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14 <a name="package-FileIO::FingerprintsSDFileIO-"></a> 1 <span class="k">package </span><span class="i">FileIO::FingerprintsSDFileIO</span><span class="sc">;</span>
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15 2 <span class="c">#</span>
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16 3 <span class="c"># $RCSfile: FingerprintsSDFileIO.pm,v $</span>
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17 4 <span class="c"># $Date: 2015/02/28 20:48:43 $</span>
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18 5 <span class="c"># $Revision: 1.18 $</span>
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19 6 <span class="c">#</span>
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20 7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span>
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21 8 <span class="c">#</span>
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22 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span>
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23 10 <span class="c">#</span>
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24 11 <span class="c"># This file is part of MayaChemTools.</span>
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25 12 <span class="c">#</span>
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26 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span>
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27 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span>
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28 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span>
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29 16 <span class="c"># later version.</span>
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30 17 <span class="c">#</span>
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31 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span>
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32 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span>
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33 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span>
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34 21 <span class="c"># details.</span>
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35 22 <span class="c">#</span>
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36 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span>
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37 24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span>
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38 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span>
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39 26 <span class="c"># Boston, MA, 02111-1307, USA.</span>
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40 27 <span class="c">#</span>
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41 28
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42 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span>
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43 30 <span class="k">use</span> <span class="w">Carp</span><span class="sc">;</span>
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44 31 <span class="k">use</span> <span class="w">Exporter</span><span class="sc">;</span>
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45 32 <span class="k">use</span> <span class="w">Scalar::Util</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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46 33 <span class="k">use</span> <span class="w">TextUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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47 34 <span class="k">use</span> <span class="w">FileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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48 35 <span class="k">use</span> <span class="w">SDFileUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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49 36 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsStringUtil</span> <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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50 37 <span class="k">use</span> <span class="w">FileIO::FileIO</span><span class="sc">;</span>
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51 38
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52 39 <span class="k">use</span> <span class="w">vars</span> <span class="q">qw(@ISA @EXPORT @EXPORT_OK %EXPORT_TAGS)</span><span class="sc">;</span>
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53 40
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54 41 <span class="i">@ISA</span> = <span class="q">qw(FileIO::FileIO Exporter)</span><span class="sc">;</span>
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55 42 <span class="i">@EXPORT</span> = <span class="q">qw()</span><span class="sc">;</span>
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56 43 <span class="i">@EXPORT_OK</span> = <span class="q">qw(IsFingerprintsSDFile)</span><span class="sc">;</span>
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57 44
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58 45 <span class="i">%EXPORT_TAGS</span> = <span class="s">(</span><span class="w">all</span> <span class="cm">=></span> <span class="s">[</span><span class="i">@EXPORT</span><span class="cm">,</span> <span class="i">@EXPORT_OK</span><span class="s">]</span><span class="s">)</span><span class="sc">;</span>
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59 46
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60 47 <span class="c"># Setup class variables...</span>
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61 48 <span class="k">my</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="sc">;</span>
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62 49 <span class="i">_InitializeClass</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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63 50
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64 51 <span class="c"># Class constructor...</span>
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65 <a name="new-"></a> 52 <span class="k">sub </span><span class="m">new</span> <span class="s">{</span>
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66 53 <span class="k">my</span><span class="s">(</span><span class="i">$Class</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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67 54
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68 55 <span class="c"># Initialize object...</span>
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69 56 <span class="k">my</span> <span class="i">$This</span> = <span class="i">$Class</span><span class="i">->SUPER::new</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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70 57 <span class="k">bless</span> <span class="i">$This</span><span class="cm">,</span> <span class="k">ref</span><span class="s">(</span><span class="i">$Class</span><span class="s">)</span> || <span class="i">$Class</span><span class="sc">;</span>
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71 58 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIO</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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72 59
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73 60 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
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74 61
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75 62 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
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76 63 <span class="s">}</span>
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77 64
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78 65 <span class="c"># Initialize object data...</span>
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79 66 <span class="c">#</span>
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80 <a name="_InitializeFingerprintsSDFileIO-"></a> 67 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIO</span> <span class="s">{</span>
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81 68 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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82 69
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83 70 <span class="c"># Fingerprints string data format during read/write...</span>
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84 71 <span class="c">#</span>
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85 72 <span class="c"># For file read:</span>
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86 73 <span class="c">#</span>
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87 74 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span>
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88 75 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span>
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89 76 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span>
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90 77 <span class="c">#</span>
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91 78 <span class="c"># Default value: AutoDetect</span>
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92 79 <span class="c">#</span>
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93 80 <span class="c"># For file write:</span>
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94 81 <span class="c">#</span>
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95 82 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span>
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96 83 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span>
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97 84 <span class="c">#</span>
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98 85 <span class="c"># Default value: undef</span>
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99 86 <span class="c">#</span>
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100 87 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="k">undef</span><span class="sc">;</span>
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101 88
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102 89 <span class="c"># For file read:</span>
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103 90 <span class="c">#</span>
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104 91 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span>
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105 92 <span class="c">#</span>
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106 93 <span class="c"># For file write:</span>
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107 94 <span class="c">#</span>
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108 95 <span class="c"># o Fingerprints bit-vector and vector object for current fingerprints string</span>
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109 96 <span class="c"># o Any supported fingerprints object: PathLengthFingerprints, ExtendedConnectivity, and so on.</span>
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110 97 <span class="c">#</span>
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111 98 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
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112 99
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113 100 <span class="c"># Fingerprints SD file data field label during read/write</span>
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114 101 <span class="c">#</span>
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115 102 <span class="c"># For file read:</span>
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116 103 <span class="c">#</span>
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117 104 <span class="c"># Value of AutoDetect implies use first data field containing the word Fingerprints in its</span>
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118 105 <span class="c"># data field label to retrieve fingerprints string data. Othwewise, a valid data field name</span>
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119 106 <span class="c"># must be specified.</span>
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120 107 <span class="c">#</span>
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121 108 <span class="c"># For file write:</span>
