NAME
    FingerprintsFileUtil

SYNOPSIS
    use Fingerprints::FingerprintsFileUtil;

    use Fingerprints::FingerprintsFileUtil qw(:all);

DESCRIPTION
    FingerprintsFileUtil module provides the following functions:

    GetFingerprintsFileType, NewFingerprintsFileIO,
    ReadAndProcessFingerpritsData

    FingerprintsFileUtil module provides function to handle fingerprints
    data strings in FP, SD and CSV/TSV text files present in one of the
    following two types: fingerprints bit-vectors and fingerprints vector
    strings

    Example of FP file format containing fingerprints bit-vector string
    data:

        #
        # Package = MayaChemTools 7.4
        # ReleaseDate = Oct 21, 2010
        #
        # TimeStamp =  Mon Mar 7 15:14:01 2011
        #
        # FingerprintsStringType = FingerprintsBitVector
        #
        # Description = PathLengthBits:AtomicInvariantsAtomTypes:MinLength1:...
        # Size = 1024
        # BitStringFormat = HexadecimalString
        # BitsOrder = Ascending
        #
        Cmpd1 9c8460989ec8a49913991a6603130b0a19e8051c89184414953800cc21510...
        Cmpd2 000000249400840040100042011001001980410c000000001010088001120...
        ... ...
        ... ..

    Example of FP file format containing fingerprints vector string data:

        #
        # Package = MayaChemTools 7.4
        # ReleaseDate = Oct 21, 2010
        #
        # TimeStamp =  Mon Mar 7 15:14:01 2011
        #
        # FingerprintsStringType = FingerprintsVector
        #
        # Description = PathLengthBits:AtomicInvariantsAtomTypes:MinLength1:...
        # VectorStringFormat = IDsAndValuesString
        # VectorValuesType = NumericalValues
        #
        Cmpd1 338;C F N O C:C C:N C=O CC CF CN CO C:C:C C:C:N C:CC C:CF C:CN C:
        N:C C:NC CC:N CC=O CCC CCN CCO CNC NC=O O=CO C:C:C:C C:C:C:N C:C:CC...;
        33 1 2 5 21 2 2 12 1 3 3 20 2 10 2 2 1 2 2 2 8 2 5 1 1 1 19 2 8 2 2 2 2
        6 2 2 2 2 2 2 2 2 3 2 2 1 4 1 5 1 1 18 6 2 2 1 2 10 2 1 2 1 2 2 2 2 ...
        Cmpd2 103;C N O C=N C=O CC CN CO CC=O CCC CCN CCO CNC N=CN NC=O NCN O=C
        O C CC=O CCCC CCCN CCCO CCNC CNC=N CNC=O CNCN CCCC=O CCCCC CCCCN CC...;
        15 4 4 1 2 13 5 2 2 15 5 3 2 2 1 1 1 2 17 7 6 5 1 1 1 2 15 8 5 7 2 2 2 2
        1 2 1 1 3 15 7 6 8 3 4 4 3 2 2 1 2 3 14 2 4 7 4 4 4 4 1 1 1 2 1 1 1 ...
        ... ...
        ... ...

    Example of SD file format containing fingerprints vector string data:

        ... ...
        ... ...
        $$$$
        ... ...
        ... ...
        ... ...
        41 44  0  0  0  0  0  0  0  0999 V2000
         -3.3652    1.4499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
        ... ...
        2  3  1  0  0  0  0
        ... ...
        M  END
        >  <CmpdID>
        Test

        >  <PathLengthFingerprints>
        FingerprintsBitVector;PathLengthBits:AtomicInvariantsAtomTypes:MinLengt
        h1:MaxLength8;1024;HexadecimalString;Ascending;9c8460989ec8a49913991a66
        03130b0a19e8051c89184414953800cc2151082844a201042800130860308e8204d4028
        00831048940e44281c00060449a5000ac80c894114e006321264401600846c050164462
        08190410805000304a10205b0100e04c0038ba0fad0209c0ca8b1200012268b61c0026a
        aa0660a11014a011d46

        $$$$
        ... ...
        ... ...

