Mercurial > repos > deepakjadmin > edger_test1

changeset 0:8d7885ca2c72 draft default tip

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author deepakjadmin
date Wed, 23 Sep 2015 13:27:23 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Sep 23 13:27:23 2015 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+   <package name="R" version="3.2.0">
+        <repository changeset_revision="d973c8e9b29e" name="package_r_3_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="limma" version="3.24.12">
+        <install version="1.0">
+            <actions>
+		<action type="setup_r_environment">
+			<repository changeset_revision="d973c8e9b29e" name="package_r_3_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                          <package name="R" version="3.2.0" />
+                        </repository>
+				<package>https://bioarchive.galaxyproject.org/limma_3.25.3.tar.gz?raw=true</package>
+				<package>http://bioconductor.org/packages/release/bioc/src/contrib/edgeR_3.10.2.tar.gz?raw=true</package>
+                </action>
+             </actions>
+             
+        </install>
+        <readme>
+limma_3.24.12 installed now try edgeR 
+        </readme>
+    </package>
+    
+</tool_dependency>