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122 109 <span class="c">#</span>
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123 110 <span class="c"># Data field label to use for writing fingerprints string. Default: Fingerprints</span>
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124 111 <span class="c">#</span>
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125 112 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="k">undef</span><span class="sc">;</span>
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126 113
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127 114 <span class="c"># Fingepritns string for current line during read/write...</span>
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128 115 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
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129 116
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130 117 <span class="c"># First compound data string read/write...</span>
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131 118 <span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>} = <span class="n">1</span><span class="sc">;</span>
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132 119
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133 120 <span class="c"># Current fingerprints string data compound number during read/write...</span>
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134 121 <span class="i">$This</span>->{<span class="w">CompoundNum</span>} = <span class="n">0</span><span class="sc">;</span>
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135 122
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136 123 <span class="c"># Compound data string during read/write...</span>
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137 124 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="k">undef</span><span class="sc">;</span>
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138 125
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139 126 <span class="c"># Initialize parameters for read...</span>
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140 127 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIORead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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141 128
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142 129 <span class="c"># Initialize parameters for write...</span>
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143 130 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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144 131
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145 132 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
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146 133 <span class="s">}</span>
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147 134
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148 135 <span class="c"># Initialize class ...</span>
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149 <a name="_InitializeClass-"></a> 136 <span class="k">sub </span><span class="m">_InitializeClass</span> <span class="s">{</span>
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150 137 <span class="c">#Class name...</span>
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151 138 <span class="i">$ClassName</span> = <span class="w">__PACKAGE__</span><span class="sc">;</span>
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152 139
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153 140 <span class="s">}</span>
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154 141
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155 142 <span class="c"># Initialize object data for reading fingerprints SD file...</span>
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156 143 <span class="c">#</span>
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157 <a name="_InitializeFingerprintsSDFileIORead-"></a> 144 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIORead</span> <span class="s">{</span>
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158 145 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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159 146
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160 147 <span class="c"># Compound ID mode to use for retrieving compound IDs for fingerprints...</span>
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161 148 <span class="c">#</span>
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162 149 <span class="c"># Specify how to generate compound IDs: use a SD file datafield value; use molname line from</span>
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163 150 <span class="c"># SD file; generate a sequential ID with specific prefix; use combination of both MolName and</span>
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164 151 <span class="c"># LabelPrefix with usage of LabelPrefix values for empty molname lines.</span>
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165 152 <span class="c">#</span>
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166 153 <span class="c"># Possible values: DataField, MolName, LabelPrefix, or MolNameOrLabelPrefix. Default: LabelPrefix.</span>
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167 154 <span class="c">#</span>
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168 155 <span class="c"># For MolNameAndLabelPrefix value of CompoundIDMode, molname line in SD file takes precedence over</span>
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169 156 <span class="c"># sequential compound IDs generated using LabelPrefix and only empty molname values are replaced</span>
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170 157 <span class="c"># with sequential compound IDs.</span>
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171 158 <span class="c">#</span>
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172 159 <span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} = <span class="q">'LabelPrefix'</span><span class="sc">;</span>
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173 160
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174 161 <span class="c">#</span>
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175 162 <span class="c"># Compound ID data field label name whose value is used as compound ID during DatafField value of</span>
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176 163 <span class="c"># CompoundIDMode</span>
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177 164 <span class="c">#</span>
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178 165 <span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>} = <span class="k">undef</span><span class="sc">;</span>
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179 166
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180 167 <span class="c"># A prefix string used for generating compound IDs like LabelPrefixString<Number> during LabelPrefix</span>
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181 168 <span class="c"># or MolNameOrLabelPrefix value of CompoundIDMode. Default value, Cmpd, generates compound IDs</span>
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182 169 <span class="c"># which look like Cmpd<Number>.</span>
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183 170 <span class="c">#</span>
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184 171 <span class="i">$This</span>->{<span class="w">CompoundIDPrefix</span>} = <span class="q">'Cmpd'</span><span class="sc">;</span>
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185 172
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186 173 <span class="c"># By default, the fingerprints data corresponding to FingerprintsCol is assumed to</span>
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187 174 <span class="c"># be valid and no validation is performed before generating fingerprints objects...</span>
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188 175 <span class="c">#</span>
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189 176 <span class="i">$This</span>->{<span class="w">ValidateData</span>} = <span class="n">1</span><span class="sc">;</span>
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190 177
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191 178 <span class="c"># Level of detail to print during validation of data for invalid or missing data...</span>
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192 179 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="n">1</span><span class="sc">;</span>
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193 180
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194 181 <span class="c"># Number of missing and invalid fingerprints string data compound strings...</span>
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195 182 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithMissingData</span>} = <span class="n">0</span><span class="sc">;</span>
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196 183 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithInvalidData</span>} = <span class="n">0</span><span class="sc">;</span>
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197 184
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198 185 <span class="c"># Compound ID for current fingerprints string...</span>
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199 186 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span>
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200 187
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201 188 <span class="c"># Compound data field labels and values map for current compound data...</span>
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202 189 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
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203 190
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204 191 <span class="c"># Status of data in fingerprints SD file...</span>
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205 192 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="n">0</span><span class="sc">;</span>
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206 193
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207 194 <span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} = <span class="n">0</span><span class="sc">;</span>
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208 195 <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} = <span class="n">0</span><span class="sc">;</span>
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209 196
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210 197 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
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211 198
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212 199 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
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213 200 <span class="s">}</span>
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214 201
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215 202 <span class="c"># Initialize object data for writing fingerprints SD file...</span>
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216 203 <span class="c">#</span>
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217 <a name="_InitializeFingerprintsSDFileIOWrite-"></a> 204 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOWrite</span> <span class="s">{</span>
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218 205 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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219 206
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220 207 <span class="c"># Fingerprints bit vector string format...</span>
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221 208 <span class="c">#</span>
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222 209 <span class="c"># Possible values: BinaryString or HexadecimalString [Default]</span>
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223 210 <span class="c">#</span>
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224 211 <span class="c"># Default BitStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat.</span>
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225 212 <span class="c">#</span>
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226 213 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span>
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227 214
