| 0 | 1 <html> | 
|  | 2 <head> | 
|  | 3 <title>MayaChemTools:Code:MolecularDescriptors::MolecularDescriptors.pm</title> | 
|  | 4 <meta http-equiv="content-type" content="text/html;charset=utf-8"> | 
|  | 5 <link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css"> | 
|  | 6 </head> | 
|  | 7 <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> | 
|  | 8 <br/> | 
|  | 9 <center> | 
|  | 10 <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> | 
|  | 11 </center> | 
|  | 12 <br/> | 
|  | 13 <pre> | 
|  | 14 <a name="package-MolecularDescriptors::MolecularDescriptors-"></a>   1 <span class="k">package </span><span class="i">MolecularDescriptors::MolecularDescriptors</span><span class="sc">;</span> | 
|  | 15    2 <span class="c">#</span> | 
|  | 16    3 <span class="c"># $RCSfile: MolecularDescriptors.pm,v $</span> | 
|  | 17    4 <span class="c"># $Date: 2015/02/28 20:49:20 $</span> | 
|  | 18    5 <span class="c"># $Revision: 1.14 $</span> | 
|  | 19    6 <span class="c">#</span> | 
|  | 20    7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span> | 
|  | 21    8 <span class="c">#</span> | 
|  | 22    9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span> | 
|  | 23   10 <span class="c">#</span> | 
|  | 24   11 <span class="c"># This file is part of MayaChemTools.</span> | 
|  | 25   12 <span class="c">#</span> | 
|  | 26   13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span> | 
|  | 27   14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span> | 
|  | 28   15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span> | 
|  | 29   16 <span class="c"># later version.</span> | 
|  | 30   17 <span class="c">#</span> | 
|  | 31   18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span> | 
|  | 32   19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span> | 
|  | 33   20 <span class="c"># for a particular purpose.  See the GNU Lesser General Public License for more</span> | 
|  | 34   21 <span class="c"># details.</span> | 
|  | 35   22 <span class="c">#</span> | 
|  | 36   23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span> | 
|  | 37   24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span> | 
|  | 38   25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span> | 
|  | 39   26 <span class="c"># Boston, MA, 02111-1307, USA.</span> | 
|  | 40   27 <span class="c">#</span> | 
|  | 41   28 | 
|  | 42   29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span> | 
|  | 43   30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span> | 
|  | 44   31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span> | 
|  | 45   32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 46   33 <span class="k">use</span> <span class="w">ObjectProperty</span><span class="sc">;</span> | 
|  | 47   34 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 48   35 | 
|  | 49   36 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span> | 
|  | 50   37 | 
|  | 51   38 <span class="i">@ISA</span> = <span class="q">qw(ObjectProperty Exporter)</span><span class="sc">;</span> | 
|  | 52   39 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span> | 
|  | 53   40 <span class="i">@EXPORT_OK</span> = <span class="q">qw()</span><span class="sc">;</span> | 
|  | 54   41 | 
|  | 55   42 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span>  <span class="cm">=></span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span> | 
|  | 56   43 | 
|  | 57   44 <span class="c"># Setup class variables...</span> | 
|  | 58   45 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span> | 
|  | 59   46 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 60   47 | 
|  | 61   48 <span class="c"># Class constructor...</span> | 
|  | 62 <a name="new-"></a>  49 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span> | 
|  | 63   50   <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 64   51 | 
|  | 65   52   <span class="c"># Initialize object...</span> | 
|  | 66   53   <span class="k">my</span> <span class="i">$This</span> = <span class="s">{</span><span class="s">}</span><span class="sc">;</span> | 
|  | 67   54   <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span> | 
|  | 68   55   <span class="i">$This</span><span class="i">->_InitializeMolecularDescriptors</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 69   56 | 
|  | 70   57   <span class="i">$This</span><span class="i">->_InitializeMolecularDescriptorsProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> | 
