWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
672 659 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span>
|
|
|
673 660 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains no fingerprints data: $This->{DataLine}..."</span><span class="sc">;</span>
|
|
|
674 661 <span class="s">}</span>
|
|
|
675 662 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
|
|
|
676 663 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains no fingerprints data..."</span><span class="sc">;</span>
|
|
|
677 664 <span class="s">}</span>
|
|
|
678 665 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
679 666 <span class="s">}</span>
|
|
|
680 667
|
|
|
681 668 <span class="c"># Check for invalid data...</span>
|
|
|
682 669 <span class="k">my</span><span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span><span class="sc">;</span>
|
|
|
683 670
|
|
|
684 671 <span class="i">$InvalidFingerprintsData</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
685 672 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
686 673 <span class="i">$InvalidFingerprintsData</span> = <span class="i">Fingerprints::FingerprintsStringUtil::AreFingerprintsStringValuesValid</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> ? <span class="n">0</span> <span class="co">:</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
687 674 <span class="s">}</span>
|
|
|
688 675 <span class="k">else</span> <span class="s">{</span>
|
|
|
689 676 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
690 677 <span class="s">}</span>
|
|
|
691 678
|
|
|
692 679 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span> <span class="s">{</span>
|
|
|
693 680 <span class="i">$This</span>->{<span class="w">NumOfLinesWithInvalidData</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
694 681 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span>
|
|
|
695 682 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains invalid fingerprints data: $This->{DataLine}..."</span><span class="sc">;</span>
|
|
|
696 683 <span class="s">}</span>
|
|
|
697 684 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
|
|
|
698 685 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadDataLine: Data line number $This->{LineNum} contains invalid fingerprints data..."</span><span class="sc">;</span>
|
|
|
699 686 <span class="s">}</span>
|
|
|
700 687 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
701 688 <span class="s">}</span>
|
|
|
702 689
|
|
|
703 690 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
704 691 <span class="s">}</span>
|
|
|
705 692
|
|
|
706 693 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span>
|
|
|
707 <a name="_GenerateCompoundID-"></a> 694 <span class="k">sub </span><span class="m">_GenerateCompoundID</span> <span class="s">{</span>
|
|
|
708 695 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
709 696
|
|
|
710 697 <span class="c"># Set fingerprints ID...</span>
|
|
|
711 698 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
712 699 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="i">->SetID</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundID</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
713 700 <span class="s">}</span>
|
|
|
714 701
|
|
|
715 702 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
716 703 <span class="s">}</span>
|
|
|
717 704
|
|
|
718 705 <span class="c"># Process first read...</span>
|
|
|
719 706 <span class="c">#</span>
|
|
|
720 <a name="_ProcessFirstDataLineRead-"></a> 707 <span class="k">sub </span><span class="m">_ProcessFirstDataLineRead</span> <span class="s">{</span>
|
|
|
721 708 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
722 709 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="s">)</span><span class="sc">;</span>
|
|
|
723 710
|
|
|
724 711 <span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
725 712
|
|
|
726 713 <span class="c"># Skip over header data lines and collect first data line...</span>
|
|
|
727 714
|
|
|
728 715 <span class="j">LINE:</span> <span class="k">while</span> <span class="s">(</span><span class="i">$Line</span> = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
729 716 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
730 717
|
|
|
731 718 <span class="c"># Is it a header data line?</span>
|
|
|
732 719 <span class="k">if</span> <span class="s">(</span><span class="i">$Line</span> =~ <span class="q">/^#/</span><span class="s">)</span> <span class="s">{</span>
|
|
|
733 720 <span class="k">next</span> <span class="j">LINE</span><span class="sc">;</span>
|
|
|
734 721 <span class="s">}</span>
|
|
|
735 722 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="i">$Line</span><span class="sc">;</span>
|
|
|
736 723 <span class="k">last</span> <span class="j">LINE</span><span class="sc">;</span>
|
|
|
737 724 <span class="s">}</span>
|
|
|
738 725
|
|
|
739 726 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
740 727 <span class="s">}</span>
|
|
|
741 728
|
|
|
742 729 <span class="c"># Get ready for reading fingerprints FP file...</span>
|
|
|
743 730 <span class="c">#</span>
|
|
|
744 <a name="_PrepareForReadingFingerprintsFPFileData-"></a> 731 <span class="k">sub </span><span class="m">_PrepareForReadingFingerprintsFPFileData</span> <span class="s">{</span>
|
|
|
745 732 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
746 733
|
|
|
747 734 <span class="c"># Retrieve FP file data headers information....</span>
|
|
|
748 735 <span class="i">$This</span><span class="i">->_RetrieveFPFileDataHeaders</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
749 736
|
|
|
750 737 <span class="c"># Validate header data keys and values information...</span>
|
|
|
751 738 <span class="i">$This</span><span class="i">->_ValidateReadHeaderDataKeysAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
752 739
|
|
|
753 740 <span class="c"># Validate fingeprints string mode information...</span>
|
|
|
754 741 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidRequiredHeaderDataKeys</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
755 742 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsStringMode</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
756 743 <span class="s">}</span>
|
|
|
757 744
|
|
|
758 745 <span class="c"># Set status of FP file data...</span>
|
|
|
759 746 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidRequiredHeaderDataKeys</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
760 747
|
|
|
761 748 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
762 749 <span class="s">}</span>
|
|
|
763 750
|
|
|
764 751 <span class="c"># Retrieve information about fingerprints date header in FP file...</span>
|
|
|
765 752 <span class="c">#</span>
|
|
|
766 <a name="_RetrieveFPFileDataHeaders-"></a> 753 <span class="k">sub </span><span class="m">_RetrieveFPFileDataHeaders</span> <span class="s">{</span>
|
|
|
767 754 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
768 755 <span class="k">my</span><span class="s">(</span><span class="i">$FPFile</span><span class="cm">,</span> <span class="i">$Line</span><span class="cm">,</span> <span class="i">$Index</span><span class="cm">,</span> <span class="i">$KeyValuePair</span><span class="cm">,</span> <span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$KeyValueDelimiter</span><span class="cm">,</span> <span class="i">$KeyValuePairDelimiter</span><span class="cm">,</span> <span class="i">@LineKeyValuePairs</span><span class="s">)</span><span class="sc">;</span>
|
|
|
769 756
|
|
|
770 757 <span class="i">$FPFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span>
|
|
|
771 758
|
|
|
772 759 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$FPFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
773 760 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_RetrieveFPFileDataHeaders: File, $FPFile, doesn't exist..."</span><span class="sc">;</span>
|
|
|
774 761 <span class="s">}</span>
|
|
|
775 762
|
|
|
776 763 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span> <span class="w">FPFILE</span><span class="cm">,</span> <span class="q">"$FPFile"</span><span class="s">)</span> <span class="s">{</span>
|
|
|
777 764 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_RetrieveFPFileDataHeaders: Couldn't open input FP file $FPFile: $! ..."</span><span class="sc">;</span>
|
|
|
778 765 <span class="s">}</span>
|
|
|
779 766
|
|
|
780 767 <span class="c"># Process header key/value pair data...</span>
|
|
|
781 768 <span class="c">#</span>
|
|
|
782 769 <span class="i">$KeyValueDelimiter</span> = <span class="q">'='</span><span class="sc">;</span>
|
|
|
783 770 <span class="i">$KeyValuePairDelimiter</span> = <span class="q">';'</span><span class="sc">;</span>
|
|
|
784 771
|
|
|
785 772 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeys</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
786 773 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
787 774 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">CannonicalHeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
788 775
|
|
|
789 776 <span class="j">LINE:</span> <span class="k">while</span> <span class="s">(</span><span class="i">$Line</span> = <span class="i">TextUtil::GetTextLine</span><span class="s">(</span>\<span class="i">*FPFILE</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
790 777 <span class="c"># Is it a key/value pairs line?</span>
|
|
|
791 778 <span class="k">if</span> <span class="s">(</span><span class="i">$Line</span> !~ <span class="q">/^#/</span><span class="s">)</span> <span class="s">{</span>