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228 215 <span class="c"># Bits order in fingerprints bit vector string...</span>
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229 216 <span class="c">#</span>
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230 217 <span class="c"># Ascending - First bit in each byte as the lowest bit [Default]</span>
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231 218 <span class="c"># Descending - First bit in each byte as the highest bit</span>
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232 219 <span class="c">#</span>
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233 220 <span class="c"># Default BitsOrder is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder.</span>
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234 221 <span class="c">#</span>
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235 222 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
236 223
|
|
|
237 224 <span class="c"># Fingerprints vector string format...</span>
|
|
|
238 225 <span class="c">#</span>
|
|
|
239 226 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span>
|
|
|
240 227 <span class="c">#</span>
|
|
|
241 228 <span class="c"># Default VectorStringFormat is set during first write using Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat.</span>
|
|
|
242 229 <span class="c"># For fingerprints vector object containing vector NumericalValues, it corresponds to IDsAndValuesString; othwerwise,</span>
|
|
|
243 230 <span class="c"># it's set to ValuesString.</span>
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|
244 231 <span class="c">#</span>
|
|
|
245 232 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
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246 233
|
|
|
247 234 <span class="c"># Overwriting existing file...</span>
|
|
|
248 235 <span class="i">$This</span>->{<span class="w">Overwrite</span>} = <span class="n">0</span><span class="sc">;</span>
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|
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249 236
|
|
|
250 237 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
251 238 <span class="s">}</span>
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252 239
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|
253 240 <span class="c"># Initialize object values...</span>
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254 <a name="_InitializeFingerprintsSDFileIOProperties-"></a> 241 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOProperties</span> <span class="s">{</span>
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255 242 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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|
256 243
|
|
|
257 244 <span class="c"># All other property names and values along with all Set/Get<PropertyName> methods</span>
|
|
|
258 245 <span class="c"># are implemented on-demand using ObjectProperty class.</span>
|
|
|
259 246
|
|
|
260 247 <span class="k">my</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">$MethodName</span><span class="s">)</span><span class="sc">;</span>
|
|
|
261 248 <span class="k">while</span> <span class="s">(</span><span class="s">(</span><span class="i">$Name</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="k">each</span> <span class="i">%NamesAndValues</span><span class="s">)</span> <span class="s">{</span>
|
|
|
262 249 <span class="i">$MethodName</span> = <span class="q">"Set${Name}"</span><span class="sc">;</span>
|
|
|
263 250 <span class="i">$This</span><span class="i">->$MethodName</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="sc">;</span>
|
|
|
264 251 <span class="s">}</span>
|
|
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265 252
|
|
|
266 253 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
267 254 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying file name..."</span><span class="sc">;</span>
|
|
|
268 255 <span class="s">}</span>
|
|
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269 256
|
|
|
270 257 <span class="c"># Make sure it's a fingerprints file...</span>
|
|
|
271 258 <span class="i">$Name</span> = <span class="i">$NamesAndValues</span>{<span class="w">Name</span>}<span class="sc">;</span>
|
|
|
272 259 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->IsFingerprintsSDFile</span><span class="s">(</span><span class="i">$Name</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
273 260 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $Name, doesn't appear to be fingerprints format..."</span><span class="sc">;</span>
|
|
|
274 261 <span class="s">}</span>
|
|
|
275 262
|
|
|
276 263 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^Read$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
277 264 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOReadProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
|
|
|
278 265 <span class="s">}</span>
|
|
|
279 266 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span><span class="i">->GetMode</span><span class="s">(</span><span class="s">)</span> =~ <span class="q">/^(Write|Append)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
280 267 <span class="i">$This</span><span class="i">->_InitializeFingerprintsSDFileIOWriteProperties</span><span class="s">(</span><span class="i">%NamesAndValues</span><span class="s">)</span><span class="sc">;</span>
|
|
|
281 268 <span class="s">}</span>
|
|
|
282 269
|
|
|
283 270 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
284 271 <span class="s">}</span>
|
|
|
285 272
|
|
|
286 273 <span class="c"># Initialize object properties for reading fingerprints SD file...</span>
|
|
|
287 274 <span class="c">#</span>
|
|
|
288 <a name="_InitializeFingerprintsSDFileIOReadProperties-"></a> 275 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOReadProperties</span> <span class="s">{</span>
|
|
|
289 276 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
290 277
|
|
|
291 278 <span class="c"># Set default value for FingerprintsStringMode...</span>
|
|
|
292 279 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
293 280 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span>
|
|
|
294 281 <span class="s">}</span>
|
|
|
295 282
|
|
|
296 283 <span class="c"># Set default value for FingerprintsFieldLabel...</span>
|
|
|
297 284 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
298 285 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span>
|
|
|
299 286 <span class="s">}</span>
|
|
|
300 287
|
|
|
301 288 <span class="c"># Check compound ID data field...</span>
|
|
|
302 289 <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^DataField$/i</span><span class="s">)</span> && <span class="s">(</span>!<span class="k">defined</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>}<span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
303 290 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->: Object can't be instantiated: Compound ID data field lable must be specifed using \"CompoundIDFieldLabel\" during \"DataField\" value of \"CompoundIDMode\"..."</span><span class="sc">;</span>
|
|
|
304 291 <span class="s">}</span>
|
|
|
305 292
|
|
|
306 293 <span class="i">$This</span><span class="i">->_PrepareForReadingFingerprintsSDFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
307 294
|
|
|
308 295 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
309 296 <span class="s">}</span>
|
|
|
310 297
|
|
|
311 298 <span class="c"># Initialize object properties for writing fingerprints SD file...</span>
|
|
|
312 299 <span class="c">#</span>
|
|
|
313 <a name="_InitializeFingerprintsSDFileIOWriteProperties-"></a> 300 <span class="k">sub </span><span class="m">_InitializeFingerprintsSDFileIOWriteProperties</span> <span class="s">{</span>
|
|
|
314 301 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">%NamesAndValues</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
315 302
|
|
|
316 303 <span class="c"># Check FingerprintsStringMode value...</span>
|
|
|
317 304 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$NamesAndValues</span>{<span class="w">FingerprintsStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
318 305 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated without specifying FingerprintsStringMode..."</span><span class="sc">;</span>
|
|
|
319 306 <span class="s">}</span>
|
|
|
320 307
|
|
|
321 308 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} !~ <span class="q">/^(FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
322 309 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->: Object can't be instantiated: FingerprintsStringMode value, $This->{FingerprintsStringMode}, is not valid; Supported values for write/append: FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span>
|
|
|
323 310 <span class="s">}</span>
|
|
|
324 311
|
|
|
325 312 <span class="c"># Set default value for FingerprintsFieldLabel...</span>
|
|
|
326 313 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
327 314 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="q">'Fingerprints'</span><span class="sc">;</span>
|
|
|
328 315 <span class="s">}</span>
|
|
|
329 316
|
|
|
330 317 <span class="i">$This</span><span class="i">->_PrepareForWritingFingerprintsSDFileData</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
331 318
|
|
|
332 319 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
333 320 <span class="s">}</span>
|
|
|
334 321
|
|
|
335 322 <span class="c"># Set FingerprintsStringMode...</span>
|
|
|
336 323 <span class="c">#</span>
|
|
|
337 <a name="SetFingerprintsStringMode-"></a> 324 <span class="k">sub </span><span class="m">SetFingerprintsStringMode</span> <span class="s">{</span>
|
|
|
338 325 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
339 326
|
|
|
340 327 <span class="c"># AutoDetect - automatically detect format of fingerprints string</span>
|
|
|
341 328 <span class="c"># FingerprintsBitVectorString - Bit vector fingerprints string format</span>
|
|
|
342 329 <span class="c"># FingerprintsVectorString - Vector fingerprints string format</span>
|
|
|
343 330
|
|
|
344 331 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(AutoDetect|FingerprintsBitVectorString|FingerprintsVectorString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
345 332 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetFingerprintsStringMode: FingerprintsStringMode value, $Value, is not valid; Supported values: AutoDetect, FingerprintsBitVectorString or FingerprintsVectorString..."</span><span class="sc">;</span>
|
|
|
346 333 <span class="s">}</span>
|
|
|
347 334
|
|
|
348 335 <span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
349 336
|
|
|
350 337 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
351 338 <span class="s">}</span>
|
|
|
352 339
|
|
|
353 340 <span class="c"># Set CompoundIDMode...</span>
|
|
|
354 341 <span class="c">#</span>
|
|
|
355 <a name="SetCompoundIDMode-"></a> 342 <span class="k">sub </span><span class="m">SetCompoundIDMode</span> <span class="s">{</span>
|
|
|
356 343 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
357 344
|
|
|
358 345 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(DataField|MolName|LabelPrefix|MolNameOrLabelPrefix)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
359 346 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetFingerprintsStringMode: CompoundIDMode value, $Value, is not valid; Supported values: DataField, MolName, LabelPrefix, or MolNameOrLabelPrefix..."</span><span class="sc">;</span>
|
|
|
360 347 <span class="s">}</span>
|
|
|
361 348
|
|
|
362 349 <span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
363 350
|
|
|
364 351 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
365 352 <span class="s">}</span>
|
|
|
366 353
|
|
|
367 354 <span class="c"># Set DetailLevel...</span>
|
|
|
368 355 <span class="c">#</span>
|
|
|
369 <a name="SetDetailLevel-"></a> 356 <span class="k">sub </span><span class="m">SetDetailLevel</span> <span class="s">{</span>
|
|
|
370 357 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
371 358
|
|
|
372 359 <span class="k">if</span> <span class="s">(</span>!<span class="i">TextUtil::IsPositiveInteger</span><span class="s">(</span><span class="i">$Value</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
373 360 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetDetailLevel: DetailLevel value, $Value, is not valid; Supported values: > 0..."</span><span class="sc">;</span>
|
|
|
374 361 <span class="s">}</span>
|
|
|
375 362
|
|
|
