# HG changeset patch
# User deepakjadmin
# Date 1443007926 14400
# Node ID 0852fc3ba0ecd21797abf2329b3c783ad510d1f8
Uploaded
diff -r 000000000000 -r 0852fc3ba0ec testing.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/testing.xml Wed Sep 23 07:32:06 2015 -0400
@@ -0,0 +1,15 @@
+
+ R version and installation test
+
+ R_ROOT_DIR
+ R
+
+ /bin/which R > $output_file;
+ /bin/which \$R_ROOT_DIR/bin/R >> $output_file;
+ echo \$R_ROOT_DIR >> $output_file;
+ echo \$PATH >> $output_file;
+
+
+
+
+
diff -r 000000000000 -r 0852fc3ba0ec tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Wed Sep 23 07:32:06 2015 -0400
@@ -0,0 +1,52 @@
+
+
+
+
+
+
+ http://cran.r-project.org/src/base/R-3/R-3.2.0.tar.gz
+
+ R-3.2.0
+ $INSTALL_DIR
+
+ ./configure --with-tcltk \
+ --with-blas \
+ --with-lapack \
+ --with-readline \
+ --with-cairo \
+ --with-libpng \
+ --without-x \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --libdir=$INSTALL_DIR/lib \
+ --prefix=$INSTALL_DIR
+ make
+ make install
+
+
+ $INSTALL_DIR/bin
+ $INSTALL_DIR/R-3.2.0/bin
+
+
+
+
+
+ hdsj
+
+
+
+
+
+
+
+ https://bioarchive.galaxyproject.org/limma_3.25.3.tar.gz
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+
+
+
+
+limma_3.24.12 installed now try edgeR
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+
+
+