    Example of CSV text file format containing fingerprints bit-vector
    string data:

        "CompoundID","PathLengthFingerprints"
        "Cmpd1","FingerprintsBitVector;PathLengthBits:AtomicInvariantsAtomTypes
        :MinLength1:MaxLength8;1024;HexadecimalString;Ascending;9c8460989ec8a4
        9913991a6603130b0a19e8051c89184414953800cc2151082844a20104280013086030
        8e8204d402800831048940e44281c00060449a5000ac80c894114e006321264401..."
        ... ...
        ... ...

    The current release of MayaChemTools supports the following types of
    fingerprint bit-vector and vector strings:

        FingerprintsVector;AtomNeighborhoods:AtomicInvariantsAtomTypes:MinRadi
        us0:MaxRadius2;41;AlphaNumericalValues;ValuesString;NR0-C.X1.BO1.H3-AT
        C1:NR1-C.X3.BO3.H1-ATC1:NR2-C.X1.BO1.H3-ATC1:NR2-C.X3.BO4-ATC1 NR0-C.X
        1.BO1.H3-ATC1:NR1-C.X3.BO3.H1-ATC1:NR2-C.X1.BO1.H3-ATC1:NR2-C.X3.BO4-A
        TC1 NR0-C.X2.BO2.H2-ATC1:NR1-C.X2.BO2.H2-ATC1:NR1-C.X3.BO3.H1-ATC1:NR2
        -C.X2.BO2.H2-ATC1:NR2-N.X3.BO3-ATC1:NR2-O.X1.BO1.H1-ATC1 NR0-C.X2.B...

        FingerprintsVector;AtomTypesCount:AtomicInvariantsAtomTypes:ArbitraryS
        ize;10;NumericalValues;IDsAndValuesString;C.X1.BO1.H3 C.X2.BO2.H2 C.X2
        .BO3.H1 C.X3.BO3.H1 C.X3.BO4 F.X1.BO1 N.X2.BO2.H1 N.X3.BO3 O.X1.BO1.H1
        O.X1.BO2;2 4 14 3 10 1 1 1 3 2

        FingerprintsVector;AtomTypesCount:SLogPAtomTypes:ArbitrarySize;16;Nume
        ricalValues;IDsAndValuesString;C1 C10 C11 C14 C18 C20 C21 C22 C5 CS F
        N11 N4 O10 O2 O9;5 1 1 1 14 4 2 1 2 2 1 1 1 1 3 1

        FingerprintsVector;AtomTypesCount:SLogPAtomTypes:FixedSize;67;OrderedN
        umericalValues;IDsAndValuesString;C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C
        12 C13 C14 C15 C16 C17 C18 C19 C20 C21 C22 C23 C24 C25 C26 C27 CS N1 N
        2 N3 N4 N5 N6 N7 N8 N9 N10 N11 N12 N13 N14 NS O1 O2 O3 O4 O5 O6 O7 O8
        O9 O10 O11 O12 OS F Cl Br I Hal P S1 S2 S3 Me1 Me2;5 0 0 0 2 0 0 0 0 1
        1 0 0 1 0 0 0 14 0 4 2 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0...

        FingerprintsVector;EStateIndicies:ArbitrarySize;11;NumericalValues;IDs
        AndValuesString;SaaCH SaasC SaasN SdO SdssC SsCH3 SsF SsOH SssCH2 SssN
        H SsssCH;24.778 4.387 1.993 25.023 -1.435 3.975 14.006 29.759 -0.073 3
        .024 -2.270

        FingerprintsVector;EStateIndicies:FixedSize;87;OrderedNumericalValues;
        ValuesString;0 0 0 0 0 0 0 3.975 0 -0.073 0 0 24.778 -2.270 0 0 -1.435
        4.387 0 0 0 0 0 0 3.024 0 0 0 0 0 0 0 1.993 0 29.759 25.023 0 0 0 0 1
        4.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
        0 0 0 0 0 0 0 0 0 0 0 0 0 0

        FingerprintsVector;ExtendedConnectivity:AtomicInvariantsAtomTypes:Radi
        us2;60;AlphaNumericalValues;ValuesString;73555770 333564680 352413391
        666191900 1001270906 1371674323 1481469939 1977749791 2006158649 21414
        08799 49532520 64643108 79385615 96062769 273726379 564565671 85514103
        5 906706094 988546669 1018231313 1032696425 1197507444 1331250018 1338
        532734 1455473691 1607485225 1609687129 1631614296 1670251330 17303...