|  | 71   58 | 
|  | 72   59   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 73   60 <span class="s">}</span> | 
|  | 74   61 | 
|  | 75   62 <span class="c"># Initialize object data...</span> | 
|  | 76   63 <span class="c">#</span> | 
|  | 77 <a name="_InitializeMolecularDescriptors-"></a>  64 <span class="k">sub </span><span class="m">_InitializeMolecularDescriptors</span> <span class="s">{</span> | 
|  | 78   65   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 79   66 | 
|  | 80   67   <span class="c"># Molecule object...</span> | 
|  | 81   68   <span class="i">$This</span>->{<span class="w">Molecule</span>} = <span class="q">''</span><span class="sc">;</span> | 
|  | 82   69 | 
|  | 83   70   <span class="c"># Type of molecular descriptors...</span> | 
|  | 84   71   <span class="i">$This</span>->{<span class="w">Type</span>} = <span class="q">''</span><span class="sc">;</span> | 
|  | 85   72 | 
|  | 86   73   <span class="c"># Names and calculated value of molecular descriptors...</span> | 
|  | 87   74   <span class="c">#</span> | 
|  | 88   75   <span class="c"># The specific descriptor class, derived from this base class, populate descriptor names and values</span> | 
|  | 89   76   <span class="c"># arrays...</span> | 
|  | 90   77   <span class="c">#</span> | 
|  | 91   78   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 92   79   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 93   80 | 
|  | 94   81   <span class="c"># Marks successful generation of descriptors...</span> | 
|  | 95   82   <span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>} = <span class="n">0</span><span class="sc">;</span> | 
|  | 96   83 | 
|  | 97   84 <span class="s">}</span> | 
|  | 98   85 | 
|  | 99   86 <span class="c"># Initialize class ...</span> | 
|  | 100 <a name="_InitializeClass-"></a>  87 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span> | 
|  | 101   88   <span class="c">#Class name...</span> | 
|  | 102   89   <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span> | 
|  | 103   90 <span class="s">}</span> | 
|  | 104   91 | 
|  | 105   92 | 
|  | 106   93 <span class="c"># Initialize object properties....</span> | 
|  | 107 <a name="_InitializeMolecularDescriptorsProperties-"></a>  94 <span class="k">sub </span><span class="m">_InitializeMolecularDescriptorsProperties</span> <span class="s">{</span> | 
|  | 108   95   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 109   96 | 
|  | 110   97   <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span> | 
|  | 111   98   <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span>  <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span> | 
|  | 112   99     <span class="i">$MethodName</span> = <span class="q">"Set${Name}"</span><span class="sc">;</span> | 
|  | 113  100     <span class="i">$This</span><span class="i">->$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span> | 
|  | 114  101   <span class="s">}</span> | 
|  | 115  102 | 
|  | 116  103   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 117  104 <span class="s">}</span> | 
|  | 118  105 | 
|  | 119  106 <span class="c"># Initialize descriptor names and values...</span> | 
|  | 120  107 <span class="c">#</span> | 
|  | 121 <a name="_InitializeDescriptorNamesAndValues-"></a> 108 <span class="k">sub </span><span class="m">_InitializeDescriptorNamesAndValues</span> <span class="s">{</span> | 
|  | 122  109   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Names</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 123  110 | 
|  | 124  111   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} = <span class="i">@Names</span><span class="sc">;</span> | 
|  | 125  112 | 
|  | 126  113   <span class="i">$This</span><span class="i">->_InitializeDescriptorValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 127  114 | 
|  | 128  115   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 129  116 <span class="s">}</span> | 
|  | 130  117 | 
|  | 131  118 <span class="c"># Initialize descriptor values...</span> | 
|  | 132  119 <span class="c">#</span> | 
|  | 133 <a name="_InitializeDescriptorValues-"></a> 120 <span class="k">sub </span><span class="m">_InitializeDescriptorValues</span> <span class="s">{</span> | 
|  | 134  121   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 135  122 | 
|  | 136  123   <span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>} = <span class="n">0</span><span class="sc">;</span> | 