|
|
|
792 779 <span class="k">last</span> <span class="j">LINE</span><span class="sc">;</span>
|
|
|
793 780 <span class="s">}</span>
|
|
|
794 781
|
|
|
795 782 <span class="c"># Take out starting hash mark before processing key/value pairs...</span>
|
|
|
796 783 <span class="i">$Line</span> =~ <span class="q">s/^#//</span><span class="sc">;</span>
|
|
|
797 784 <span class="k">if</span> <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$Line</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
798 785 <span class="k">next</span> <span class="j">LINE</span><span class="sc">;</span>
|
|
|
799 786 <span class="s">}</span>
|
|
|
800 787
|
|
|
801 788 <span class="i">@LineKeyValuePairs</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
802 789
|
|
|
803 790 <span class="k">for</span> <span class="i">$KeyValuePair</span> <span class="s">(</span><span class="k">split</span> <span class="q">"$KeyValuePairDelimiter"</span><span class="cm">,</span> <span class="i">$Line</span><span class="s">)</span> <span class="s">{</span>
|
|
|
804 791 <span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">split</span> <span class="q">"$KeyValueDelimiter"</span><span class="cm">,</span> <span class="i">$KeyValuePair</span><span class="sc">;</span>
|
|
|
805 792
|
|
|
806 793 <span class="i">$Key</span> = <span class="k">defined</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span> ? <span class="i">TextUtil::RemoveLeadingAndTrailingWhiteSpaces</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span> <span class="co">:</span> <span class="q">''</span><span class="sc">;</span>
|
|
|
807 794 <span class="i">$Value</span> = <span class="k">defined</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span> ? <span class="i">TextUtil::RemoveLeadingAndTrailingWhiteSpaces</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span> <span class="co">:</span> <span class="q">''</span><span class="sc">;</span>
|
|
|
808 795
|
|
|
809 796 <span class="k">if</span> <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span> || <span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
810 797 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_RetrieveFPFileDataHeaders: Data header line containing \"Key = Value\" pairs is not valid: It must contain even number of \"Key = Value\" pairs with valid values. Ignoring data header line: \"$Line\"..."</span><span class="sc">;</span>
|
|
|
811 798 <span class="k">next</span> <span class="j">LINE</span><span class="sc">;</span>
|
|
|
812 799 <span class="s">}</span>
|
|
|
813 800 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">HeaderDataKeys</span>}}<span class="cm">,</span> <span class="i">$Key</span><span class="sc">;</span>
|
|
|
814 801 <span class="k">push</span> <span class="i">@LineKeyValuePairs</span><span class="cm">,</span> <span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
|
|
|
815 802 <span class="s">}</span>
|
|
|
816 803
|
|
|
817 804 <span class="k">for</span> <span class="s">(</span><span class="i">$Index</span> = <span class="n">0</span><span class="sc">;</span> <span class="i">$Index</span> < <span class="i">$#LineKeyValuePairs</span><span class="sc">;</span> <span class="i">$Index</span> += <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
|
|
|
818 805 <span class="i">$Key</span> = <span class="i">$LineKeyValuePairs</span>[<span class="i">$Index</span>]<span class="sc">;</span> <span class="i">$Value</span> = <span class="i">$LineKeyValuePairs</span>[<span class="i">$Index</span> + <span class="n">1</span>]<span class="sc">;</span>
|
|
|
819 806
|
|
|
820 807 <span class="i">$This</span>->{<span class="w">HeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
821 808 <span class="i">$This</span>->{<span class="w">CannonicalHeaderDataKeysAndValues</span>}{<span class="k">lc</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
822 809 <span class="s">}</span>
|
|
|
823 810 <span class="s">}</span>
|
|
|
824 811 <span class="k">close</span> <span class="w">FPFILE</span><span class="sc">;</span>
|
|
|
825 812
|
|
|
826 813 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
827 814 <span class="s">}</span>
|
|
|
828 815
|
|
|
829 816 <span class="c"># Validate header data and keys...</span>
|
|
|
830 817 <span class="c">#</span>
|
|
|
831 <a name="_ValidateReadHeaderDataKeysAndValues-"></a> 818 <span class="k">sub </span><span class="m">_ValidateReadHeaderDataKeysAndValues</span> <span class="s">{</span>
|
|
|
832 819 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
833 820 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsStringType</span><span class="cm">,</span> <span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">@RequiredHeaderDataKeys</span><span class="s">)</span><span class="sc">;</span>
|
|
|
834 821
|
|
|
835 822 <span class="i">$This</span>->{<span class="w">ValidRequiredHeaderDataKeys</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
836 823 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
837 824
|
|
|
838 825 <span class="c"># Is FingerprintsStringType key is present?</span>
|
|
|
839 826 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->IsHeaderDataKeyPresent</span><span class="s">(</span><span class="q">'FingerprintsStringType'</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
840 827 <span class="w">carp</span> <span class="q">"carp: ${ClassName}->_ValidateReadHeaderDataKeysAndValues: FingerprintsStringType data header key is missing in fingerprints file..."</span><span class="sc">;</span>
|
|
|
841 828 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
842 829 <span class="s">}</span>
|
|
|
843 830 <span class="i">$FingerprintsStringType</span> = <span class="i">$This</span><span class="i">->GetHeaderDataKeyValue</span><span class="s">(</span><span class="q">'FingerprintsStringType'</span><span class="s">)</span><span class="sc">;</span>
|
|
|
844 831
|
|
|
845 832 <span class="c"># Are all required data header keys present?</span>
|
|
|
846 833 <span class="c">#</span>
|
|
|
847 834 <span class="i">@RequiredHeaderDataKeys</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
848 835
|
|
|
849 836 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> =~ <span class="q">/^(FingerprintsBitVector|FingerprintsVector)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
850 837 <span class="k">push</span> <span class="i">@RequiredHeaderDataKeys</span><span class="cm">,</span> <span class="i">$This</span><span class="i">->_GetRequiredHeaderDataKeys</span><span class="s">(</span><span class="i">$FingerprintsStringType</span><span class="s">)</span><span class="sc">;</span>
|
|
|
851 838 <span class="s">}</span>
|
|
|
852 839 <span class="k">else</span> <span class="s">{</span>
|
|
|
853 840 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadHeaderDataKeysAndValues: FingerprintsStringType data header key value, $FingerprintsStringType, is not valid. SUpported values: FingerprintsBitVector or FingerprintsVector..."</span><span class="sc">;</span>
|
|
|
854 841 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
855 842 <span class="s">}</span>
|
|
|
856 843
|
|
|
857 844 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@RequiredHeaderDataKeys</span><span class="s">)</span> <span class="s">{</span>
|
|
|
858 845 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->IsHeaderDataKeyPresent</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
859 846 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_ValidateReadHeaderDataKeysAndValues: Requires data header key, $Key, is missing in fingerprints file..."</span><span class="sc">;</span>
|
|
|
860 847 <span class="s">}</span>
|
|
|
861 848 <span class="s">}</span>
|
|
|
862 849
|
|
|
863 850 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="cm">,</span> <span class="i">@RequiredHeaderDataKeys</span><span class="sc">;</span>
|
|
|
864 851
|
|
|
865 852 <span class="c"># Are all required data header key values valid?</span>
|
|
|
866 853 <span class="c">#</span>
|
|
|
867 854 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ValidateRequiredHeaderDataKeyValues</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
868 855 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
869 856 <span class="s">}</span>
|
|
|
870 857
|
|
|
871 858 <span class="c"># Process required header key values...</span>
|
|
|
872 859 <span class="c">#</span>
|
|
|
873 860 <span class="i">$This</span><span class="i">->_ProcessRequiredHeaderDataKeyValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
874 861
|
|
|
875 862 <span class="i">$This</span>->{<span class="w">ValidRequiredHeaderDataKeys</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
876 863
|
|
|
877 864 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
878 865 <span class="s">}</span>
|
|
|
879 866
|
|
|
880 867 <span class="c"># Validate data header key values....</span>
|
|
|
881 868 <span class="c">#</span>
|
|
|
882 <a name="_ValidateRequiredHeaderDataKeyValues-"></a> 869 <span class="k">sub </span><span class="m">_ValidateRequiredHeaderDataKeyValues</span> <span class="s">{</span>
|
|
|
883 870 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
884 871 <span class="k">my</span><span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
|
|
|
885 872
|
|
|
886 873 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="s">)</span> <span class="s">{</span>
|
|
|
887 874 <span class="i">$Value</span> = <span class="i">$This</span><span class="i">->GetHeaderDataKeyValue</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span><span class="sc">;</span>