        FingerprintsVector;ExtendedConnectivityCount:AtomicInvariantsAtomTypes
        :Radius2;60;NumericalValues;IDsAndValuesString;73555770 333564680 3524
        13391 666191900 1001270906 1371674323 1481469939 1977749791 2006158649
        2141408799 49532520 64643108 79385615 96062769 273726379 564565671...;
        3 2 1 1 14 1 2 10 4 3 1 1 1 1 2 1 2 1 1 1 2 3 1 1 2 1 3 3 8 2 2 2 6 2
        1 2 1 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1

        FingerprintsBitVector;ExtendedConnectivityBits:AtomicInvariantsAtomTyp
        es:Radius2;1024;BinaryString;Ascending;0000000000000000000000000000100
        0000000001010000000110000011000000000000100000000000000000000000100001
        1000000110000000000000000000000000010011000000000000000000000000010000
        0000000000000000000000000010000000000000000001000000000000000000000000
        0000000000010000100001000000000000101000000000000000100000000000000...

        FingerprintsVector;ExtendedConnectivity:FunctionalClassAtomTypes:Radiu
        s2;57;AlphaNumericalValues;ValuesString;24769214 508787397 850393286 8
        62102353 981185303 1231636850 1649386610 1941540674 263599683 32920567
        1 571109041 639579325 683993318 723853089 810600886 885767127 90326012
        7 958841485 981022393 1126908698 1152248391 1317567065 1421489994 1455
        632544 1557272891 1826413669 1983319256 2015750777 2029559552 20404...

        FingerprintsVector;ExtendedConnectivity:EStateAtomTypes:Radius2;62;Alp
        haNumericalValues;ValuesString;25189973 528584866 662581668 671034184
        926543080 1347067490 1738510057 1759600920 2034425745 2097234755 21450
        44754 96779665 180364292 341712110 345278822 386540408 387387308 50430
        1706 617094135 771528807 957666640 997798220 1158349170 1291258082 134
        1138533 1395329837 1420277211 1479584608 1486476397 1487556246 1566...

        FingerprintsBitVector;MACCSKeyBits;166;BinaryString;Ascending;00000000
        0000000000000000000000000000000001001000010010000000010010000000011100
        0100101010111100011011000100110110000011011110100110111111111111011111
        11111111111110111000

        FingerprintsBitVector;MACCSKeyBits;322;BinaryString;Ascending;11101011
        1110011111100101111111000111101100110000000000000011100010000000000000
        0000000000000000000000000000000000000000000000101000000000000000000000
        0000000000000000000000000000000000000000000000000000000000000000000000
        0000000000000000000000000000000000000011000000000000000000000000000000
        0000000000000000000000000000000000000000

        FingerprintsVector;MACCSKeyCount;166;OrderedNumericalValues;ValuesStri
        ng;0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
        0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 4 0 0 2 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0
        0 0 0 0 1 1 8 0 0 0 1 0 0 1 0 1 0 1 0 3 1 3 1 0 0 0 1 2 0 11 1 0 0 0
        5 0 0 1 2 0 1 1 0 0 0 0 0 1 1 0 1 1 1 1 0 4 0 0 1 1 0 4 6 1 1 1 2 1 1
        3 5 2 2 0 5 3 5 1 1 2 5 1 2 1 2 4 8 3 5 5 2 2 0 3 5 4 1

        FingerprintsVector;MACCSKeyCount;322;OrderedNumericalValues;ValuesStri
        ng;14 8 2 0 2 0 4 4 2 1 4 0 0 2 5 10 5 2 1 0 0 2 0 5 13 3 28 5 5 3 0 0
        0 4 2 1 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 5 3 0 0 0 1 0
        0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
        0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 2 0 0 0 0 0 0 0 0 0
        0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ...

        FingerprintsBitVector;PathLengthBits:AtomicInvariantsAtomTypes:MinLeng
        th1:MaxLength8;1024;BinaryString;Ascending;001000010011010101011000110
        0100010101011000101001011100110001000010001001101000001001001001001000
        0010110100000111001001000001001010100100100000000011000000101001011100
        0010000001000101010100000100111100110111011011011000000010110111001101
        0101100011000000010001000011000010100011101100001000001000100000000...

