Mercurial > repos > deepakjadmin > caret_tools_test_1

changeset 1:4eb8259dec95 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author deepakjadmin
date Fri, 25 Sep 2015 13:48:05 -0400
parents 463a876ec2cf
children aaf06aa28bdb
files carettest.xml test.R
diffstat 2 files changed, 0 insertions(+), 33 deletions(-) [+]
line wrap: on
line diff
--- a/carettest.xml	Fri Sep 25 06:19:00 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-<tool id="danmofdgk03dls" name="R 3.2.0 caret installation test" version="1.0.0">
-  <description>R version and installation test</description>
-<requirements>
-     <requirement type="set_environment">R_ROOT_DIR</requirement>
-    <requirement type="package" version="3.2.0">R</requirement>
-    <requirement type="package" version="1.0.0">caret-tools</requirement>
-</requirements>
-  <command>   	 GALAXY_ROOT_DIR=`pwd`; 
-  		 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
-                 cd ../../../../;
-                 GALAXY_ROOT_DIR=`pwd`;
-                 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
-                 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output  &gt; $log 2&gt;&amp;1
-   </command>
-  <outputs>
-    <data type="data" format="RData" name="output" label ="R-environment" />
-    <data format="txt" name="log" label ="packages loaded" />
-  </outputs>
-  <help>
- 
-  </help>
-</tool>
-
--- a/test.R	Fri Sep 25 06:19:00 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
-args <- commandArgs(T)
-arg1 <- args[1] ## Reae Input prediction file
-library("Rcpp")
-library("Hmisc")
-library("caret")
-library("randomForest")
-library("e1071")
-libray("pROC")
-asd <- sessionInfo()
-save(asd,file=arg1)