376 363 <span class="i">$This</span>->{<span class="w">DetailLevel</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
377 364
|
|
|
378 365 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
379 366 <span class="s">}</span>
|
|
|
380 367
|
|
|
381 368 <span class="c"># Set BitStringFormat...</span>
|
|
|
382 369 <span class="c">#</span>
|
|
|
383 <a name="SetBitStringFormat-"></a> 370 <span class="k">sub </span><span class="m">SetBitStringFormat</span> <span class="s">{</span>
|
|
|
384 371 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
385 372
|
|
|
386 373 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(BinaryString|HexadecimalString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
387 374 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitStringFormat: BitStringFormat value, $Value, is not valid; Supported values: BinaryString or HexadecimalString..."</span><span class="sc">;</span>
|
|
|
388 375 <span class="s">}</span>
|
|
|
389 376
|
|
|
390 377 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
391 378
|
|
|
392 379 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
393 380 <span class="s">}</span>
|
|
|
394 381
|
|
|
395 382 <span class="c"># Set BitsOrder...</span>
|
|
|
396 383 <span class="c">#</span>
|
|
|
397 <a name="SetBitsOrder-"></a> 384 <span class="k">sub </span><span class="m">SetBitsOrder</span> <span class="s">{</span>
|
|
|
398 385 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
399 386
|
|
|
400 387 <span class="c"># Ascending - First bit in each byte as the lowest bit</span>
|
|
|
401 388 <span class="c"># Descending - First bit in each byte as the highest bit</span>
|
|
|
402 389 <span class="c">#</span>
|
|
|
403 390 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(Ascending|Descending)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
404 391 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetBitsOrder: FingerprintsStringMode value, $Value, is not valid; Supported values: Ascending or Descending..."</span><span class="sc">;</span>
|
|
|
405 392 <span class="s">}</span>
|
|
|
406 393
|
|
|
407 394 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
408 395
|
|
|
409 396 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
410 397 <span class="s">}</span>
|
|
|
411 398
|
|
|
412 399 <span class="c"># Set VectorStringFormat...</span>
|
|
|
413 400 <span class="c">#</span>
|
|
|
414 <a name="SetVectorStringFormat-"></a> 401 <span class="k">sub </span><span class="m">SetVectorStringFormat</span> <span class="s">{</span>
|
|
|
415 402 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$Value</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
416 403
|
|
|
417 404 <span class="c"># Possible values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, ValuesString</span>
|
|
|
418 405
|
|
|
419 406 <span class="k">if</span> <span class="s">(</span><span class="i">$Value</span> !~ <span class="q">/^(IDsAndValuesString|IDsAndValuesPairsString|ValuesAndIDsString|ValuesAndIDsPairsString|ValuesString)$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
420 407 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->SetVectorStringFormat: FingerprintsStringMode value, $Value, is not valid; Supported values: IDsAndValuesString, IDsAndValuesPairsString, ValuesAndIDsString, ValuesAndIDsPairsString, or ValuesString..."</span><span class="sc">;</span>
|
|
|
421 408 <span class="s">}</span>
|
|
|
422 409
|
|
|
423 410 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">$Value</span><span class="sc">;</span>
|
|
|
424 411
|
|
|
425 412 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
426 413 <span class="s">}</span>
|
|
|
427 414
|
|
|
428 415 <span class="c"># Get compound string for current compound with optional removal of fingerprints data..</span>
|
|
|
429 416 <span class="c">#</span>
|
|
|
430 <a name="GetCompoundString-"></a> 417 <span class="k">sub </span><span class="m">GetCompoundString</span> <span class="s">{</span>
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431 418 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$RemoveFingerprintsData</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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|
432 419
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|
433 420 <span class="i">$RemoveFingerprintsData</span> = <span class="k">defined</span> <span class="i">$RemoveFingerprintsData</span> ? <span class="i">$RemoveFingerprintsData</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
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434 421
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435 422 <span class="k">if</span> <span class="s">(</span><span class="i">$RemoveFingerprintsData</span> && <span class="i">$This</span><span class="i">->_IsFingerprintsDataPresentInCompoundString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
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|
436 423 <span class="k">return</span> <span class="i">SDFileUtil::RemoveCmpdDataHeaderLabelAndValue</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span>
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|
|
437 424 <span class="s">}</span>
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|
|
438 425
|
|
|
439 426 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span>
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|
|
440 427 <span class="s">}</span>
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|
441 428
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|
442 429 <span class="c"># Set compound string for current compound..</span>
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|
443 430 <span class="c">#</span>
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|
444 <a name="SetCompoundString-"></a> 431 <span class="k">sub </span><span class="m">SetCompoundString</span> <span class="s">{</span>
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|
445 432 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$CompoundString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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446 433
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|
447 434 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">$CompoundString</span><span class="sc">;</span>
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448 435
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|
449 436 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
450 437 <span class="s">}</span>
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|
451 438
|
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|
452 439 <span class="c"># Get fingerprints object for current compound using fingerprints, fingerprints bit-vector</span>
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|
453 440 <span class="c"># fingerprints vector object. Fingerprints object correspond to any of supported fingerprints</span>
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|
454 441 <span class="c"># objects such as PathLengthFingerprints, ExtendedConnectivity, and so on.</span>
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455 442 <span class="c">#</span>
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|
456 <a name="GetFingerprints-"></a> 443 <span class="k">sub </span><span class="m">GetFingerprints</span> <span class="s">{</span>
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|
457 444 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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|
|
458 445
|
|
|
459 446 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="sc">;</span>
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|
|
460 447 <span class="s">}</span>
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|
|
461 448
|
|
|
462 449 <span class="c"># Set fingerprints object for current compound...</span>
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|
463 450 <span class="c">#</span>
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|
464 <a name="SetFingerprints-"></a> 451 <span class="k">sub </span><span class="m">SetFingerprints</span> <span class="s">{</span>
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465 452 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
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|
|
466 453
|
|
|
467 454 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span>
|
|
|
468 455
|
|
|
469 456 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
470 457 <span class="s">}</span>
|
|
|
471 458
|
|
|
472 459 <span class="c"># Get fingerprints string for current compound...</span>
|
|
|
473 460 <span class="c">#</span>
|
|
|
474 <a name="GetFingerprintsString-"></a> 461 <span class="k">sub </span><span class="m">GetFingerprintsString</span> <span class="s">{</span>
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|
|
475 462 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
476 463
|
|
|
477 464 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} ? <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} <span class="co">:</span> <span class="q">'None'</span><span class="sc">;</span>
|
|
|
478 465 <span class="s">}</span>
|
|
|
479 466
|
|
|
480 467 <span class="c"># Set fingerprints string for current compound...</span>
|
|
|
481 468 <span class="c">#</span>
|
|
|
482 <a name="SetFingerprintsString-"></a> 469 <span class="k">sub </span><span class="m">SetFingerprintsString</span> <span class="s">{</span>
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|
|
483 470 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
484 471
|
|
|
485 472 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span>
|
|
|
486 473
|
|
|
487 474 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
488 475 <span class="s">}</span>
|
|
|
489 476
|
|
|
490 477 <span class="c"># Does fingerprints SD file contain valid data?</span>
|
|
|
491 478 <span class="c">#</span>
|
|
|
492 <a name="IsFingerprintsFileDataValid-"></a> 479 <span class="k">sub </span><span class="m">IsFingerprintsFileDataValid</span> <span class="s">{</span>
|
|
|
493 480 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
494 481
|
|
|
495 482 <span class="k">return</span> <span class="i">$This</span>->{<span class="w">ValidFileData</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
496 483 <span class="s">}</span>
|
|
|
497 484
|
|
|
498 485 <span class="c"># Does current compound contains valid fingerprints object data?</span>
|
|
|
499 486 <span class="c">#</span>
|
|
|
500 <a name="IsFingerprintsDataValid-"></a> 487 <span class="k">sub </span><span class="m">IsFingerprintsDataValid</span> <span class="s">{</span>
|
|
|
501 488 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
502 489
|
|
|
503 490 <span class="k">return</span> <span class="k">defined</span> <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
504 491 <span class="s">}</span>
|
|
|
505 492
|
|
|
506 493 <span class="c"># Read next available compound data string, process it and generate appropriate fingerprints</span>
|
|
|
507 494 <span class="c"># objects...</span>
|
|
|
508 495 <span class="c">#</span>
|
|
|
509 <a name="Read-"></a> 496 <span class="k">sub </span><span class="m">Read</span> <span class="s">{</span>
|
|
|
510 497 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
511 498
|
|
|
512 499 <span class="c"># Read compound data string...</span>
|
|
|
513 500 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ReadCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
514 501 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span>
|
|
|
515 502 <span class="s">}</span>
|
|
|
516 503
|
|
|
517 504 <span class="c"># No need to process invalid SD file with invalid data...</span>
|
|
|
518 505 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">ValidFileData</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
519 506 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
520 507 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
521 508 <span class="s">}</span>
|
|
|
522 509 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
523 510 <span class="s">}</span>
|
|
|
524 511
|
|
|
525 512 <span class="c"># Perform data validation...</span>
|
|
|
526 513 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
527 514 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span><span class="i">->_ValidateReadCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
528 515 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
529 516 <span class="s">}</span>
|
|
|
530 517 <span class="s">}</span>
|
|
|
531 518
|
|
|
532 519 <span class="c"># Setup fingerprints string after checking again to handle problematic data for</span>