        FingerprintsVector;PathLengthCount:AtomicInvariantsAtomTypes:MinLength
        1:MaxLength8;432;NumericalValues;IDsAndValuesPairsString;C.X1.BO1.H3 2
        C.X2.BO2.H2 4 C.X2.BO3.H1 14 C.X3.BO3.H1 3 C.X3.BO4 10 F.X1.BO1 1 N.X
        2.BO2.H1 1 N.X3.BO3 1 O.X1.BO1.H1 3 O.X1.BO2 2 C.X1.BO1.H3C.X3.BO3.H1
        2 C.X2.BO2.H2C.X2.BO2.H2 1 C.X2.BO2.H2C.X3.BO3.H1 4 C.X2.BO2.H2C.X3.BO
        4 1 C.X2.BO2.H2N.X3.BO3 1 C.X2.BO3.H1:C.X2.BO3.H1 10 C.X2.BO3.H1:C....

        FingerprintsVector;PathLengthCount:MMFF94AtomTypes:MinLength1:MaxLengt
        h8;463;NumericalValues;IDsAndValuesPairsString;C5A 2 C5B 2 C=ON 1 CB 1
        8 COO 1 CR 9 F 1 N5 1 NC=O 1 O=CN 1 O=CO 1 OC=O 1 OR 2 C5A:C5B 2 C5A:N
        5 2 C5ACB 1 C5ACR 1 C5B:C5B 1 C5BC=ON 1 C5BCB 1 C=ON=O=CN 1 C=ONNC=O 1
        CB:CB 18 CBF 1 CBNC=O 1 COO=O=CO 1 COOCR 1 COOOC=O 1 CRCR 7 CRN5 1 CR
        OR 2 C5A:C5B:C5B 2 C5A:C5BC=ON 1 C5A:C5BCB 1 C5A:N5:C5A 1 C5A:N5CR ...

        FingerprintsVector;TopologicalAtomPairs:AtomicInvariantsAtomTypes:MinD
        istance1:MaxDistance10;223;NumericalValues;IDsAndValuesString;C.X1.BO1
        .H3-D1-C.X3.BO3.H1 C.X2.BO2.H2-D1-C.X2.BO2.H2 C.X2.BO2.H2-D1-C.X3.BO3.
        H1 C.X2.BO2.H2-D1-C.X3.BO4 C.X2.BO2.H2-D1-N.X3.BO3 C.X2.BO3.H1-D1-...;
        2 1 4 1 1 10 8 1 2 6 1 2 2 1 2 1 2 2 1 2 1 5 1 10 12 2 2 1 2 1 9 1 3 1
        1 1 2 2 1 3 6 1 6 14 2 2 2 3 1 3 1 8 2 2 1 3 2 6 1 2 2 5 1 3 1 23 1...

        FingerprintsVector;TopologicalAtomPairs:FunctionalClassAtomTypes:MinDi
        stance1:MaxDistance10;144;NumericalValues;IDsAndValuesString;Ar-D1-Ar
        Ar-D1-Ar.HBA Ar-D1-HBD Ar-D1-Hal Ar-D1-None Ar.HBA-D1-None HBA-D1-NI H
        BA-D1-None HBA.HBD-D1-NI HBA.HBD-D1-None HBD-D1-None NI-D1-None No...;
        23 2 1 1 2 1 1 1 1 2 1 1 7 28 3 1 3 2 8 2 1 1 1 5 1 5 24 3 3 4 2 13 4
        1 1 4 1 5 22 4 4 3 1 19 1 1 1 1 1 2 2 3 1 1 8 25 4 5 2 3 1 26 1 4 1 ...