|
|
|
888 875 <span class="j">KEY:</span> <span class="s">{</span>
|
|
|
889 876 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^FingerprintsStringType$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
890 877 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(FingerprintsBitVector|FingerprintsVector)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
891 878 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value, $Value, is not valid. Supported values: FingerprintsBitVector or FingerprintsVector..."</span><span class="sc">;</span>
|
|
|
892 879 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
893 880 <span class="s">}</span>
|
|
|
894 881 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
895 882 <span class="s">}</span>
|
|
|
896 883 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^Size$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
897 884 <span class="k">if</span> <span class="s">(</span>!<span class="i">TextUtil::IsPositiveInteger</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
898 885 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value, $Value, is not valid. Supported values: > 0..."</span><span class="sc">;</span>
|
|
|
899 886 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
900 887 <span class="s">}</span>
|
|
|
901 888 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
902 889 <span class="s">}</span>
|
|
|
903 890 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^BitStringFormat$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
904 891 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(BinaryString|HexadecimalString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
905 892 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value, $Value, is not valid. Supported values: BinaryString or HexadecimalString ..."</span><span class="sc">;</span>
|
|
|
906 893 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
907 894 <span class="s">}</span>
|
|
|
908 895 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
909 896 <span class="s">}</span>
|
|
|
910 897 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^BitsOrder$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
911 898 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(Ascending|Descending)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
912 899 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value, $Value, is not valid. Supported values: Ascending or Descending..."</span><span class="sc">;</span>
|
|
|
913 900 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
914 901 <span class="s">}</span>
|
|
|
915 902 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
916 903 <span class="s">}</span>
|
|
|
917 904 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^VectorStringFormat$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
918 905 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(IDsAndValuesString|IDsAndValuesPairsString|ValuesAndIDsString|ValuesAndIDsPairsString|ValuesString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
919 906 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value, $Value, is not valid. Supported values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, or ValuesString ..."</span><span class="sc">;</span>
|
|
|
920 907 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
921 908 <span class="s">}</span>
|
|
|
922 909 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
923 910 <span class="s">}</span>
|
|
|
924 911 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^VectorValuesType$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
925 912 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(OrderedNumericalValues|NumericalValues|AlphaNumericalValues)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
926 913 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value, $Value, is not valid. Supported values: OrderedNumericalValues, NumericalValues or AlphaNumericalValues..."</span><span class="sc">;</span>
|
|
|
927 914 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
928 915 <span class="s">}</span>
|
|
|
929 916 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
930 917 <span class="s">}</span>
|
|
|
931 918 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^Description$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
932 919 <span class="k">if</span> <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
933 920 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key value is not valid. Supported value: A no-empty text string..."</span><span class="sc">;</span>
|
|
|
934 921 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
935 922 <span class="s">}</span>
|
|
|
936 923 <span class="k">last</span> <span class="j">KEY</span><span class="sc">;</span>
|
|
|
937 924 <span class="s">}</span>
|
|
|
938 925 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateRequiredHeaderDataKeyValues: Required $Key data header key is not not supported..."</span><span class="sc">;</span>
|
|
|
939 926 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
940 927 <span class="s">}</span>
|
|
|
941 928 <span class="s">}</span>
|
|
|
942 929
|
|
|
943 930 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
944 931 <span class="s">}</span>
|
|
|
945 932
|
|
|
946 933 <span class="c"># Process required header key valeues for access during complete fingerprints</span>
|
|
|
947 934 <span class="c"># string generation from a partial fingerprints string specified on fingerprints</span>
|
|
|
948 935 <span class="c"># line...</span>
|
|
|
949 936 <span class="c">#</span>
|
|
|
950 <a name="_ProcessRequiredHeaderDataKeyValues-"></a> 937 <span class="k">sub </span><span class="m">_ProcessRequiredHeaderDataKeyValues</span> <span class="s">{</span>
|
|
|
951 938 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
952 939 <span class="k">my</span><span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">@Keys</span><span class="s">)</span><span class="sc">;</span>
|
|
|
953 940
|
|
|
954 941 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
955 942
|
|
|
956 943 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="s">)</span> <span class="s">{</span>
|
|
|
957 944 <span class="i">$Value</span> = <span class="i">$This</span><span class="i">->GetHeaderDataKeyValue</span><span class="s">(</span><span class="i">$Key</span><span class="s">)</span><span class="sc">;</span>
|
|
|
958 945 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
959 946 <span class="s">}</span>
|
|
|
960 947
|
|
|
961 948 <span class="c"># Setup prefixes for generating fingerprints strings...</span>
|
|
|
962 949 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringPrefix</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
963 950 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringPrefix1</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
964 951 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringPrefix2</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
965 952
|
|
|
966 953 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="w">FingerprintsStringType</span>} =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
967 954 <span class="i">@Keys</span> = <span class="q">qw(FingerprintsStringType Description Size BitStringFormat BitsOrder)</span><span class="sc">;</span>
|
|
|
968 955 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringPrefix</span>} = <span class="i">$This</span><span class="i">->_GenerateFingerprintsPrefixUsingKeys</span><span class="s">(</span><span class="i">@Keys</span><span class="s">)</span><span class="sc">;</span>
|
|
|
969 956 <span class="s">}</span>
|
|
|
970 957 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="w">FingerprintsStringType</span>} =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
971 958 <span class="i">@Keys</span> = <span class="q">qw(FingerprintsStringType Description)</span><span class="sc">;</span>
|
|
|
972 959 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringPrefix1</span>} = <span class="i">$This</span><span class="i">->_GenerateFingerprintsPrefixUsingKeys</span><span class="s">(</span><span class="i">@Keys</span><span class="s">)</span><span class="sc">;</span>
|
|
|
973 960
|
|
|
974 961 <span class="i">@Keys</span> = <span class="q">qw(VectorValuesType VectorStringFormat)</span><span class="sc">;</span>
|
|
|
975 962 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringPrefix2</span>} = <span class="i">$This</span><span class="i">->_GenerateFingerprintsPrefixUsingKeys</span><span class="s">(</span><span class="i">@Keys</span><span class="s">)</span><span class="sc">;</span>
|
|
|
976 963 <span class="s">}</span>
|
|
|
977 964
|
|
|
978 965 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
979 966 <span class="s">}</span>
|
|
|
980 967
|
|
|
981 968 <span class="c"># Generate fingerprints prefix using header keys data...</span>
|
|
|
982 969 <span class="c">#</span>
|
|
|
983 <a name="_GenerateFingerprintsPrefixUsingKeys-"></a> 970 <span class="k">sub </span><span class="m">_GenerateFingerprintsPrefixUsingKeys</span> <span class="s">{</span>
|
|
|
984 971 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Keys</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
985 972 <span class="k">my</span><span class="s">(</span><span class="i">$Delimiter</span><span class="cm">,</span> <span class="i">$Key</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span><span class="sc">;</span>
|
|
|
986 973
|
|
|