|
|
|
533 520 <span class="c"># non-validated compound string data...</span>
|
|
|
534 521 <span class="c">#</span>
|
|
|
535 522 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span>
|
|
|
536 523 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span>
|
|
|
537 524 <span class="k">if</span> <span class="s">(</span><span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
538 525 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="sc">;</span>
|
|
|
539 526 <span class="s">}</span>
|
|
|
540 527
|
|
|
541 528 <span class="c"># Generate fingeprints object...</span>
|
|
|
542 529 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
543 530
|
|
|
544 531 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span>
|
|
|
545 532 <span class="i">$This</span><span class="i">->_GenerateCompoundID</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
546 533
|
|
|
547 534 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
548 535 <span class="s">}</span>
|
|
|
549 536
|
|
|
550 537 <span class="c"># Read next available compound data string, process it and generate appropriate fingerprints</span>
|
|
|
551 538 <span class="c"># objects...</span>
|
|
|
552 539 <span class="c">#</span>
|
|
|
553 <a name="Next-"></a> 540 <span class="k">sub </span><span class="m">Next</span> <span class="s">{</span>
|
|
|
554 541 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
555 542
|
|
|
556 543 <span class="k">return</span> <span class="i">$This</span><span class="i">->Read</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
557 544 <span class="s">}</span>
|
|
|
558 545
|
|
|
559 546 <span class="c"># Read compound data string...</span>
|
|
|
560 547 <span class="c">#</span>
|
|
|
561 <a name="_ReadCompoundDataString-"></a> 548 <span class="k">sub </span><span class="m">_ReadCompoundDataString</span> <span class="s">{</span>
|
|
|
562 549 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
563 550 <span class="k">my</span><span class="s">(</span><span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span>
|
|
|
564 551
|
|
|
565 552 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
566 553 <span class="i">$This</span><span class="i">->_ProcessFirstCompoundDataStringRead</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
567 554 <span class="s">}</span>
|
|
|
568 555
|
|
|
569 556 <span class="c"># Initialize data for current compound data string...</span>
|
|
|
570 557 <span class="i">$This</span><span class="i">->_InitializeReadCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
571 558
|
|
|
572 559 <span class="c"># Get next compound data line...</span>
|
|
|
573 560 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">SDFileUtil::ReadCmpdString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
574 561 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
575 562 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
576 563 <span class="s">}</span>
|
|
|
577 564
|
|
|
578 565 <span class="i">$This</span>->{<span class="w">CompoundNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
579 566
|
|
|
580 567 <span class="c"># Set up data field labels and values...</span>
|
|
|
581 568 <span class="i">@CmpdLines</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span>
|
|
|
582 569 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}} = <span class="i">SDFileUtil::GetCmpdDataHeaderLabelsAndValues</span><span class="s">(</span>\<span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span>
|
|
|
583 570
|
|
|
584 571 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
585 572 <span class="s">}</span>
|
|
|
586 573
|
|
|
587 574 <span class="c"># Initialize compound data string for reading...</span>
|
|
|
588 575 <span class="c">#</span>
|
|
|
589 <a name="_InitializeReadCompoundDataString-"></a> 576 <span class="k">sub </span><span class="m">_InitializeReadCompoundDataString</span> <span class="s">{</span>
|
|
|
590 577 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
591 578
|
|
|
592 579 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
593 580 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
594 581
|
|
|
595 582 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
596 583
|
|
|
597 584 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
598 585 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
599 586
|
|
|
600 587 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
601 588 <span class="s">}</span>
|
|
|
602 589
|
|
|
603 590 <span class="c"># Validate compound data string containing fingerprints data...</span>
|
|
|
604 591 <span class="c">#</span>
|
|
|
605 <a name="_ValidateReadCompoundDataString-"></a> 592 <span class="k">sub </span><span class="m">_ValidateReadCompoundDataString</span> <span class="s">{</span>
|
|
|
606 593 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
607 594 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span>
|
|
|
608 595
|
|
|
609 596 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span>
|
|
|
610 597
|
|
|
611 598 <span class="c"># Check for missing data...</span>
|
|
|
612 599 <span class="k">if</span> <span class="s">(</span>!<span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
613 600 <span class="c"># Missing data...</span>
|
|
|
614 601 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithMissingData</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
615 602 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span>
|
|
|
616 603 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains no fingerprints data: $This->{CompoundString}..."</span><span class="sc">;</span>
|
|
|
617 604 <span class="s">}</span>
|
|
|
618 605 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
|
|
|
619 606 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains no fingerprints data..."</span><span class="sc">;</span>
|
|
|
620 607 <span class="s">}</span>
|
|
|
621 608 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
622 609 <span class="s">}</span>
|
|
|
623 610
|
|
|
624 611 <span class="c"># Check for invalid data...</span>
|
|
|
625 612 <span class="k">my</span><span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="sc">;</span>
|
|
|
626 613
|
|
|
627 614 <span class="i">$InvalidFingerprintsData</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
628 615
|
|
|
629 616 <span class="k">if</span> <span class="s">(</span><span class="i">Fingerprints::FingerprintsStringUtil::AreFingerprintsStringValuesValid</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
630 617 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringTypeAndDescription</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
631 618 <span class="k">if</span> <span class="s">(</span><span class="k">defined</span><span class="s">(</span><span class="i">$FingerprintsType</span><span class="s">)</span> && <span class="k">defined</span><span class="s">(</span><span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
632 619 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} !~ <span class="q">/^$FingerprintsType$/i</span> || <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} !~ <span class="q">/^$FingerprintsDescription$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
633 620 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
634 621 <span class="s">}</span>
|
|
|
635 622 <span class="s">}</span>
|
|
|
636 623 <span class="k">else</span> <span class="s">{</span>
|
|
|
637 624 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
638 625 <span class="s">}</span>
|
|
|
639 626 <span class="s">}</span>
|
|
|
640 627 <span class="k">else</span> <span class="s">{</span>
|
|
|
641 628 <span class="i">$InvalidFingerprintsData</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
642 629 <span class="s">}</span>
|
|
|
643 630
|
|
|
644 631 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span> <span class="s">{</span>
|
|
|
645 632 <span class="i">$This</span>->{<span class="w">NumOfCmpdsWithInvalidData</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
646 633 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">3</span><span class="s">)</span> <span class="s">{</span>
|
|
|
647 634 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains invalid fingerprints data: $This->{DataLine}..."</span><span class="sc">;</span>
|
|
|
648 635 <span class="s">}</span>
|
|
|
649 636 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">DetailLevel</span>} >= <span class="n">2</span><span class="s">)</span> <span class="s">{</span>
|
|
|
650 637 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundDataString: Compound number $This->{CompoundNum} contains invalid fingerprints data..."</span><span class="sc">;</span>
|
|
|
651 638 <span class="s">}</span>
|
|
|
652 639 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
653 640 <span class="s">}</span>
|
|
|
654 641
|
|
|
655 642 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
656 643 <span class="s">}</span>
|
|
|
657 644
|
|
|
658 645 <span class="c"># Setup fingerprints compound ID for fingerprints string...</span>
|
|
|
659 <a name="_GenerateCompoundID-"></a> 646 <span class="k">sub </span><span class="m">_GenerateCompoundID</span> <span class="s">{</span>
|
|
|
660 647 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
661 648 <span class="k">my</span><span class="s">(</span><span class="i">$CompoundID</span><span class="cm">,</span> <span class="i">$MolName</span><span class="s">)</span><span class="sc">;</span>
|
|
|
662 649
|
|
|
663 650 <span class="i">$CompoundID</span> = <span class="q">''</span><span class="sc">;</span>
|
|
|
664 651
|
|
|
665 652 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^LabelPrefix$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
666 653 <span class="i">$CompoundID</span> = <span class="q">"$This->{CompoundIDPrefix}$This->{CompoundNum}"</span><span class="sc">;</span>
|
|
|
667 654 <span class="s">}</span>
|
|
|
668 655 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^DataField$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
669 656 <span class="k">my</span><span class="s">(</span><span class="i">$SpecifiedDataField</span><span class="s">)</span><span class="sc">;</span>
|
|
|
670 657 <span class="i">$SpecifiedDataField</span> = <span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>}<span class="sc">;</span>
|
|
|
671 658 <span class="i">$CompoundID</span> = <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$SpecifiedDataField</span>} ? <span class="i">$This</span>->{<span class="w">DataFieldLabelsAndValues</span>}{<span class="i">$SpecifiedDataField</span>} <span class="co">:</span> <span class="q">''</span><span class="sc">;</span>
|
|
|
672 659 <span class="s">}</span>
|
|
|
673 660 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^MolNameOrLabelPrefix$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
674 661 <span class="s">(</span><span class="i">$MolName</span><span class="s">)</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span>
|
|
|
675 662 <span class="i">$CompoundID</span> = <span class="i">TextUtil::IsNotEmpty</span><span class="s">(</span><span class="i">$MolName</span><span class="s">)</span> ? <span class="i">$MolName</span> <span class="co">:</span> <span class="q">"$This->{CompoundIDPrefix}$This->{CompoundNum}"</span><span class="sc">;</span>
|
|
|
676 663 <span class="s">}</span>
|
|
|
677 664 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^MolName$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
678 665 <span class="s">(</span><span class="i">$MolName</span><span class="s">)</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span>
|
|
|
679 666 <span class="i">$CompoundID</span> = <span class="i">$MolName</span><span class="sc">;</span>
|
|
|
680 667 <span class="s">}</span>
|
|
|
681 668
|
|
|
682 669 <span class="i">$This</span>->{<span class="w">CompoundID</span>} = <span class="i">$CompoundID</span><span class="sc">;</span>
|
|
|
683 670
|
|
|
684 671 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
685 672 <span class="s">}</span>
|
|
|
686 673
|
|
|
687 674 <span class="c"># Process first compound data string read...</span>
|
|
|
688 675 <span class="c">#</span>
|
|
|
689 <a name="_ProcessFirstCompoundDataStringRead-"></a> 676 <span class="k">sub </span><span class="m">_ProcessFirstCompoundDataStringRead</span> <span class="s">{</span>
|
|
|
690 677 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
691 678 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
|
|
|
692 679
|
|
|
693 680 <span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
694 681
|
|
|
695 682 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
