Mercurial > repos > deepakjadmin > limmatest3
diff tool_dependencies.xml @ 0:d5ba7b2e1739 draft default tip
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author | deepakjadmin |
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date | Wed, 23 Sep 2015 07:07:41 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Sep 23 07:07:41 2015 -0400 @@ -0,0 +1,37 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.2.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://cran.r-project.org/src/base/R-3/R-3.2.0.tar.gz</action> + <action type="shell_command">./configure</action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + <action type="move_file"> + <source>R.3.2.0</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> +R-3.2.0 installed now try edgeR + </readme> + </package> + <package name="limma" version="3.24.12"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <package name="R" version="3.2.0" /> + <package>http://bioconductor.org/packages/release/bioc/src/contrib/limma_3.24.12.tar.gz</package> + </action> + </actions> + </install> + <readme> +limma_3.24.12 installed now try edgeR + </readme> + </package> + +</tool_dependency>