987 974 <span class="i">$Delimiter</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingeprintsStringDelimiter</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
988 975
|
|
|
989 976 <span class="i">@Values</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
990 977 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@Keys</span><span class="s">)</span> <span class="s">{</span>
|
|
|
991 978 <span class="k">push</span> <span class="i">@Values</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>}<span class="sc">;</span>
|
|
|
992 979 <span class="s">}</span>
|
|
|
993 980
|
|
|
994 981 <span class="k">return</span> <span class="k">join</span><span class="s">(</span><span class="i">$Delimiter</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span>
|
|
|
995 982 <span class="s">}</span>
|
|
|
996 983
|
|
|
997 984 <span class="c"># Get required header data keys...</span>
|
|
|
998 985 <span class="c">#</span>
|
|
|
999 <a name="_GetRequiredHeaderDataKeys-"></a> 986 <span class="k">sub </span><span class="m">_GetRequiredHeaderDataKeys</span> <span class="s">{</span>
|
|
|
1000 987 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsStringType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1001 988 <span class="k">my</span><span class="s">(</span><span class="i">@RequiredKeys</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1002 989
|
|
|
1003 990 <span class="i">@RequiredKeys</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1004 991
|
|
|
1005 992 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> =~ <span class="q">/FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1006 993 <span class="k">push</span> <span class="i">@RequiredKeys</span><span class="cm">,</span> <span class="q">qw(FingerprintsStringType Description Size BitStringFormat BitsOrder)</span><span class="sc">;</span>
|
|
|
1007 994 <span class="s">}</span>
|
|
|
1008 995 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> =~ <span class="q">/^FingerprintsVector/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1009 996 <span class="k">push</span> <span class="i">@RequiredKeys</span><span class="cm">,</span> <span class="q">qw(FingerprintsStringType Description VectorStringFormat VectorValuesType)</span><span class="sc">;</span>
|
|
|
1010 997 <span class="s">}</span>
|
|
|
1011 998 <span class="k">else</span> <span class="s">{</span>
|
|
|
1012 999 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->GetRequiredHeaderDataKeys: FingerprintsStringType value, $FingerprintsStringType, is not valid. Supported values: FingerprintsBitVector or FingerprintsVector..."</span><span class="sc">;</span>
|
|
|
1013 1000 <span class="s">}</span>
|
|
|
1014 1001
|
|
|
1015 1002 <span class="k">return</span> <span class="i">@RequiredKeys</span><span class="sc">;</span>
|
|
|
1016 1003 <span class="s">}</span>
|
|
|
1017 1004
|
|
|
1018 1005 <span class="c"># Validate fingerprints string mode information...</span>
|
|
|
1019 1006 <span class="c">#</span>
|
|
|
1020 <a name="_ValidateReadFingerprintsStringMode-"></a>1007 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsStringMode</span> <span class="s">{</span>
|
|
|
1021 1008 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1022 1009 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsStringType</span><span class="cm">,</span> <span class="i">$FingerprintsStringDescription</span><span class="cm">,</span> <span class="i">$FingerprintsBitVectorStringMode</span><span class="cm">,</span> <span class="i">$FingerprintsVectorStringMode</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringType</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringDescription</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1023 1010
|
|
|
1024 1011 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1025 1012 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1026 1013 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1027 1014
|
|
|
1028 1015 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
1029 1016 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
1030 1017
|
|
|
1031 1018 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
1032 1019 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
1033 1020
|
|
|
1034 1021 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">''</span><span class="sc">;</span>
|
|
|
1035 1022 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="q">''</span><span class="sc">;</span>
|
|
|
1036 1023
|
|
|
1037 1024 <span class="i">$FingerprintsStringType</span> = <span class="i">$This</span><span class="i">->GetHeaderDataKeyValue</span><span class="s">(</span><span class="q">'FingerprintsStringType'</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1038 1025 <span class="i">$FingerprintsStringDescription</span> = <span class="i">$This</span><span class="i">->GetHeaderDataKeyValue</span><span class="s">(</span><span class="q">'Description'</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1039 1026
|
|
|
1040 1027 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1041 1028 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> !~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1042 1029 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: Fingerprints string data type, $FingerprintsStringType, doesn't correspond to, FingerprintsBitVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span>
|
|
|
1043 1030 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1044 1031 <span class="s">}</span>
|
|
|
1045 1032 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
1046 1033 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsBitVector'</span><span class="sc">;</span>
|
|
|
1047 1034 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsStringDescription</span><span class="sc">;</span>
|
|
|
1048 1035 <span class="s">}</span>
|
|
|
1049 1036 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1050 1037 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> !~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1051 1038 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: Fingerprints string data type, $FingerprintsStringType, doesn't correspond to, FingerprintsVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span>
|
|
|
1052 1039 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1053 1040 <span class="s">}</span>
|
|
|
1054 1041 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
1055 1042 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsVector'</span><span class="sc">;</span>
|
|
|
1056 1043 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsStringDescription</span><span class="sc">;</span>
|
|
|
1057 1044 <span class="s">}</span>
|
|
|
1058 1045 <span class="k">else</span> <span class="s">{</span>
|
|
|
1059 1046 <span class="c"># AutoDetect mode...</span>
|
|
|
1060 1047 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1061 1048 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
1062 1049 <span class="s">}</span>
|
|
|
1063 1050 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsStringType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1064 1051 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
1065 1052 <span class="s">}</span>
|
|
|
1066 1053 <span class="k">else</span> <span class="s">{</span>
|
|
|
1067 1054 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: Fingerprints string data type, $FingerprintsStringType, identified during, AutoDetect, value of \"FingerprintsStringMode\" is not valid; Supported fingerprints types: FingerprintBitVector or FingerprintsVector..."</span><span class="sc">;</span>
|
|
|
1068 1055 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1069 1056 <span class="s">}</span>
|
|
|
1070 1057 <span class="i">$FirstFingerprintsStringType</span> = <span class="i">$FingerprintsStringType</span><span class="sc">;</span>
|
|
|
1071 1058 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsStringDescription</span><span class="sc">;</span>
|
|
|
1072 1059 <span class="s">}</span>
|
|
|
1073 1060
|
|
|
1074 1061 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
1075 1062
|
|
|
1076 1063 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="i">$FingerprintsBitVectorStringMode</span><span class="sc">;</span>
|
|
|
1077 1064 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="i">$FingerprintsVectorStringMode</span><span class="sc">;</span>
|
|
|
1078 1065
|
|
|
1079 1066 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="i">$FirstFingerprintsStringType</span><span class="sc">;</span>
|
|
|
1080 1067 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="i">$FirstFingerprintsStringDescription</span><span class="sc">;</span>
|
|
|
1081 1068
|
|
|
1082 1069 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
1083 1070 <span class="s">}</span>
|
|
|
1084 1071
|
|
|
1085 1072 <span class="c"># Write fingerprints string generated from specified fingerprints - fingerprints-bit vector or</span>
|
|
|
1086 1073 <span class="c"># fingerprints vector - object and other data to FP file...</span>
|
|
|
1087 1074 <span class="c">#</span>
|
|
|
1088 <a name="WriteFingerprints-"></a>1075 <span class="k">sub </span><span class="m">WriteFingerprints</span> <span class="s">{</span>
|
|
|
1089 1076 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$CompoundID</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1090 1077
|
|
|
1091 1078 <span class="c"># Initialize data for current line...</span>
|
|
|
1092 1079 <span class="i">$This</span><span class="i">->_InitializeWriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1093 1080
|