696 683 <span class="s">}</span>
|
|
|
697 684
|
|
|
698 685 <span class="c"># Get ready for reading fingerprints SD file...</span>
|
|
|
699 686 <span class="c">#</span>
|
|
|
700 <a name="_PrepareForReadingFingerprintsSDFileData-"></a> 687 <span class="k">sub </span><span class="m">_PrepareForReadingFingerprintsSDFileData</span> <span class="s">{</span>
|
|
|
701 688 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
702 689
|
|
|
703 690 <span class="c"># Retrieve SD file data fields information....</span>
|
|
|
704 691 <span class="i">$This</span><span class="i">->_RetrieveSDFileDataFields</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
705 692
|
|
|
706 693 <span class="c"># Validate compound and fingerprints field information...</span>
|
|
|
707 694 <span class="i">$This</span><span class="i">->_ValidateReadCompoundIDField</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
708 695 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsField</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
709 696
|
|
|
710 697 <span class="c"># Validate fingeprints string mode information...</span>
|
|
|
711 698 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
712 699 <span class="i">$This</span><span class="i">->_ValidateReadFingerprintsStringMode</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
713 700 <span class="s">}</span>
|
|
|
714 701
|
|
|
715 702 <span class="c"># Set status of SD file data...</span>
|
|
|
716 703 <span class="i">$This</span>->{<span class="w">ValidFileData</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} && <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
717 704
|
|
|
718 705 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
719 706 <span class="s">}</span>
|
|
|
720 707
|
|
|
721 708 <span class="c"># Retrieve information data fields and fingerprints string...</span>
|
|
|
722 709 <span class="c">#</span>
|
|
|
723 <a name="_RetrieveSDFileDataFields-"></a> 710 <span class="k">sub </span><span class="m">_RetrieveSDFileDataFields</span> <span class="s">{</span>
|
|
|
724 711 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
725 712 <span class="k">my</span><span class="s">(</span><span class="i">$SDFile</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="cm">,</span> <span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span>
|
|
|
726 713
|
|
|
727 714 <span class="i">$SDFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span>
|
|
|
728 715
|
|
|
729 716 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$SDFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
730 717 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $SDFile, doesn't exist..."</span><span class="sc">;</span>
|
|
|
731 718 <span class="s">}</span>
|
|
|
732 719
|
|
|
733 720 <span class="k">if</span> <span class="s">(</span>!<span class="k">open</span> <span class="w">SDFILE</span><span class="cm">,</span> <span class="q">"$SDFile"</span><span class="s">)</span> <span class="s">{</span>
|
|
|
734 721 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: Couldn't open input SD file $SDFile: $! ..."</span><span class="sc">;</span>
|
|
|
735 722 <span class="s">}</span>
|
|
|
736 723 <span class="i">$CmpdString</span> = <span class="i">SDFileUtil::ReadCmpdString</span><span class="s">(</span>\<span class="i">*SDFILE</span><span class="s">)</span><span class="sc">;</span>
|
|
|
737 724 <span class="k">close</span> <span class="w">SDFILE</span><span class="sc">;</span>
|
|
|
738 725
|
|
|
739 726 <span class="c"># Set up data field labels and values for first compound string data...</span>
|
|
|
740 727 <span class="i">@CmpdLines</span> = <span class="k">split</span> <span class="q">"\n"</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="sc">;</span>
|
|
|
741 728
|
|
|
742 729 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
743 730 <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}} = <span class="i">SDFileUtil::GetCmpdDataHeaderLabelsAndValues</span><span class="s">(</span>\<span class="i">@CmpdLines</span><span class="s">)</span><span class="sc">;</span>
|
|
|
744 731
|
|
|
745 732 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
746 733 <span class="s">}</span>
|
|
|
747 734
|
|
|
748 735 <span class="c"># Validate compound ID field information...</span>
|
|
|
749 736 <span class="c">#</span>
|
|
|
750 <a name="_ValidateReadCompoundIDField-"></a> 737 <span class="k">sub </span><span class="m">_ValidateReadCompoundIDField</span> <span class="s">{</span>
|
|
|
751 738 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
752 739 <span class="k">my</span><span class="s">(</span><span class="i">$SpecifiedDataField</span><span class="s">)</span><span class="sc">;</span>
|
|
|
753 740
|
|
|
754 741 <span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
755 742
|
|
|
756 743 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundIDMode</span>} =~ <span class="q">/^DataField$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
757 744 <span class="i">$SpecifiedDataField</span> = <span class="i">$This</span>->{<span class="w">CompoundIDFieldLabel</span>}<span class="sc">;</span>
|
|
|
758 745 <span class="k">if</span> <span class="s">(</span>! <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}{<span class="i">$SpecifiedDataField</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
759 746 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadCompoundIDField: Compound ID data field, $SpecifiedDataField, specified using \"CompoundIDField\" in \"DataField\" \"CompoundIDMode\" doesn't exist..."</span><span class="sc">;</span>
|
|
|
760 747 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
761 748 <span class="s">}</span>
|
|
|
762 749 <span class="s">}</span>
|
|
|
763 750
|
|
|
764 751 <span class="i">$This</span>->{<span class="w">ValidCompoundIDField</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
765 752
|
|
|
766 753 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
767 754 <span class="s">}</span>
|
|
|
768 755
|
|
|
769 756 <span class="c"># Validate fingerprints string field information...</span>
|
|
|
770 757 <span class="c">#</span>
|
|
|
771 <a name="_ValidateReadFingerprintsField-"></a> 758 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsField</span> <span class="s">{</span>
|
|
|
772 759 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
773 760 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span>
|
|
|
774 761
|
|
|
775 762 <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
776 763
|
|
|
777 764 <span class="i">$FingerprintsFieldLabel</span> = <span class="q">''</span><span class="sc">;</span>
|
|
|
778 765
|
|
|
779 766 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} !~ <span class="q">/^AutoDetect$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
780 767 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span>
|
|
|
781 768 <span class="k">if</span> <span class="s">(</span>! <span class="k">exists</span> <span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
782 769 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsField: Fingerprints data field value, $FingerprintsFieldLabel, specified using \"FingerprintsFieldLabel\" doesn't exist..."</span><span class="sc">;</span>
|
|
|
783 770 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
784 771 <span class="s">}</span>
|
|
|
785 772 <span class="s">}</span>
|
|
|
786 773 <span class="k">else</span> <span class="s">{</span>
|
|
|
787 774 <span class="c"># Make sure default fingerprints field does exist...</span>
|
|
|
788 775 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldFound</span><span class="cm">,</span> <span class="i">$DataFieldLabel</span><span class="s">)</span><span class="sc">;</span>
|
|
|
789 776 <span class="i">$FingerprintsFieldFound</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
790 777
|
|
|
791 778 <span class="j">DATAFIELDLABEL:</span> <span class="k">for</span> <span class="i">$DataFieldLabel</span> <span class="s">(</span><span class="k">keys</span> <span class="i">%</span>{<span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}}<span class="s">)</span> <span class="s">{</span>
|
|
|
792 779 <span class="k">if</span> <span class="s">(</span><span class="i">$DataFieldLabel</span> =~ <span class="q">/Fingerprints/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
793 780 <span class="i">$FingerprintsFieldFound</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
794 781 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$DataFieldLabel</span><span class="sc">;</span>
|
|
|
795 782 <span class="k">last</span> <span class="j">DATAFIELDLABEL</span><span class="sc">;</span>
|
|
|
796 783 <span class="s">}</span>
|
|
|
797 784 <span class="s">}</span>
|
|
|
798 785 <span class="k">if</span> <span class="s">(</span>!<span class="i">$FingerprintsFieldFound</span><span class="s">)</span> <span class="s">{</span>
|
|
|
799 786 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsField: Data field label containing \"Fingerprints\" string in its name doesn't exist..."</span><span class="sc">;</span>
|
|
|
800 787 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
801 788 <span class="s">}</span>
|
|
|
802 789 <span class="s">}</span>
|
|
|
803 790
|
|
|
804 791 <span class="i">$This</span>->{<span class="w">ValidFingerprintsField</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
805 792 <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>} = <span class="i">$FingerprintsFieldLabel</span><span class="sc">;</span>
|
|
|
806 793
|
|
|
807 794 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
808 795 <span class="s">}</span>
|
|
|
809 796
|
|
|
810 797 <span class="c"># Validate fingerprints string mode information...</span>
|
|
|
811 798 <span class="c">#</span>
|
|
|
812 <a name="_ValidateReadFingerprintsStringMode-"></a> 799 <span class="k">sub </span><span class="m">_ValidateReadFingerprintsStringMode</span> <span class="s">{</span>
|
|
|
813 800 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
814 801 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsBitVectorStringMode</span><span class="cm">,</span> <span class="i">$FingerprintsVectorStringMode</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringType</span><span class="cm">,</span> <span class="i">$FirstFingerprintsStringDescription</span><span class="cm">,</span> <span class="i">$FingerprintsFieldLabel</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span><span class="sc">;</span>
|
|
|
815 802
|
|
|
816 803 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
817 804
|
|
|
818 805 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
819 806 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
820 807
|
|
|
821 808 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
822 809 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
823 810
|
|
|
824 811 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
825 812 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">0</span><span class="sc">;</span>
|
|
|
826 813
|
|
|
827 814 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">''</span><span class="sc">;</span>
|
|
|
828 815 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="q">''</span><span class="sc">;</span>
|
|
|
829 816
|
|
|
830 817 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span>
|
|
|
831 818
|
|
|
832 819 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringTypeAndDescription</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstDataFieldLabelsAndValues</span>}{<span class="i">$FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
833 820
|
|
|
834 821 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
835 822 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> !~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
836 823 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, doesn't match value, FingerprintsBitVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span>
|
|
|
837 824 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
838 825 <span class="s">}</span>
|
|
|
839 826 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
840 827 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsBitVector'</span><span class="sc">;</span>
|
|
|
841 828 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span>
|
|
|
842 829 <span class="s">}</span>
|
|
|
843 830 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
844 831 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> !~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