|  | 137  124 | 
|  | 138  125   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 139  126 | 
|  | 140  127   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 141  128 <span class="s">}</span> | 
|  | 142  129 | 
|  | 143  130 <span class="c"># Set molecule object...</span> | 
|  | 144  131 <span class="c">#</span> | 
|  | 145 <a name="SetMolecule-"></a> 132 <span class="k">sub </span><span class="m">SetMolecule</span> <span class="s">{</span> | 
|  | 146  133   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Molecule</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 147  134 | 
|  | 148  135   <span class="i">$This</span>->{<span class="w">Molecule</span>} = <span class="i">$Molecule</span><span class="sc">;</span> | 
|  | 149  136 | 
|  | 150  137   <span class="c"># Weaken the reference to disable increment of reference count...</span> | 
|  | 151  138   <span class="i">Scalar::Util::weaken</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">Molecule</span>}<span class="s">)</span><span class="sc">;</span> | 
|  | 152  139 | 
|  | 153  140   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 154  141 <span class="s">}</span> | 
|  | 155  142 | 
|  | 156  143 <span class="c"># Set type and make sure it's not already set...</span> | 
|  | 157  144 <span class="c">#</span> | 
|  | 158 <a name="SetType-"></a> 145 <span class="k">sub </span><span class="m">SetType</span> <span class="s">{</span> | 
|  | 159  146   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Type</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 160  147 | 
|  | 161  148   <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">Type</span>}<span class="s">)</span> <span class="s">{</span> | 
|  | 162  149     <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetType: Can't change MolecularDescriptors type:  It's already set..."</span><span class="sc">;</span> | 
|  | 163  150   <span class="s">}</span> | 
|  | 164  151   <span class="i">$This</span>->{<span class="w">Type</span>} = <span class="i">$Type</span><span class="sc">;</span> | 
|  | 165  152 | 
|  | 166  153   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 167  154 <span class="s">}</span> | 
|  | 168  155 | 
|  | 169  156 <span class="c"># Get molecular descriptor names as an array...</span> | 
|  | 170  157 <span class="c">#</span> | 
|  | 171 <a name="GetDescriptorNames-"></a> 158 <span class="k">sub </span><span class="m">GetDescriptorNames</span> <span class="s">{</span> | 
|  | 172  159   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 173  160 | 
|  | 174  161   <span class="k">return</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="sc">;</span> | 
|  | 175  162 <span class="s">}</span> | 
|  | 176  163 | 
|  | 177  164 <span class="c"># Set descriptor names...</span> | 
|  | 178  165 <span class="c">#</span> | 
|  | 179 <a name="SetDescriptorNames-"></a> 166 <span class="k">sub </span><span class="m">SetDescriptorNames</span> <span class="s">{</span> | 
|  | 180  167   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Names</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 181  168 | 
|  | 182  169   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} = <span class="i">@Names</span><span class="sc">;</span> | 
|  | 183  170 | 
|  | 184  171   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 185  172 <span class="s">}</span> | 
|  | 186  173 | 
|  | 187  174 <span class="c"># Add descriptor names...</span> | 
|  | 188  175 <span class="c">#</span> | 
|  | 189 <a name="AddDescriptorNames-"></a> 176 <span class="k">sub </span><span class="m">AddDescriptorNames</span> <span class="s">{</span> | 
|  | 190  177   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Names</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 191  178 | 
|  | 192  179   <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="cm">,</span> <span class="i">@Names</span><span class="sc">;</span> | 
|  | 193  180 | 
|  | 194  181   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 195  182 <span class="s">}</span> | 
|  | 196  183 | 
|  | 197  184 <span class="c"># Set descriptor values...</span> | 
|  | 198  185 <span class="c">#</span> | 
|  | 199 <a name="SetDescriptorValues-"></a> 186 <span class="k">sub </span><span class="m">SetDescriptorValues</span> <span class="s">{</span> | 
|  | 200  187   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 201  188 | 