|
|
1094 1081 <span class="c"># Set fingerprints object and compound ID...</span>
|
|
|
1095 1082 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span>
|
|
|
1096 1083 <span class="i">$This</span><span class="i">->SetCompoundID</span><span class="s">(</span><span class="i">$CompoundID</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1097 1084
|
|
|
1098 1085 <span class="c"># Generate fingerprints string...</span>
|
|
|
1099 1086 <span class="i">$This</span><span class="i">->_GenerateFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1100 1087
|
|
|
1101 1088 <span class="c"># Generate partial fingerprints string...</span>
|
|
|
1102 1089 <span class="i">$This</span><span class="i">->_GeneratePartialFingerprintsStringFromFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1103 1090
|
|
|
1104 1091 <span class="c"># Write data line..</span>
|
|
|
1105 1092 <span class="i">$This</span><span class="i">->_WriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1106 1093
|
|
|
1107 1094 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1108 1095 <span class="s">}</span>
|
|
|
1109 1096
|
|
|
1110 1097 <span class="c"># Write fingerprints string and other data to FP file...</span>
|
|
|
1111 1098 <span class="c">#</span>
|
|
|
1112 1099 <span class="c"># Notes:</span>
|
|
|
1113 1100 <span class="c"># o FingerprintsStringMode, BitStringFormat, BitsOrder, VectorStringFormat values</span>
|
|
|
1114 1101 <span class="c"># are ignored during writing of fingerprints and it's written to the file as it is.</span>
|
|
|
1115 1102 <span class="c"># o FingerprintsString is a regular fingerprints string as oppose to a partial fingerprints</span>
|
|
|
1116 1103 <span class="c"># string.</span>
|
|
|
1117 1104 <span class="c">#</span>
|
|
|
1118 <a name="WriteFingerprintsString-"></a>1105 <span class="k">sub </span><span class="m">WriteFingerprintsString</span> <span class="s">{</span>
|
|
|
1119 1106 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="cm">,</span> <span class="i">$CompoundID</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1120 1107
|
|
|
1121 1108 <span class="c"># Initialize data for current line...</span>
|
|
|
1122 1109 <span class="i">$This</span><span class="i">->_InitializeWriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1123 1110
|
|
|
1124 1111 <span class="c"># Set fingerprints string and compound ID...</span>
|
|
|
1125 1112 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span>
|
|
|
1126 1113 <span class="i">$This</span><span class="i">->SetCompoundID</span><span class="s">(</span><span class="i">$CompoundID</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1127 1114
|
|
|
1128 1115 <span class="c"># Generate fingerprints object...</span>
|
|
|
1129 1116 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1130 1117
|
|
|
1131 1118 <span class="c"># Generate partial fingerprints string...</span>
|
|
|
1132 1119 <span class="i">$This</span><span class="i">->_GeneratePartialFingerprintsStringFromFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1133 1120
|
|
|
1134 1121 <span class="c"># Write data line..</span>
|
|
|
1135 1122 <span class="i">$This</span><span class="i">->_WriteDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1136 1123
|
|
|
1137 1124 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1138 1125 <span class="s">}</span>
|
|
|
1139 1126
|
|
|
1140 1127 <span class="c"># Initialize data line for reading...</span>
|
|
|
1141 1128 <span class="c">#</span>
|
|
|
1142 <a name="_InitializeWriteDataLine-"></a>1129 <span class="k">sub </span><span class="m">_InitializeWriteDataLine</span> <span class="s">{</span>
|
|
|
1143 1130 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1144 1131
|
|
|
1145 1132 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1146 1133 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1147 1134
|
|
|
1148 1135 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1149 1136
|
|
|
1150 1137 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1151 1138 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1152 1139
|
|
|
1153 1140 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1154 1141 <span class="s">}</span>
|
|
|
1155 1142
|
|
|
1156 1143 <span class="c"># Write fingerprints data line line...</span>
|
|
|
1157 1144 <span class="c">#</span>
|
|
|
1158 <a name="_WriteDataLine-"></a>1145 <span class="k">sub </span><span class="m">_WriteDataLine</span> <span class="s">{</span>
|
|
|
1159 1146 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1160 1147 <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="cm">,</span> <span class="i">$Line</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1161 1148
|
|
|
1162 1149 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1163 1150 <span class="i">$This</span><span class="i">->_ProcessFirstDataLineWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1164 1151 <span class="s">}</span>
|
|
|
1165 1152
|
|
|
1166 1153 <span class="c"># Write data compound ID along with partial fingerprints string...</span>
|
|
|
1167 1154 <span class="i">$Line</span> = <span class="i">$This</span>->{<span class="w">CompoundID</span>} . <span class="q">' '</span> . <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>}<span class="sc">;</span>
|
|
|
1168 1155
|
|
|
1169 1156 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1170 1157 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span>
|
|
|
1171 1158 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"$Line\n"</span><span class="sc">;</span>
|
|
|
1172 1159
|
|
|
1173 1160 <span class="i">$This</span>->{<span class="w">DataLine</span>} = <span class="i">$Line</span><span class="sc">;</span>
|
|
|
1174 1161
|
|
|
1175 1162 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1176 1163 <span class="s">}</span>
|
|
|
1177 1164
|
|
|
1178 1165 <span class="c"># Process first write...</span>
|
|
|
1179 1166 <span class="c">#</span>
|
|
|
1180 <a name="_ProcessFirstDataLineWrite-"></a>1167 <span class="k">sub </span><span class="m">_ProcessFirstDataLineWrite</span> <span class="s">{</span>
|
|
|
1181 1168 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1182 1169 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1183 1170
|
|
|
1184 1171 <span class="i">$This</span>->{<span class="w">FirstDataLineIO</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1185 1172
|
|
|
1186 1173 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^Write$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1187 1174 <span class="c"># Skip it for append mode...</span>
|
|
|
1188 1175 <span class="i">$This</span><span class="i">->_WritePackageAndTimeStampHeaderKeys</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1189 1176 <span class="i">$This</span><span class="i">->_WriteRequiredHeaderDataKeys</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1190 1177 <span class="s">}</span>
|
|
|
1191 1178
|
|
|
1192 1179 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1193 1180 <span class="s">}</span>
|
|
|
1194 1181
|
|
|
1195 1182 <span class="c"># Write out package and time stamp information...</span>
|
|
|
1196 1183 <span class="c">#</span>
|
|
|
1197 <a name="_WritePackageAndTimeStampHeaderKeys-"></a>1184 <span class="k">sub </span><span class="m">_WritePackageAndTimeStampHeaderKeys</span> <span class="s">{</span>
|
|
|
1198 1185 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1199 1186 <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="cm">,</span> <span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1200 1187
|
|
|
1201 1188 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span>
|
|
|
1202 1189
|
|
|
1203 1190 <span class="c"># Package information...</span>
|
|
|
1204 1191 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1205 1192 <span class="i">$Key</span> = <span class="q">"Package"</span><span class="sc">;</span> <span class="i">$Value</span> = <span class="i">PackageInfo::GetPackageName</span><span class="s">(</span><span class="s">)</span> . <span class="q">" "</span> . <span class="i">PackageInfo::GetVersionNumber</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1206 1193 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"# $Key = $Value\n"</span><span class="sc">;</span>
|
|
|
1207 1194
|
|
|
1208 1195 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1209 1196 <span class="i">$Key</span> = <span class="q">"Release Date"</span><span class="sc">;</span> <span class="i">$Value</span> = <span class="i">PackageInfo::GetReleaseDate</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1210 1197 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"# $Key = $Value\n"</span><span class="sc">;</span>
|
|
|
1211 1198
|
|
|
1212 1199 <span class="c"># Timestamp information...</span>
|
|
|
1213 1200 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1214 1201 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"#\n"</span><span class="sc">;</span>
|
|
|
1215 1202
|
|
|
1216 1203 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1217 1204 <span class="i">$Key</span> = <span class="q">"TimeStamp"</span><span class="sc">;</span> <span class="i">$Value</span> = <span class="i">TimeUtil::FPFileTimeStamp</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1218 1205 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"# $Key = $Value\n"</span><span class="sc">;</span>
|
|
|
1219 1206
|
|
|
1220 1207 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1221 1208 <span class="s">}</span>
|
|
|
1222 1209
|
|
|
1223 1210 <span class="c"># Write out required header data keys...</span>