845 832 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, doesn't match value, FingerprintsVectorString, specified using \"FingerprintsStringMode\"..."</span><span class="sc">;</span>
|
|
|
846 833 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
847 834 <span class="s">}</span>
|
|
|
848 835 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
849 836 <span class="i">$FirstFingerprintsStringType</span> = <span class="q">'FingerprintsVector'</span><span class="sc">;</span>
|
|
|
850 837 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span>
|
|
|
851 838 <span class="s">}</span>
|
|
|
852 839 <span class="k">else</span> <span class="s">{</span>
|
|
|
853 840 <span class="c"># AutoDetect mode...</span>
|
|
|
854 841 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
855 842 <span class="i">$FingerprintsBitVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
856 843 <span class="s">}</span>
|
|
|
857 844 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
858 845 <span class="i">$FingerprintsVectorStringMode</span> = <span class="n">1</span><span class="sc">;</span>
|
|
|
859 846 <span class="s">}</span>
|
|
|
860 847 <span class="k">else</span> <span class="s">{</span>
|
|
|
861 848 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_ValidateReadFingerprintsStringMode: First fingerprint string data type, $FingerprintsType, identified during, AutoDetect, value of \"FingerprintsStringMode\" is not valid; Supported fingerprints types: FingerprintBitVector or FingerprintsVector..."</span><span class="sc">;</span>
|
|
|
862 849 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
863 850 <span class="s">}</span>
|
|
|
864 851 <span class="i">$FirstFingerprintsStringType</span> = <span class="i">$FingerprintsType</span><span class="sc">;</span>
|
|
|
865 852 <span class="i">$FirstFingerprintsStringDescription</span> = <span class="i">$FingerprintsDescription</span><span class="sc">;</span>
|
|
|
866 853 <span class="s">}</span>
|
|
|
867 854
|
|
|
868 855 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
869 856
|
|
|
870 857 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="i">$FingerprintsBitVectorStringMode</span><span class="sc">;</span>
|
|
|
871 858 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="i">$FingerprintsVectorStringMode</span><span class="sc">;</span>
|
|
|
872 859
|
|
|
873 860 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringType</span>} = <span class="i">$FirstFingerprintsStringType</span><span class="sc">;</span>
|
|
|
874 861 <span class="i">$This</span>->{<span class="w">FirstFingerprintsStringDescription</span>} = <span class="i">$FirstFingerprintsStringDescription</span><span class="sc">;</span>
|
|
|
875 862
|
|
|
876 863 <span class="k">return</span> <span class="n">1</span><span class="sc">;</span>
|
|
|
877 864 <span class="s">}</span>
|
|
|
878 865
|
|
|
879 866 <span class="c"># Write fingerprints string generated from specified fingerprints, fingerprints-bit vector, or</span>
|
|
|
880 867 <span class="c"># fingerprints vector object and other data to SD file...</span>
|
|
|
881 868 <span class="c">#</span>
|
|
|
882 <a name="WriteFingerprints-"></a> 869 <span class="k">sub </span><span class="m">WriteFingerprints</span> <span class="s">{</span>
|
|
|
883 870 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$CompoundString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
884 871
|
|
|
885 872 <span class="c"># Initialize data for current compound...</span>
|
|
|
886 873 <span class="i">$This</span><span class="i">->_InitializeWriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
887 874
|
|
|
888 875 <span class="c"># Set fingerprints object...</span>
|
|
|
889 876 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">$FingerprintsObject</span><span class="sc">;</span>
|
|
|
890 877
|
|
|
891 878 <span class="c"># Generate fingerprints string...</span>
|
|
|
892 879 <span class="i">$This</span><span class="i">->_GenerateFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
893 880
|
|
|
894 881 <span class="c"># Set and update compound string...</span>
|
|
|
895 882 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">$CompoundString</span><span class="sc">;</span>
|
|
|
896 883 <span class="i">$This</span><span class="i">->_AddFingerprintsDataToCompoundString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
897 884
|
|
|
898 885 <span class="c"># Write it out...</span>
|
|
|
899 886 <span class="i">$This</span><span class="i">->_WriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
900 887
|
|
|
901 888 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
902 889 <span class="s">}</span>
|
|
|
903 890
|
|
|
904 891 <span class="c"># Write fingerprints string and other data to SD file...</span>
|
|
|
905 892 <span class="c">#</span>
|
|
|
906 893 <span class="c"># Note:</span>
|
|
|
907 894 <span class="c"># o FingerprintsStringMode, BitStringFormat, BitsOrder, VectorStringFormat values</span>
|
|
|
908 895 <span class="c"># are ignored during writing of fingerprints and it's written to the file as it is.</span>
|
|
|
909 896 <span class="c"># o CompoundString contains no fingerprints data</span>
|
|
|
910 897 <span class="c">#</span>
|
|
|
911 <a name="WriteFingerprintsString-"></a> 898 <span class="k">sub </span><span class="m">WriteFingerprintsString</span> <span class="s">{</span>
|
|
|
912 899 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="cm">,</span> <span class="i">$CompoundString</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
913 900
|
|
|
914 901 <span class="c"># Initialize data for current compound...</span>
|
|
|
915 902 <span class="i">$This</span><span class="i">->_InitializeWriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
916 903
|
|
|
917 904 <span class="c"># Set fingerprints string...</span>
|
|
|
918 905 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">$FingerprintsString</span><span class="sc">;</span>
|
|
|
919 906
|
|
|
920 907 <span class="c"># Generate fingerprints object...</span>
|
|
|
921 908 <span class="i">$This</span><span class="i">->_GenerateFingerprintsObject</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
922 909
|
|
|
923 910 <span class="c"># Set and update compound string...</span>
|
|
|
924 911 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">$CompoundString</span><span class="sc">;</span>
|
|
|
925 912 <span class="i">$This</span><span class="i">->_AddFingerprintsDataToCompoundString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
926 913
|
|
|
927 914 <span class="c"># Write it out...</span>
|
|
|
928 915 <span class="i">$This</span><span class="i">->_WriteCompoundDataString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
929 916
|
|
|
930 917 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
931 918 <span class="s">}</span>
|
|
|
932 919
|
|
|
933 920 <span class="c"># Initialize compound data string for writing...</span>
|
|
|
934 921 <span class="c">#</span>
|
|
|
935 <a name="_InitializeWriteCompoundDataString-"></a> 922 <span class="k">sub </span><span class="m">_InitializeWriteCompoundDataString</span> <span class="s">{</span>
|
|
|
936 923 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
937 924
|
|
|
938 925 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
939 926
|
|
|
940 927 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
941 928 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
942 929
|
|
|
943 930 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
944 931 <span class="s">}</span>
|
|
|
945 932
|
|
|
946 933 <span class="c"># Writi compound data string...</span>
|
|
|
947 934 <span class="c">#</span>
|
|
|
948 <a name="_WriteCompoundDataString-"></a> 935 <span class="k">sub </span><span class="m">_WriteCompoundDataString</span> <span class="s">{</span>
|
|
|
949 936 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
950 937 <span class="k">my</span><span class="s">(</span><span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
|
|
|
951 938
|
|
|
952 939 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
953 940 <span class="i">$This</span><span class="i">->_ProcessFirstCompoundDataStringWrite</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
954 941 <span class="s">}</span>
|
|
|
955 942
|
|
|
956 943 <span class="i">$This</span>->{<span class="w">CompoundNum</span>} += <span class="n">1</span><span class="sc">;</span>
|
|
|
957 944 <span class="i">$FileHandle</span> = <span class="i">$This</span>->{<span class="w">FileHandle</span>}<span class="sc">;</span>
|
|
|
958 945
|
|
|
959 946 <span class="k">print</span> <span class="i">$FileHandle</span> <span class="q">"$This->{CompoundString}\n"</span><span class="sc">;</span>
|
|
|
960 947
|
|
|
961 948 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
962 949 <span class="s">}</span>
|
|
|
963 950
|
|
|
964 951 <span class="c"># Process first compound data string write...</span>
|
|
|
965 952 <span class="c">#</span>
|
|
|
966 <a name="_ProcessFirstCompoundDataStringWrite-"></a> 953 <span class="k">sub </span><span class="m">_ProcessFirstCompoundDataStringWrite</span> <span class="s">{</span>
|
|
|
967 954 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
968 955 <span class="k">my</span><span class="s">(</span><span class="i">$Line</span><span class="cm">,</span> <span class="i">$FileHandle</span><span class="s">)</span><span class="sc">;</span>
|
|
|
969 956
|
|
|
970 957 <span class="i">$This</span>->{<span class="w">FirstCompoundDataIO</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
971 958
|
|
|
972 959 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
973 960 <span class="s">}</span>
|
|
|
974 961
|
|
|
975 962 <span class="c"># Get ready for writing fingerprints SD file...</span>
|
|
|
976 963 <span class="c">#</span>
|
|
|
977 <a name="_PrepareForWritingFingerprintsSDFileData-"></a> 964 <span class="k">sub </span><span class="m">_PrepareForWritingFingerprintsSDFileData</span> <span class="s">{</span>
|
|
|
978 965 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
979 966 <span class="k">my</span><span class="s">(</span><span class="i">$SDFile</span><span class="s">)</span><span class="sc">;</span>
|
|
|
980 967
|
|
|
981 968 <span class="i">$SDFile</span> = <span class="i">$This</span>->{<span class="w">Name</span>}<span class="sc">;</span>
|
|
|
982 969 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">Overwrite</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
983 970 <span class="k">if</span> <span class="s">(</span><span class="k">-e</span> <span class="i">$SDFile</span><span class="s">)</span> <span class="s">{</span>
|
|
|
984 971 <span class="w">croak</span> <span class="q">"Error: ${ClassName}->New: Object can't be instantiated: File, $SDFile, already exist. Use overwrite option..."</span><span class="sc">;</span>
|
|
|
985 972 <span class="s">}</span>
|
|
|
986 973 <span class="s">}</span>
|
|
|
987 974
|
|
|
988 975 <span class="c"># Setup FingerprintsStringMode status...</span>
|
|
|
989 976
|
|
|
990 977 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
991 978 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
992 979 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="n">0</span><span class="sc">;</span>
|
|
|
993 980
|
|
|
994 981 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsBitVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
995 982 <span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
996 983 <span class="s">}</span>
|
|
|
997 984 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsStringMode</span>} =~ <span class="q">/^FingerprintsVectorString$/i</span><span class="s">)</span> <span class="s">{</span>
|
|
|
998 985 <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>} = <span class="n">1</span><span class="sc">;</span>
|
|
|
999 986 <span class="s">}</span>
|
|
|
1000 987
|
|
|
1001 988 <span class="i">$This</span>->{<span class="w">ValidFingerprintsStringMode</span>} = <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>} || <span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1002 989
|
|
|
1003 990 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1004 991 <span class="i">$This</span><span class="i">->_SetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1005 992 <span class="i">$This</span><span class="i">->_SetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1006 993 <span class="s">}</span>
|
|
|
1007 994 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1008 995 <span class="i">$This</span><span class="i">->_SetDefaultVectorStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1009 996 <span class="s">}</span>
|
|
|
1010 997
|
|
|