        FingerprintsVector;TopologicalAtomTorsions:AtomicInvariantsAtomTypes;3
        3;NumericalValues;IDsAndValuesString;C.X1.BO1.H3-C.X3.BO3.H1-C.X3.BO4-
        C.X3.BO4 C.X1.BO1.H3-C.X3.BO3.H1-C.X3.BO4-N.X3.BO3 C.X2.BO2.H2-C.X2.BO
        2.H2-C.X3.BO3.H1-C.X2.BO2.H2 C.X2.BO2.H2-C.X2.BO2.H2-C.X3.BO3.H1-O...;
        2 2 1 1 2 2 1 1 3 4 4 8 4 2 2 6 2 2 1 2 1 1 2 1 1 2 6 2 4 2 1 3 1

        FingerprintsVector;TopologicalAtomTorsions:EStateAtomTypes;36;Numerica
        lValues;IDsAndValuesString;aaCH-aaCH-aaCH-aaCH aaCH-aaCH-aaCH-aasC aaC
        H-aaCH-aasC-aaCH aaCH-aaCH-aasC-aasC aaCH-aaCH-aasC-sF aaCH-aaCH-aasC-
        ssNH aaCH-aasC-aasC-aasC aaCH-aasC-aasC-aasN aaCH-aasC-ssNH-dssC a...;
        4 4 8 4 2 2 6 2 2 2 4 3 2 1 3 3 2 2 2 1 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 2

        FingerprintsVector;TopologicalAtomTriplets:AtomicInvariantsAtomTypes:M
        inDistance1:MaxDistance10;3096;NumericalValues;IDsAndValuesString;C.X1
        .BO1.H3-D1-C.X1.BO1.H3-D1-C.X3.BO3.H1-D2 C.X1.BO1.H3-D1-C.X2.BO2.H2-D1
        0-C.X3.BO4-D9 C.X1.BO1.H3-D1-C.X2.BO2.H2-D3-N.X3.BO3-D4 C.X1.BO1.H3-D1
        -C.X2.BO2.H2-D4-C.X2.BO2.H2-D5 C.X1.BO1.H3-D1-C.X2.BO2.H2-D6-C.X3....;
        1 2 2 2 2 2 2 2 8 8 4 8 4 4 2 2 2 2 4 2 2 2 4 2 2 2 2 1 2 2 4 4 4 2 2
        2 4 4 4 8 4 4 2 4 4 4 2 4 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 8...

        FingerprintsVector;TopologicalAtomTriplets:SYBYLAtomTypes:MinDistance1
        :MaxDistance10;2332;NumericalValues;IDsAndValuesString;C.2-D1-C.2-D9-C
        .3-D10 C.2-D1-C.2-D9-C.ar-D10 C.2-D1-C.3-D1-C.3-D2 C.2-D1-C.3-D10-C.3-
        D9 C.2-D1-C.3-D2-C.3-D3 C.2-D1-C.3-D2-C.ar-D3 C.2-D1-C.3-D3-C.3-D4 C.2
        -D1-C.3-D3-N.ar-D4 C.2-D1-C.3-D3-O.3-D2 C.2-D1-C.3-D4-C.3-D5 C.2-D1-C.
        3-D5-C.3-D6 C.2-D1-C.3-D5-O.3-D4 C.2-D1-C.3-D6-C.3-D7 C.2-D1-C.3-D7...

        FingerprintsVector;TopologicalPharmacophoreAtomPairs:ArbitrarySize:Min
        Distance1:MaxDistance10;54;NumericalValues;IDsAndValuesString;H-D1-H H
        -D1-NI HBA-D1-NI HBD-D1-NI H-D2-H H-D2-HBA H-D2-HBD HBA-D2-HBA HBA-D2-
        HBD H-D3-H H-D3-HBA H-D3-HBD H-D3-NI HBA-D3-NI HBD-D3-NI H-D4-H H-D4-H
        BA H-D4-HBD HBA-D4-HBA HBA-D4-HBD HBD-D4-HBD H-D5-H H-D5-HBA H-D5-...;
        18 1 2 1 22 12 8 1 2 18 6 3 1 1 1 22 13 6 5 7 2 28 9 5 1 1 1 36 16 10
        3 4 1 37 10 8 1 35 10 9 3 3 1 28 7 7 4 18 16 12 5 1 2 1

        FingerprintsVector;TopologicalPharmacophoreAtomPairs:FixedSize:MinDist
        ance1:MaxDistance10;150;OrderedNumericalValues;ValuesString;18 0 0 1 0
        0 0 2 0 0 1 0 0 0 0 22 12 8 0 0 1 2 0 0 0 0 0 0 0 0 18 6 3 1 0 0 0 1
        0 0 1 0 0 0 0 22 13 6 0 0 5 7 0 0 2 0 0 0 0 0 28 9 5 1 0 0 0 1 0 0 1 0
        0 0 0 36 16 10 0 0 3 4 0 0 1 0 0 0 0 0 37 10 8 0 0 0 0 1 0 0 0 0 0 0
        0 35 10 9 0 0 3 3 0 0 1 0 0 0 0 0 28 7 7 4 0 0 0 0 0 0 0 0 0 0 0 18...