|
|
|
1224 1211 <span class="c">#</span>
|
|
|
1225 <a name="_WriteRequiredHeaderDataKeys-"></a>1212 <span class="k">sub </span><span class="m">_WriteRequiredHeaderDataKeys</span> <span class="s">{</span>
|
|
|
1226 1213 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1227 1214 <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="cm">,</span> <span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1228 1215
|
|
|
1229 1216 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span>
|
|
|
1230 1217
|
|
|
1231 1218 <span class="i">$This</span><span class="i">->_GenerateWriteRequiredHeaderDataKeys</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1232 1219
|
|
|
1233 1220 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1234 1221 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"#\n"</span><span class="sc">;</span>
|
|
|
1235 1222
|
|
|
1236 1223 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="s">)</span> <span class="s">{</span>
|
|
|
1237 1224 <span class="i">$Value</span> = <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>}<span class="sc">;</span>
|
|
|
1238 1225
|
|
|
1239 1226 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1240 1227 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"# $Key = $Value\n"</span><span class="sc">;</span>
|
|
|
1241 1228
|
|
|
1242 1229 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^FingerprintsStringType$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1243 1230 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1244 1231 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"#\n"</span><span class="sc">;</span>
|
|
|
1245 1232 <span class="s">}</span>
|
|
|
1246 1233 <span class="s">}</span>
|
|
|
1247 1234
|
|
|
1248 1235 <span class="i">$This</span>->{<span class="w">LineNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
1249 1236 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"#\n"</span><span class="sc">;</span>
|
|
|
1250 1237
|
|
|
1251 1238 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1252 1239 <span class="s">}</span>
|
|
|
1253 1240
|
|
|
1254 <a name="_GenerateWriteRequiredHeaderDataKeys-"></a>1241 <span class="k">sub </span><span class="m">_GenerateWriteRequiredHeaderDataKeys</span> <span class="s">{</span>
|
|
|
1255 1242 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1256 1243
|
|
|
1257 1244 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} && <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>} =~ <span class="q">/^FingerprintsBitVector/i</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1258 1245 <span class="i">$This</span><span class="i">->_GenerateWriteRequiredHeaderDataKeysForBitVectorString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1259 1246 <span class="s">}</span>
|
|
|
1260 1247 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} && <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>} =~ <span class="q">/^FingerprintsVector/i</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1261 1248 <span class="i">$This</span><span class="i">->_GenerateWriteRequiredHeaderDataKeysForVectorString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1262 1249 <span class="s">}</span>
|
|
|
1263 1250 <span class="k">else</span> <span class="s">{</span>
|
|
|
1264 1251 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_GenerateWriteRequiredHeaderDataKeys: Required header data keys can't be generated: FingerprintsStringMode value, $This->{FingerprintsStringMode}, doesn't correspond to type of first FingerprintsString: $This->{FingerprintsString}..."</span><span class="sc">;</span>
|
|
|
1265 1252 <span class="s">}</span>
|
|
|
1266 1253
|
|
|
1267 1254 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1268 1255 <span class="s">}</span>
|
|
|
1269 1256
|
|
|
1270 1257 <span class="c"># Generate required data header keys and values for writing fingerprints bit vector string...</span>
|
|
|
1271 1258 <span class="c">#</span>
|
|
|
1272 <a name="_GenerateWriteRequiredHeaderDataKeysForBitVectorString-"></a>1259 <span class="k">sub </span><span class="m">_GenerateWriteRequiredHeaderDataKeysForBitVectorString</span> <span class="s">{</span>
|
|
|
1273 1260 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1274 1261 <span class="k">my</span><span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$Size</span><span class="cm">,</span> <span class="i">$BitStringFormat</span><span class="cm">,</span> <span class="i">$BitsOrder</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1275 1262
|
|
|
1276 1263 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1277 1264 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="cm">,</span> <span class="i">$This</span><span class="i">->_GetRequiredHeaderDataKeys</span><span class="s">(</span><span class="q">'FingerprintsBitVector'</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1278 1265
|
|
|
1279 1266 <span class="s">(</span><span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$Size</span><span class="cm">,</span> <span class="i">$BitStringFormat</span><span class="cm">,</span> <span class="i">$BitsOrder</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1280 1267
|
|
|
1281 1268 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1282 1269
|
|
|
1283 1270 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="s">)</span> <span class="s">{</span>
|
|
|
1284 1271 <span class="j">KEYTYPE:</span> <span class="s">{</span>
|
|
|
1285 1272 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^FingerprintsStringType$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1286 1273 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$VectorType</span><span class="sc">;</span>
|
|
|
1287 1274 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1288 1275 <span class="s">}</span>
|
|
|
1289 1276 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^Description$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1290 1277 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$Description</span><span class="sc">;</span>
|
|
|
1291 1278 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1292 1279 <span class="s">}</span>
|
|
|
1293 1280 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^Size$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1294 1281 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$Size</span><span class="sc">;</span>
|
|
|
1295 1282 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1296 1283 <span class="s">}</span>
|
|
|
1297 1284 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^BitStringFormat$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1298 1285 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$BitStringFormat</span><span class="sc">;</span>
|
|
|
1299 1286 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1300 1287 <span class="s">}</span>
|
|
|
1301 1288 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^BitsOrder$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1302 1289 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$BitsOrder</span><span class="sc">;</span>
|
|
|
1303 1290 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1304 1291 <span class="s">}</span>
|
|
|
1305 1292 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_GenerateWriteRequiredHeaderDataKeysForBitVectorString: Required header data key, $Key, value can't be generated: It's not a known key ..."</span><span class="sc">;</span>
|
|
|
1306 1293 <span class="s">}</span>
|
|
|
1307 1294 <span class="s">}</span>
|
|
|
1308 1295
|
|
|
1309 1296 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1310 1297 <span class="s">}</span>
|
|
|
1311 1298
|
|
|
1312 1299 <span class="c"># Generate required data header keys and values for writing fingerprints vector string...</span>
|
|
|
1313 1300 <span class="c">#</span>
|
|
|
1314 <a name="_GenerateWriteRequiredHeaderDataKeysForVectorString-"></a>1301 <span class="k">sub </span><span class="m">_GenerateWriteRequiredHeaderDataKeysForVectorString</span> <span class="s">{</span>
|
|
|
1315 1302 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1316 1303 <span class="k">my</span><span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$NumOfValues</span><span class="cm">,</span> <span class="i">$VectorValuesType</span><span class="cm">,</span> <span class="i">$VectorStringFormat</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1317 1304
|
|
|
1318 1305 <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1319 1306 <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="cm">,</span> <span class="i">$This</span><span class="i">->_GetRequiredHeaderDataKeys</span><span class="s">(</span><span class="q">'FingerprintsVector'</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1320 1307
|
|
|
1321 1308 <span class="s">(</span><span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$NumOfValues</span><span class="cm">,</span> <span class="i">$VectorValuesType</span><span class="cm">,</span> <span class="i">$VectorStringFormat</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1322 1309
|
|
|
1323 1310 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1324 1311
|
|
|
1325 1312 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeys</span>}}<span class="s">)</span> <span class="s">{</span>
|
|
|
1326 1313 <span class="j">KEYTYPE:</span> <span class="s">{</span>
|
|
|
1327 1314 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^FingerprintsStringType$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1328 1315 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$VectorType</span><span class="sc">;</span>