1011 998 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1012 999 <span class="s">}</span>
|
|
|
1013 1000
|
|
|
1014 1001 <span class="c"># Set default value for bit string format...</span>
|
|
|
1015 1002 <span class="c">#</span>
|
|
|
1016 <a name="_SetDefaultBitStringFormat-"></a>1003 <span class="k">sub </span><span class="m">_SetDefaultBitStringFormat</span> <span class="s">{</span>
|
|
|
1017 1004 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1018 1005
|
|
|
1019 1006 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1020 1007 <span class="i">$This</span>->{<span class="w">BitStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitStringFormat</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1021 1008 <span class="s">}</span>
|
|
|
1022 1009
|
|
|
1023 1010 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1024 1011 <span class="s">}</span>
|
|
|
1025 1012
|
|
|
1026 1013 <span class="c"># Set default value for bit string format...</span>
|
|
|
1027 1014 <span class="c">#</span>
|
|
|
1028 <a name="_SetDefaultBitsOrder-"></a>1015 <span class="k">sub </span><span class="m">_SetDefaultBitsOrder</span> <span class="s">{</span>
|
|
|
1029 1016 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1030 1017
|
|
|
1031 1018 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1032 1019 <span class="i">$This</span>->{<span class="w">BitsOrder</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultBitsOrder</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1033 1020 <span class="s">}</span>
|
|
|
1034 1021
|
|
|
1035 1022 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1036 1023 <span class="s">}</span>
|
|
|
1037 1024
|
|
|
1038 1025 <span class="c"># Set default value for vector string format...</span>
|
|
|
1039 1026 <span class="c">#</span>
|
|
|
1040 <a name="_SetDefaultVectorStringFormat-"></a>1027 <span class="k">sub </span><span class="m">_SetDefaultVectorStringFormat</span> <span class="s">{</span>
|
|
|
1041 1028 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1042 1029
|
|
|
1043 1030 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} && <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1044 1031 <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GetDefaultVectorStringFormat</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1045 1032 <span class="s">}</span>
|
|
|
1046 1033
|
|
|
1047 1034 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1048 1035 <span class="s">}</span>
|
|
|
1049 1036
|
|
|
1050 1037 <span class="c"># Add fingerprints data to compound string...</span>
|
|
|
1051 1038 <span class="c">#</span>
|
|
|
1052 <a name="_AddFingerprintsDataToCompoundString-"></a>1039 <span class="k">sub </span><span class="m">_AddFingerprintsDataToCompoundString</span> <span class="s">{</span>
|
|
|
1053 1040 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1054 1041 <span class="k">my</span><span class="s">(</span><span class="i">$CmpdString</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1055 1042
|
|
|
1056 1043 <span class="c"># Check and remove existing fingerprints data...</span>
|
|
|
1057 1044 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span><span class="i">->_IsFingerprintsDataPresentInCompoundString</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1058 1045 <span class="w">carp</span> <span class="q">"Warning: ${ClassName}->_AddFingerprintsDataToCompoundString: The compound string already contains fingerprints data corresponding to fingerprints field label $This->{FingerprintsFieldLabel}; It has been replaced with new fingerprints data..."</span><span class="sc">;</span>
|
|
|
1059 1046 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="i">SDFileUtil::RemoveCmpdDataHeaderLabelAndValue</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1060 1047 <span class="s">}</span>
|
|
|
1061 1048
|
|
|
1062 1049 <span class="i">$CmpdString</span> = <span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="sc">;</span>
|
|
|
1063 1050
|
|
|
1064 1051 <span class="i">$CmpdString</span> =~ <span class="q">s/\$\$\$\$$//</span><span class="sc">;</span>
|
|
|
1065 1052
|
|
|
1066 1053 <span class="i">$This</span>->{<span class="w">CompoundString</span>} = <span class="q">"${CmpdString}> <$This->{FingerprintsFieldLabel}>\n$This->{FingerprintsString}\n\n\$\$\$\$"</span><span class="sc">;</span>
|
|
|
1067 1054
|
|
|
1068 1055 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1069 1056 <span class="s">}</span>
|
|
|
1070 1057
|
|
|
1071 1058 <span class="c"># Is fingerprints data already present in compound string?</span>
|
|
|
1072 1059 <span class="c">#</span>
|
|
|
1073 <a name="_IsFingerprintsDataPresentInCompoundString-"></a>1060 <span class="k">sub </span><span class="m">_IsFingerprintsDataPresentInCompoundString</span> <span class="s">{</span>
|
|
|
1074 1061 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1075 1062 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFieldLabel</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1076 1063
|
|
|
1077 1064 <span class="k">if</span> <span class="s">(</span><span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>}<span class="s">)</span> || <span class="i">TextUtil::IsEmpty</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1078 1065 <span class="k">return</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1079 1066 <span class="s">}</span>
|
|
|
1080 1067
|
|
|
1081 1068 <span class="i">$FingerprintsFieldLabel</span> = <span class="i">$This</span>->{<span class="w">FingerprintsFieldLabel</span>}<span class="sc">;</span>
|
|
|
1082 1069
|
|
|
1083 1070 <span class="k">return</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">CompoundString</span>} =~ <span class="q">/<$FingerprintsFieldLabel>/</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1084 1071 <span class="s">}</span>
|
|
|
1085 1072
|
|
|
1086 1073 <span class="c"># Generate fingerprints object using current fingerprints string...</span>
|
|
|
1087 1074 <span class="c">#</span>
|
|
|
1088 <a name="_GenerateFingerprintsObject-"></a>1075 <span class="k">sub </span><span class="m">_GenerateFingerprintsObject</span> <span class="s">{</span>
|
|
|
1089 1076 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1090 1077
|
|
|
1091 1078 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="k">undef</span><span class="sc">;</span>
|
|
|
1092 1079
|
|
|
1093 1080 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1094 1081 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1095 1082 <span class="s">}</span>
|
|
|
1096 1083
|
|
|
1097 1084 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1098 1085 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsBitVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1099 1086 <span class="s">}</span>
|
|
|
1100 1087 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1101 1088 <span class="i">$This</span>->{<span class="w">FingerprintsObject</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::ParseFingerprintsVectorString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsString</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1102 1089 <span class="s">}</span>
|
|
|
1103 1090 <span class="k">else</span> <span class="s">{</span>
|
|
|
1104 1091 <span class="k">return</span> <span class="k">undef</span><span class="sc">;</span>
|
|
|
1105 1092 <span class="s">}</span>
|
|
|
1106 1093
|
|
|
1107 1094 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1108 1095 <span class="s">}</span>
|
|
|
1109 1096
|
|
|
1110 1097 <span class="c"># Generate fingerprints string using current fingerprints object...</span>
|
|
|
1111 1098 <span class="c">#</span>
|
|
|
1112 <a name="_GenerateFingerprintsString-"></a>1099 <span class="k">sub </span><span class="m">_GenerateFingerprintsString</span> <span class="s">{</span>
|
|
|
1113 1100 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1114 1101
|
|
|
1115 1102 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="q">''</span><span class="sc">;</span>
|
|
|
1116 1103
|
|
|
1117 1104 <span class="k">if</span> <span class="s">(</span>!<span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1118 1105 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1119 1106 <span class="s">}</span>
|
|
|
1120 1107
|
|
|
1121 1108 <span class="k">if</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsBitVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1122 1109 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitStringFormat</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">BitsOrder</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1123 1110 <span class="s">}</span>
|
|
|
1124 1111 <span class="k">elsif</span> <span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsVectorStringMode</span>}<span class="s">)</span> <span class="s">{</span>
|
|
|
1125 1112 <span class="i">$This</span>->{<span class="w">FingerprintsString</span>} = <span class="i">Fingerprints::FingerprintsStringUtil::GenerateFingerprintsString</span><span class="s">(</span><span class="i">$This</span>->{<span class="w">FingerprintsObject</span>}<span class="cm">,</span> <span class="i">$This</span>->{<span class="w">VectorStringFormat</span>}<span class="s">)</span><span class="sc">;</span>
|
|
|
1126 1113 <span class="s">}</span>
|
|
|
1127 1114
|
|
|
1128 1115 <span class="k">return</span> <span class="i">$This</span><span class="sc">;</span>
|
|
|
1129 1116 <span class="s">}</span>
|
|
|
1130 1117
|
|
|
1131 1118 <span class="c"># Is it a fingerprints file?</span>
|
|
|
1132 <a name="IsFingerprintsSDFile-"></a>1119 <span class="k">sub </span><span class="m">IsFingerprintsSDFile ($;$)</span> <span class="s">{</span>
|
|
|
1133 1120 <span class="k">my</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1134 1121 <span class="k">my</span><span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$Status</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1135 1122
|
|
|
1136 1123 <span class="k">if</span> <span class="s">(</span><span class="s">(</span><span class="i">@_</span> == <span class="n">2</span><span class="s">)</span> && <span class="s">(</span><span class="i">_IsFingerprintsSDFileIO</span><span class="s">(</span><span class="i">$FirstParameter</span><span class="s">)</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span>
|
|
|
1137 1124 <span class="s">(</span><span class="i">$This</span><span class="cm">,</span> <span class="i">$FileName</span><span class="s">)</span> = <span class="s">(</span><span class="i">$FirstParameter</span><span class="cm">,</span> <span class="i">$SecondParameter</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1138 1125 <span class="s">}</span>
|
|
|
1139 1126 <span class="k">else</span> <span class="s">{</span>
|
|
|
1140 1127 <span class="i">$FileName</span> = <span class="i">$FirstParameter</span><span class="sc">;</span>
|
|
|
1141 1128 <span class="s">}</span>
|
|
|
1142 1129
|
|
|
1143 1130 <span class="c"># Check file extension...</span>
|
|
|
1144 1131 <span class="i">$Status</span> = <span class="i">FileUtil::CheckFileType</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="q">"sdf sd"</span><span class="s">)</span><span class="sc">;</span>
|
|
|
1145 1132
|
|
|
1146 1133 <span class="k">return</span> <span class="i">$Status</span><span class="sc">;</span>
|
|
|
1147 1134 <span class="s">}</span>
|
|
|
1148 1135
|
|
|
1149 1136 <span class="c"># Is it a FingerprintsSDFileIO object?</span>
|
|
|
1150 <a name="_IsFingerprintsSDFileIO-"></a>1137 <span class="k">sub </span><span class="m">_IsFingerprintsSDFileIO</span> <span class="s">{</span>
|
|
|
1151 1138 <span class="k">my</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span>
|
|
|
1152 1139
|
|
|
1153 1140 <span class="k">return</span> <span class="s">(</span><span class="i">Scalar::Util::blessed</span><span class="s">(</span><span class="i">$Object</span><span class="s">)</span> && <span class="i">$Object</span><span class="i">->isa</span><span class="s">(</span><span class="i">$ClassName</span><span class="s">)</span><span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span>
|
|
|
1154 1141 <span class="s">}</span>
|
|
|
1155 1142
|
|
|
1156 <a name="EOF-"></a></pre>
|
|
|
1157 <p> </p>
|
|
|
1158 <br />
|
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|
1159 <center>
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|
|
1160 <img src="../../../images/h2o2.png">
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|
1161 </center>
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1162 </body>
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1163 </html>
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