comparison tool_dependencies.xml @ 0:0852fc3ba0ec draft default tip

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0:0852fc3ba0ec

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.2.0">
        <install version="1.0">
        <actions_group>
            <actions>
                <action type="download_by_url">http://cran.r-project.org/src/base/R-3/R-3.2.0.tar.gz</action>
                 <action type="move_directory_files">
                        <source_directory>R-3.2.0</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                <action type="shell_command">./configure --with-tcltk \
                                    --with-blas \
                                    --with-lapack \
                                    --with-readline \
                                    --with-cairo \
                                    --with-libpng \
                                    --without-x \
                                    --enable-R-shlib \
                                    --disable-R-framework \
                                    --libdir=$INSTALL_DIR/lib \
                                    --prefix=$INSTALL_DIR </action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
               
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/R-3.2.0/bin</environment_variable>
                </action>
            </actions>
  </actions_group>
  </install>
        <readme>
        hdsj
        </readme>
    </package>
    <package name="limma" version="3.24.12">
        <install version="1.0">
            <actions>
				<action type="setup_r_environment">
				<package name="R" version="3.2.0" />
			<package>https://bioarchive.galaxyproject.org/limma_3.25.3.tar.gz</package>
                </action>
             </actions>
             
        </install>
        <readme>
limma_3.24.12 installed now try edgeR 
        </readme>
    </package>
    
</tool_dependency>