|
|
|
1329 1316 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1330 1317 <span class="s">}</span>
|
|
|
1331 1318 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^Description$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1332 1319 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$Description</span><span class="sc">;</span>
|
|
|
1333 1320 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1334 1321 <span class="s">}</span>
|
|
|
1335 1322 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^VectorValuesType$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1336 1323 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$VectorValuesType</span><span class="sc">;</span>
|
|
|
1337 1324 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1338 1325 <span class="s">}</span>
|
|
|
1339 1326 <span class="k">if</span> <span class="s">(</span><span class="i">$Key</span> =~ <span class="q">/^VectorStringFormat$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1340 1327 <span class="i">$This</span>->{<span class="w">RequiredHeaderDataKeysAndValues</span>}{<span class="i">$Key</span>} = <span class="i">$VectorStringFormat</span><span class="sc">;</span>
|
|
|
1341 1328 <span class="k">last</span> <span class="j">KEYTYPE</span><span class="sc">;</span>
|
|
|
1342 1329 <span class="s">}</span>
|
|
|
1343 1330 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_GenerateWriteRequiredHeaderDataKeysForVectorString: Required header data key, $Key, value can't be generated: It's not a known key ..."</span><span class="sc">;</span>
|
|
|
1344 1331 <span class="s">}</span>
|
|
|
1345 1332 <span class="s">}</span>
|
|
|
1346 1333
|
|
|
1347 1334 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1348 1335 <span class="s">}</span>
|
|
|
1349 1336
|
|
|
1350 1337
|
|
|
1351 1338 <span class="c"># Get ready for writing fingerprints FP file...</span>
|
|
|
1352 1339 <span class="c">#</span>
|
|
|
1353 <a name="_PrepareForWritingFingerprintsFPFileData-"></a>1340 <span class="k">sub </span><span class="m">_PrepareForWritingFingerprintsFPFileData</span> <span class="s">{</span>
|
|
|
1354 1341 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1355 1342 <span class="k">my</span><span class="s">(</span><span class="i">$FPFile</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$OutDelim</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1356 1343
|
|
|
1357 1344 <span class="i">$FPFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span>
|
|
|
1358 1345 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">Overwrite</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1359 1346 <span class="k">if</span> <span class="s">(</span><span class="k">-e</span> <span class="i">$FPFile</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1360 1347 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->_PrepareForWritingFingerprintsFPFileData: File, $FPFile, already exist. Use overwrite option..."</span><span class="sc">;</span>
|
|
|
1361 1348 <span class="s">}</span>
|
|
|
1362 1349 <span class="s">}</span>
|
|
|
1363 1350
|
|
|
1364 1351 <span class="c"># Setup FingerprintsStringMode status...</span>
|
|
|
1365 1352 <span class="c">#</span>
|
|
|
1366 1353 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1367 1354 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1368 1355 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
1369 1356
|
|
|
1370 1357 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1371 1358 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
1372 1359 <span class="s">}</span>
|
|
|
1373 1360 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1374 1361 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
1375 1362 <span class="s">}</span>
|
|
|
1376 1363
|
|
|
1377 1364 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} || <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1378 1365
|
|
|
1379 1366 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1380 1367 <span class="i">$This</span><span class="i">->_SetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1381 1368 <span class="i">$This</span><span class="i">->_SetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1382 1369 <span class="s">}</span>
|
|
|
1383 1370 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1384 1371 <span class="i">$This</span><span class="i">->_SetDefaultVectorStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1385 1372 <span class="s">}</span>
|
|
|
1386 1373
|
|
|
1387 1374 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1388 1375 <span class="s">}</span>
|
|
|
1389 1376
|
|
|
1390 1377 <span class="c"># Set default value for bit string format...</span>
|
|
|
1391 1378 <span class="c">#</span>
|
|
|
1392 <a name="_SetDefaultBitStringFormat-"></a>1379 <span class="k">sub </span><span class="m">_SetDefaultBitStringFormat</span> <span class="s">{</span>
|
|
|
1393 1380 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1394 1381
|
|
|
1395 1382 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1396 1383 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1397 1384 <span class="s">}</span>
|
|
|
1398 1385
|
|
|
1399 1386 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1400 1387 <span class="s">}</span>
|
|
|
1401 1388
|
|
|
1402 1389 <span class="c"># Set default value for bit string format...</span>
|
|
|
1403 1390 <span class="c">#</span>
|
|
|
1404 <a name="_SetDefaultBitsOrder-"></a>1391 <span class="k">sub </span><span class="m">_SetDefaultBitsOrder</span> <span class="s">{</span>
|
|
|
1405 1392 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1406 1393
|
|
|
1407 1394 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1408 1395 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1409 1396 <span class="s">}</span>
|
|
|
1410 1397
|
|
|
1411 1398 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1412 1399 <span class="s">}</span>
|
|
|
1413 1400
|
|
|
1414 1401 <span class="c"># Set default value for vector string format...</span>
|
|
|
1415 1402 <span class="c">#</span>
|
|
|
1416 <a name="_SetDefaultVectorStringFormat-"></a>1403 <span class="k">sub </span><span class="m">_SetDefaultVectorStringFormat</span> <span class="s">{</span>
|
|
|
1417 1404 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1418 1405
|
|
|
1419 1406 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} && <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1420 1407 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1421 1408 <span class="s">}</span>
|
|
|
1422 1409
|
|
|
1423 1410 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1424 1411 <span class="s">}</span>
|
|
|
1425 1412
|
|
|
1426 1413 <span class="c"># Generate fingerprints object using current fingerprints string...</span>
|
|
|
1427 1414 <span class="c">#</span>
|
|
|
1428 <a name="_GenerateFingerprintsObject-"></a>1415 <span class="k">sub </span><span class="m">_GenerateFingerprintsObject</span> <span class="s">{</span>
|
|
|
1429 1416 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1430 1417
|
|
|
1431 1418 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1432 1419
|
|
|
1433 1420 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1434 1421 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1435 1422 <span class="s">}</span>
|
|
|
1436 1423
|
|
|
1437 1424 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1438 1425 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsBitVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1439 1426 <span class="s">}</span>
|
|
|
1440 1427 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1441 1428 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1442 1429 <span class="s">}</span>
|
|
|
1443 1430 <span class="k">else</span> <span class="s">{</span>
|
|
|
1444 1431 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span>
|
|
|
1445 1432 <span class="s">}</span>
|
|
|
1446 1433
|
|
|
1447 1434 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1448 1435 <span class="s">}</span>
|
|
|
1449 1436
|
|
|
1450 1437 <span class="c"># Generate fingerprints string using current fingerprints object...</span>
|
|
|
1451 1438 <span class="c">#</span>
|
|
|
1452 <a name="_GenerateFingerprintsString-"></a>1439 <span class="k">sub </span><span class="m">_GenerateFingerprintsString</span> <span class="s">{</span>
|
|
|
1453 1440 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1454 1441
|
|
|
1455 1442 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
1456 1443
|
|
|
1457 1444 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1458 1445 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1459 1446 <span class="s">}</span>
|
|
|
1460 1447
|
|
|
1461 1448 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1462 1449 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1463 1450 <span class="s">}</span>
|
|
|
1464 1451 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1465 1452 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1466 1453 <span class="s">}</span>
|
|
|
1467 1454
|
|
|
1468 1455 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1469 1456 <span class="s">}</span>
|
|
|
1470 1457
|
|
|
1471 1458 <span class="c"># Generate fingerprints string using partial fingerprints string and header keys data...</span>
|
|
|
1472 1459 <span class="c">#</span>
|
|
|
1473 1460 <span class="c"># Notes:</span>
|
|
|
1474 1461 <span class="c"># o FP file fingerprints data line only contain partial fingerprints data which</span>
|
|
|