        FingerprintsVector;TopologicalPharmacophoreAtomTriplets:ArbitrarySize:
        MinDistance1:MaxDistance10;696;NumericalValues;IDsAndValuesString;Ar1-
        Ar1-Ar1 Ar1-Ar1-H1 Ar1-Ar1-HBA1 Ar1-Ar1-HBD1 Ar1-H1-H1 Ar1-H1-HBA1 Ar1
        -H1-HBD1 Ar1-HBA1-HBD1 H1-H1-H1 H1-H1-HBA1 H1-H1-HBD1 H1-HBA1-HBA1 H1-
        HBA1-HBD1 H1-HBA1-NI1 H1-HBD1-NI1 HBA1-HBA1-NI1 HBA1-HBD1-NI1 Ar1-...;
        46 106 8 3 83 11 4 1 21 5 3 1 2 2 1 1 1 100 101 18 11 145 132 26 14 23
        28 3 3 5 4 61 45 10 4 16 20 7 5 1 3 4 5 3 1 1 1 1 5 4 2 1 2 2 2 1 1 1
        119 123 24 15 185 202 41 25 22 17 3 5 85 95 18 11 23 17 3 1 1 6 4 ...

        FingerprintsVector;TopologicalPharmacophoreAtomTriplets:FixedSize:MinD
        istance1:MaxDistance10;2692;OrderedNumericalValues;ValuesString;46 106
        8 3 0 0 83 11 4 0 0 0 1 0 0 0 0 0 0 0 0 21 5 3 0 0 1 2 2 0 0 1 0 0 0
        0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 101 18 11 0 0 145 132 26
        14 0 0 23 28 3 3 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 45 10 4 0
        0 16 20 7 5 1 0 3 4 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 5 ...

FUNCTIONS
    GetFingerprintsFileType
            $FileType = GetFingerprintsFileType($FileName);

        Returns fingerprints FileType of *FileName* determined using
        extension of file name. Possible FileType values: *FP, SD, Text*.
        Supported file name extensions for various file types are: FP -
        *fpf, fp*; SD - *sdf, sd*; Text - *csv, tsv*.

    NewFingerprintsFileIO
            $FingerprintsFileIO = NewFingerprintsFileIO(%IOParameters);

        Using specified *IOParameters* property names and values hash,
        NewFingerprintsFileIO method creates a new object using appropriate
        fingerprints file IO class - FingerprintsFPFileIO,
        FingerprintsSDFileIO, or FingerprintsTextFileIO - and returns a
        reference to a newly created FingerprintsFileIO object.

        The *IOParameters* hash must contain *Name* and *Mode* as key/value
        pairs to create a new FingerprintsFileIO object.

        Based on type of file - FP, SD or Text - NewFingerprintsFileIO use
        new method from appropriate class - FingerprintsFPFileIO - along
        with *IOParameters* to create FingerprintsFileIO object.

    ReadAndProcessFingerpritsData
            ($CompoundIDsRef, $FingerprintsObjectRef) =
                            ReadAndProcessFingerpritsData($FingerprintsFileIO);

        Processes fingerprints bit-vector and vector string data in a file
        using *FingerprintsFileIO* object and returns a references to arrays
        of CompoundIDs and *FingerprintsObjects*.

        The file open and close is automatically performed during
        processing.

AUTHOR
    Manish Sud <msud@san.rr.com>

SEE ALSO
    FingerprintsFPFileIO.pm, FingerprintsSDFileIO.pm,
    FingerprintsTextFileIO.pm

COPYRIGHT
    Copyright (C) 2015 Manish Sud. All rights reserved.

    This file is part of MayaChemTools.

    MayaChemTools is free software; you can redistribute it and/or modify it
    under the terms of the GNU Lesser General Public License as published by
    the Free Software Foundation; either version 3 of the License, or (at
    your option) any later version.

