# HG changeset patch
# User deepakjadmin
# Date 1474389333 14400
# Node ID b27fcd2146924aada76b4d7178cc2aa10d8aabd5
# Parent  af08995fd952c22acb33cbae3a2916bed30e82c6
Uploaded

diff -r af08995fd952 -r b27fcd214692 condition.R
--- a/condition.R	Wed Jan 20 05:17:11 2016 -0500
+++ b/condition.R	Tue Sep 20 12:35:33 2016 -0400
@@ -10,10 +10,9 @@
 compound  <- rownames(refined)
 refined <- cbind(compound,refined)
 } else if((arg4 == "Inactive") ){
-#refined <- asd[asd[,1] <= as.numeric(arg2),] 
 refined <- asd[asd[,2] >= as.numeric(arg3) & asd[,2] <= as.numeric(arg2),]
 compound  <- rownames(refined)
-refined <- cbind(compound,refined)}
-###write.table(dw,file=args3,row.names=FALSE,sep="\t")
+refined <- cbind(compound,refined)
+}
 write.table(refined,file=arg5,row.names=FALSE,sep="\t")
 
diff -r af08995fd952 -r b27fcd214692 select_mol.xml
--- a/select_mol.xml	Wed Jan 20 05:17:11 2016 -0500
+++ b/select_mol.xml	Tue Sep 20 12:35:33 2016 -0400
@@ -3,7 +3,8 @@
 <description>This tool extracts compounds from prediction result based on given score</description>
 <requirements>
        <requirement type="set_environment">MAYA_TOOL1_PATH</requirement>
-    
+    <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
    
 </requirements>
 
diff -r af08995fd952 -r b27fcd214692 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jan 20 05:17:11 2016 -0500
+++ b/tool_dependencies.xml	Tue Sep 20 12:35:33 2016 -0400
@@ -4,5 +4,7 @@
 <set_environment version="1.0">
         <environment_variable name="MAYA_TOOL1_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>   
         </set_environment>
-   
+    <package name="R" version="3.2.0">
+                        <repository changeset_revision="7833b0ebf8d6" name="package_r_3_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                        </package>
 </tool_dependency>