1475 1462 <span class="c"># can't be used directly to create fingerprints bit-vector or vector objects</span>
|
|
|
1476 1463 <span class="c"># using functions available in FingerprintsStringUtil.pm module</span>
|
|
|
1477 1464 <span class="c">#</span>
|
|
|
1478 <a name="_GenerateFingerprintsStringFromPartialFingerprintsString-"></a>1465 <span class="k">sub </span><span class="m">_GenerateFingerprintsStringFromPartialFingerprintsString</span> <span class="s">{</span>
|
|
|
1479 1466 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1480 1467 <span class="k">my</span><span class="s">(</span><span class="i">$FPStringDelim</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1481 1468
|
|
|
1482 1469 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
1483 1470
|
|
|
1484 1471 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1485 1472 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1486 1473 <span class="s">}</span>
|
|
|
1487 1474
|
|
|
1488 1475 <span class="i">$FPStringDelim</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingeprintsStringDelimiter</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1489 1476
|
|
|
1490 1477 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1491 1478 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringPrefix</span>} . <span class="i">$FPStringDelim</span> . <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>}<span class="sc">;</span>
|
|
|
1492 1479 <span class="s">}</span>
|
|
|
1493 1480 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1494 1481 <span class="k">my</span><span class="s">(</span><span class="i">$NumOfValues</span><span class="cm">,</span> <span class="i">$VectorStringData</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1495 1482
|
|
|
1496 1483 <span class="s">(</span><span class="i">$NumOfValues</span><span class="cm">,</span> <span class="i">$VectorStringData</span><span class="s">)</span> = <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} =~ <span class="q">/^(.*?)$FPStringDelim(.*?)$/</span><span class="sc">;</span>
|
|
|
1497 1484 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">defined</span><span class="s">(</span><span class="i">$NumOfValues</span><span class="s">)</span> && <span class="k">defined</span><span class="s">(</span><span class="i">$VectorStringData</span><span class="s">)</span> && <span class="i">$VectorStringData</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1498 1485 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1499 1486 <span class="s">}</span>
|
|
|
1500 1487
|
|
|
1501 1488 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringPrefix1</span>} . <span class="i">$FPStringDelim</span> . <span class="i">$NumOfValues</span> . <span class="i">$FPStringDelim</span> . <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringPrefix2</span>} . <span class="i">$FPStringDelim</span> . <span class="i">$VectorStringData</span><span class="sc">;</span>
|
|
|
1502 1489 <span class="s">}</span>
|
|
|
1503 1490
|
|
|
1504 1491 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1505 1492 <span class="s">}</span>
|
|
|
1506 1493
|
|
|
1507 1494 <span class="c"># Generate partial fingerprints string using fingerprints string and header keys data...</span>
|
|
|
1508 1495 <span class="c">#</span>
|
|
|
1509 1496 <span class="c"># Notes:</span>
|
|
|
1510 1497 <span class="c"># o FP file fingerprints data line only contain partial fingerprints data which</span>
|
|
|
1511 1498 <span class="c"># can't be used directly to create fingerprints bit-vector or vector objects</span>
|
|
|
1512 1499 <span class="c"># using functions available in FingerprintsStringUtil.pm module</span>
|
|
|
1513 1500 <span class="c">#</span>
|
|
|
1514 <a name="_GeneratePartialFingerprintsStringFromFingerprintsString-"></a>1501 <span class="k">sub </span><span class="m">_GeneratePartialFingerprintsStringFromFingerprintsString</span> <span class="s">{</span>
|
|
|
1515 1502 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1516 1503
|
|
|
1517 1504 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
1518 1505
|
|
|
1519 1506 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1520 1507 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1521 1508 <span class="s">}</span>
|
|
|
1522 1509
|
|
|
1523 1510 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1524 1511 <span class="k">my</span><span class="s">(</span><span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$Size</span><span class="cm">,</span> <span class="i">$BitStringFormat</span><span class="cm">,</span> <span class="i">$BitsOrder</span><span class="cm">,</span> <span class="i">$BitVectorString</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1525 1512
|
|
|
1526 1513 <span class="s">(</span><span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$Size</span><span class="cm">,</span> <span class="i">$BitStringFormat</span><span class="cm">,</span> <span class="i">$BitsOrder</span><span class="cm">,</span> <span class="i">$BitVectorString</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1527 1514 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="i">$BitVectorString</span><span class="sc">;</span>
|
|
|
1528 1515 <span class="s">}</span>
|
|
|
1529 1516 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1530 1517 <span class="k">my</span><span class="s">(</span><span class="i">$FPStringDelim</span><span class="cm">,</span> <span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$NumOfValues</span><span class="cm">,</span> <span class="i">$VectorValuesType</span><span class="cm">,</span> <span class="i">$VectorStringFormat</span><span class="cm">,</span> <span class="i">$VectorString1</span><span class="cm">,</span> <span class="i">$VectorString2</span><span class="cm">,</span> <span class="i">$VectorString</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1531 1518
|
|
|
1532 1519 <span class="i">$FPStringDelim</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingeprintsStringDelimiter</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1533 1520
|
|
|
1534 1521 <span class="s">(</span><span class="i">$VectorType</span><span class="cm">,</span> <span class="i">$Description</span><span class="cm">,</span> <span class="i">$NumOfValues</span><span class="cm">,</span> <span class="i">$VectorValuesType</span><span class="cm">,</span> <span class="i">$VectorStringFormat</span><span class="cm">,</span> <span class="i">$VectorString1</span><span class="cm">,</span> <span class="i">$VectorString2</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1535 1522 <span class="i">$VectorString</span> = <span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$VectorString2</span><span class="s">)</span> ? <span class="i">$VectorString1</span> <span class="co">:</span> <span class="q">"${VectorString1}${FPStringDelim}${VectorString2}"</span><span class="sc">;</span>
|
|
|
1536 1523
|
|
|
1537 1524 <span class="i">$This</span>->{<span class="w">PartialFingerprintsString</span>} = <span class="i">$NumOfValues</span> . <span class="i">$FPStringDelim</span> . <span class="i">$VectorString</span><span class="sc">;</span>
|
|
|
1538 1525 <span class="s">}</span>
|
|
|
1539 1526
|
|
|
1540 1527 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1541 1528 <span class="s">}</span>
|
|
|
1542 1529
|
|
|
1543 1530 <span class="c"># Is it a fingerprints file?</span>
|
|
|
1544 <a name="IsFingerprintsFPFile-"></a>1531 <span class="k">sub </span><span class="m">IsFingerprintsFPFile ($;$)</span> <span class="s">{</span>
|
|
|
1545 1532 <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1546 1533 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$Status</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1547 1534
|
|
|
1548 1535 <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> && <span class="s">(</span><span class="i">_IsFingerprintsFPFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1549 1536 <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1550 1537 <span class="s">}</span>
|
|
|
1551 1538 <span class="k">else</span> <span class="s">{</span>
|
|
|
1552 1539 <span class="i">$FileName</span> = <span class="i">$FirstParameter</span><span class="sc">;</span>
|
|
|
1553 1540 <span class="s">}</span>
|
|
|
1554 1541
|
|
|
1555 1542 <span class="c"># Check file extension...</span>
|
|
|
1556 1543 <span class="i">$Status</span> = <span class="i">FileUtil::CheckFileType</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="q">"fpf fp"</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1557 1544
|
|
|
1558 1545 <span class="k">return</span> <span class="i">$Status</span><span class="sc">;</span>
|
|
|
1559 1546 <span class="s">}</span>
|
|
|
1560 1547
|
|
|
1561 1548 <span class="c"># Is it a FingerprintsFPFileIO object?</span>
|
|
|
1562 <a name="_IsFingerprintsFPFileIO-"></a>1549 <span class="k">sub </span><span class="m">_IsFingerprintsFPFileIO</span> <span class="s">{</span>
|
|
|
1563 1550 <span class="k">my</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1564 1551
|
|
|
1565 1552 <span class="k">return</span> <span class="s">(</span><span class="i">Scalar::Util::blessed</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> && <span class="i">$Object</span><span class="i">->isa</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1566 1553 <span class="s">}</span>
|
|
|
1567 1554
|
|
|
1568 <a name="EOF-"></a></pre>
|
|
|
1569 <p> </p>
|
|
|
1570 <br />
|
|
|
1571 <center>
|
|
|
1572 <img src="../../../images/h2o2.png">
|
|
|
1573 </center>
|
|
|
1574 </body>
|
|
|
1575 </html>
|