|  | 202  189   <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} = <span class="i">@Values</span><span class="sc">;</span> | 
|  | 203  190 | 
|  | 204  191   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 205  192 <span class="s">}</span> | 
|  | 206  193 | 
|  | 207  194 <span class="c"># Add descriptor values...</span> | 
|  | 208  195 <span class="c">#</span> | 
|  | 209 <a name="AddDescriptorValues-"></a> 196 <span class="k">sub </span><span class="m">AddDescriptorValues</span> <span class="s">{</span> | 
|  | 210  197   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">@Values</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 211  198 | 
|  | 212  199   <span class="k">push</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}}<span class="cm">,</span> <span class="i">@Values</span><span class="sc">;</span> | 
|  | 213  200 | 
|  | 214  201   <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span> | 
|  | 215  202 <span class="s">}</span> | 
|  | 216  203 | 
|  | 217  204 <span class="c"># Is descriptors generation successful?</span> | 
|  | 218  205 <span class="c">#</span> | 
|  | 219  206 <span class="c"># Notes:</span> | 
|  | 220  207 <span class="c">#   . The specific molecular descriptor class generation class sets the value of</span> | 
|  | 221  208 <span class="c">#     DescriptorsCalculated  to 1 after the successful generation of descriptors;</span> | 
|  | 222  209 <span class="c">#     otherwise, it's set to 0.</span> | 
|  | 223  210 <span class="c">#</span> | 
|  | 224 <a name="IsDescriptorsGenerationSuccessful-"></a> 211 <span class="k">sub </span><span class="m">IsDescriptorsGenerationSuccessful</span> <span class="s">{</span> | 
|  | 225  212   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 226  213 | 
|  | 227  214   <span class="k">return</span> <span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> | 
|  | 228  215 <span class="s">}</span> | 
|  | 229  216 | 
|  | 230  217 <span class="c"># Get all descriptor values as an array...</span> | 
|  | 231  218 <span class="c">#</span> | 
|  | 232 <a name="GetDescriptorValues-"></a> 219 <span class="k">sub </span><span class="m">GetDescriptorValues</span> <span class="s">{</span> | 
|  | 233  220   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 234  221 | 
|  | 235  222   <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DescriptorsGenerated</span>}<span class="s">)</span> <span class="s">{</span> | 
|  | 236  223     <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}} <span class="co">:</span> <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorValues</span>}}<span class="sc">;</span> | 
|  | 237  224   <span class="s">}</span> | 
|  | 238  225   <span class="k">else</span> <span class="s">{</span> | 
|  | 239  226     <span class="k">my</span><span class="s">(</span><span class="i">@DescriptorValues</span><span class="s">)</span><span class="sc">;</span> | 
|  | 240  227 | 
|  | 241  228     <span class="i">@DescriptorValues</span> = <span class="s">(</span><span class="q">'None'</span><span class="s">)</span> x <span class="k">scalar</span> <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="sc">;</span> | 
|  | 242  229 | 
|  | 243  230     <span class="k">return</span> <span class="k">wantarray</span> ? <span class="i">@DescriptorValues</span> <span class="co">:</span> <span class="k">scalar</span> <span class="i">@DescriptorValues</span><span class="sc">;</span> | 
|  | 244  231   <span class="s">}</span> | 
|  | 245  232 <span class="s">}</span> | 
|  | 246  233 | 
|  | 247  234 <span class="c"># Get descriptor value for a specified descriptor name...</span> | 
|  | 248  235 <span class="c">#</span> | 
|  | 249 <a name="GetDescriptorValueByName-"></a> 236 <span class="k">sub </span><span class="m">GetDescriptorValueByName</span> <span class="s">{</span> | 
|  | 250  237   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Name</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 251  238   <span class="k">my</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> | 
|  | 252  239 | 
|  | 253  240   <span class="i">%NamesAndValues</span> = <span class="i">$This</span><span class="i">->GetDescriptorNamesAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 254  241 | 
|  | 255  242   <span class="k">return</span> <span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="i">$Name</span>} ? <span class="i">$NamesAndValues</span>{<span class="i">$Name</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span> | 
