Mercurial > repos > deepakjadmin > mayatool1_test1
changeset 1:b27fcd214692 draft default tip
Uploaded
| author | deepakjadmin |
|---|---|
| date | Tue, 20 Sep 2016 12:35:33 -0400 |
| parents | af08995fd952 |
| children | |
| files | condition.R select_mol.xml tool_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 5 deletions(-) [+] |
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--- a/condition.R Wed Jan 20 05:17:11 2016 -0500 +++ b/condition.R Tue Sep 20 12:35:33 2016 -0400 @@ -10,10 +10,9 @@ compound <- rownames(refined) refined <- cbind(compound,refined) } else if((arg4 == "Inactive") ){ -#refined <- asd[asd[,1] <= as.numeric(arg2),] refined <- asd[asd[,2] >= as.numeric(arg3) & asd[,2] <= as.numeric(arg2),] compound <- rownames(refined) -refined <- cbind(compound,refined)} -###write.table(dw,file=args3,row.names=FALSE,sep="\t") +refined <- cbind(compound,refined) +} write.table(refined,file=arg5,row.names=FALSE,sep="\t")
--- a/select_mol.xml Wed Jan 20 05:17:11 2016 -0500 +++ b/select_mol.xml Tue Sep 20 12:35:33 2016 -0400 @@ -3,7 +3,8 @@ <description>This tool extracts compounds from prediction result based on given score</description> <requirements> <requirement type="set_environment">MAYA_TOOL1_PATH</requirement> - + <requirement type="set_environment">R_ROOT_DIR</requirement> + <requirement type="package" version="3.2.0">R</requirement> </requirements>
--- a/tool_dependencies.xml Wed Jan 20 05:17:11 2016 -0500 +++ b/tool_dependencies.xml Tue Sep 20 12:35:33 2016 -0400 @@ -4,5 +4,7 @@ <set_environment version="1.0"> <environment_variable name="MAYA_TOOL1_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> - + <package name="R" version="3.2.0"> + <repository changeset_revision="7833b0ebf8d6" name="package_r_3_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> </tool_dependency>