Mercurial > repos > deepakjadmin > mayatool2_test1

changeset 0:5bc834b2ee27 draft

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Uploaded
author deepakjadmin
date Wed, 20 Jan 2016 07:49:17 -0500
parents
children 09690f2b8239
files parse.xml tool_dependencies.xml
diffstat 2 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/parse.xml	Wed Jan 20 07:49:17 2016 -0500
@@ -0,0 +1,16 @@
+<?xml version="1.0"?>
+<tool id="aaacaret005" name="Extract IDs From Prediction Result" version="0.0.1">
+<description>This tool parse the compound name/ids from prediction result</description>
+<command> 
+awk -F '\t' '{print $1}' $predictionfile | sed '1d' | sed 's/"//g' | sed -e 's/^[ \t]*//;s/[ \t]*$//' &gt;$Selected_Ids ;
+ </command>
+
+<inputs>
+<param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file obtained from the tool 'Extract_Compound_IDs_From_Prediction_Result_based_on_scores'" /> 
+</inputs>
+<outputs>
+<data name="Selected_Ids" type="data" format="txt" label="Ids-${predictionfile.name}" />
+</outputs>
+<help>
+</help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jan 20 07:49:17 2016 -0500
@@ -0,0 +1,8 @@
+<?xml version="1.0"?>
+<tool_dependency>
+
+<!--set_environment version="1.0">
+        <environment_variable name="MAYA_TOOL1_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>   
+        </set_environment-->
+   
+</tool_dependency>