|  | 256  243 | 
|  | 257  244 <span class="s">}</span> | 
|  | 258  245 | 
|  | 259  246 <span class="c"># Get calculated molecular descriptor names sand values as a to a hash with names</span> | 
|  | 260  247 <span class="c"># and values as key/value pairs...</span> | 
|  | 261  248 <span class="c">#</span> | 
|  | 262 <a name="GetDescriptorNamesAndValues-"></a> 249 <span class="k">sub </span><span class="m">GetDescriptorNamesAndValues</span> <span class="s">{</span> | 
|  | 263  250   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 264  251   <span class="k">my</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> | 
|  | 265  252 | 
|  | 266  253   <span class="i">%NamesAndValues</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 267  254   <span class="i">@NamesAndValues</span>{ <span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}} } = <span class="i">$This</span><span class="i">->GetDescriptorValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 268  255 | 
|  | 269  256   <span class="k">return</span> <span class="i">%NamesAndValues</span><span class="sc">;</span> | 
|  | 270  257 <span class="s">}</span> | 
|  | 271  258 | 
|  | 272  259 <span class="c"># Return a string containing descriptor names and values...</span> | 
|  | 273  260 <span class="c">#</span> | 
|  | 274 <a name="_StringifyDescriptorNamesAndValues-"></a> 261 <span class="k">sub </span><span class="m">_StringifyDescriptorNamesAndValues</span> <span class="s">{</span> | 
|  | 275  262   <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> | 
|  | 276  263   <span class="k">my</span><span class="s">(</span><span class="i">$NamesAndValuesString</span><span class="cm">,</span> <span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">@NamesAndValuesInfo</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span> | 
|  | 277  264 | 
|  | 278  265   <span class="i">@NamesAndValuesInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 279  266   <span class="i">%NamesAndValues</span> = <span class="i">$This</span><span class="i">->GetDescriptorNamesAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> | 
|  | 280  267 | 
|  | 281  268   <span class="k">for</span> <span class="i">$Name</span> <span class="s">(</span><span class="i">@</span>{<span class="i">$This</span>->{<span class="w">DescriptorNames</span>}}<span class="s">)</span> <span class="s">{</span> | 
|  | 282  269     <span class="i">$Value</span> = <span class="i">$NamesAndValues</span>{<span class="i">$Name</span>}<span class="sc">;</span> | 
|  | 283  270     <span class="i">$Value</span> = <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span> || <span class="i">$Value</span> =~ <span class="q">/^None$/i</span><span class="s">)</span> ? <span class="q">'None'</span> <span class="co">:</span> <span class="i">$Value</span><span class="sc">;</span> | 
|  | 284  271     <span class="k">push</span> <span class="i">@NamesAndValuesInfo</span><span class="cm">,</span> <span class="q">"$Name - $Value"</span><span class="sc">;</span> | 
|  | 285  272   <span class="s">}</span> | 
|  | 286  273   <span class="k">if</span> <span class="s">(</span><span class="i">@NamesAndValuesInfo</span><span class="s">)</span> <span class="s">{</span> | 
|  | 287  274     <span class="i">$NamesAndValuesString</span> = <span class="q">"Names - Values: <"</span> . <span class="i">TextUtil::JoinWords</span><span class="s">(</span>\<span class="i">@NamesAndValuesInfo</span><span class="cm">,</span> <span class="q">", "</span><span class="cm">,</span> <span class="n">0</span><span class="s">)</span> . <span class="q">">"</span><span class="sc">;</span> | 
|  | 288  275   <span class="s">}</span> | 
|  | 289  276   <span class="k">else</span> <span class="s">{</span> | 
|  | 290  277     <span class="i">$NamesAndValuesString</span> = <span class="q">"Names - Values: < None>"</span><span class="sc">;</span> | 
|  | 291  278   <span class="s">}</span> | 
|  | 292  279   <span class="k">return</span> <span class="i">$NamesAndValuesString</span><span class="sc">;</span> | 
|  | 293  280 <span class="s">}</span> | 
|  | 294  281 | 
|  | 295 <a name="EOF-"></a></pre> | 
|  | 296 <p> </p> | 
|  | 297 <br /> | 
|  | 298 <center> | 
|  | 299 <img src="../../../images/h2o2.png"> | 
|  | 300 </center> | 
|  | 301 </body> | 
|  | 302 </html> |