# HG changeset patch
# User deepakjadmin
# Date 1453481822 18000
# Node ID f6a619aafe81c7a7c5d5540b0561ea1c6e9dee8e
# Parent  dce3c80d51677c5d3870dd8bc3f84ad4c4a975bd
Deleted selected files

diff -r dce3c80d5167 -r f6a619aafe81 tool2.xml
--- a/tool2.xml	Fri Jan 22 11:46:48 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,590 +0,0 @@
-<tool id="cddssddspqapsssp2" name="Create script from the template file ">
-<description>
- used to create script file from user given input to build a model
-</description>
-<requirements>
-        <requirement type="set_environment">CARET_TOOL2_PATH</requirement>
-                 <requirement type="set_environment">R_ROOT_DIR</requirement>
-    <requirement type="package" version="3.2.0">R</requirement>
-    <requirement type="package" version="1.0.0">caret-tools</requirement>
-</requirements>
-<command interpreter="python">
-#if $OPTION11.PARAMETERS == "Advance"
-modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.CON1.MISSINGFILTEREVAL --missingfilterecho $OPTION11.CON1.MISSINGFILTERECHO --missingfilterresult $OPTION11.CON1.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.CON1.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.CON1.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.CON2.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.CON2.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.CON2.INITIALDATASPLITRESULT --saampling $OPTION11.CON2.SAAMPLING --percent $OPTION11.CON2.PERCENT --nzveval $OPTION11.CON3.NZVEVAL --nzvresult $OPTION11.CON3.NZVRESULT --nzvecho $OPTION11.CON3.NZVECHO --corrfiltereval $OPTION11.CON4.CORRFILTEREVAL --corrfilterresult $OPTION11.CON4.CORRFILTERRESULT --corrfilterecho $OPTION11.CON4.CORRFILTERECHO --threshholdcor $OPTION11.CON4.THRESHHOLDCOR --preproceval $OPTION11.CON5.PREPROCEVAL  --preprocecho $OPTION11.CON5.PREPROCECHO --preprocresult $OPTION11.CON5.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.CON6.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.CON6.SETUPRESAMPLINGRESULT --resampname $OPTION11.CON6.RESAMPNAME --resamplenumber $OPTION11.CON6.RESAMPLENUMBER --numrepeat $OPTION11.CON6.NUMREPEAT --resamplenumberpercent $OPTION11.CON6.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --classprobstexresult1 $OPTION11.CLASSPROBSTEXRESULT1 --classprobstexecho1 $OPTION11.CLASSPROBSTEXECHO1 --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --datasets $datasets --outputmodel $model --outputresultpdf $document;
-#end if
-#if $OPTION11.PARAMETERS == "basic"
-modelBuilding.py --method $METHOD $RDATA --getdatainfoeval $OPTION11.GETDATAINFOEVAL --getdatainfoecho $OPTION11.GETDATAINFOECHO --getdatainforesult $OPTION11.GETDATAINFORESULT --missingfiltereval $OPTION11.MISSINGFILTEREVAL --missingfilterecho $OPTION11.MISSINGFILTERECHO --missingfilterresult $OPTION11.MISSINGFILTERRESULT --missingfilterthreshc $OPTION11.MISSINGFILTERTHRESHC --missingfilterthreshr $OPTION11.MISSINGFILTERTHRESHR --pcaeval $OPTION11.PCAEVAL --pcaecho $OPTION11.PCAECHO --pcaresult $OPTION11.PCARESULT --pcacomp $OPTION11.PCACOMP --pcaploteval $OPTION11.PCAPLOTEVAL --pcaplotecho $OPTION11.PCAPLOTECHO --pcaplotresult $OPTION11.PCAPLOTRESULT --pcaplotfig $OPTION11.PCAPLOTFIG --initialdataspliteval $OPTION11.INITIALDATASPLITEVAL --initialdatasplitecho $OPTION11.INITIALDATASPLITECHO --initialdatasplitresult $OPTION11.INITIALDATASPLITRESULT --saampling $OPTION11.SAAMPLING --percent $OPTION11.PERCENT --nzveval $OPTION11.NZVEVAL --nzvresult $OPTION11.NZVRESULT --nzvecho $OPTION11.NZVECHO --corrfiltereval $OPTION11.CORRFILTEREVAL --corrfilterresult $OPTION11.CORRFILTERRESULT --corrfilterecho $OPTION11.CORRFILTERECHO --threshholdcor $OPTION11.THRESHHOLDCOR --preproceval $OPTION11.PREPROCEVAL  --preprocecho $OPTION11.PREPROCECHO --preprocresult $OPTION11.PREPROCRESULT --setupworkersecho $OPTION11.SETUPWORKERSECHO --setupworkersresult $OPTION11.SETUPWORKERSRESULT --numworkers $OPTION11.NUMWORKERS --setupresamplingecho $OPTION11.SETUPRESAMPLINGECHO --setupresamplingresult $OPTION11.SETUPRESAMPLINGRESULT --resampname $OPTION11.RESAMPNAME --resamplenumber $OPTION11.RESAMPLENUMBER --numrepeat $OPTION11.NUMREPEAT --resamplenumberpercent $OPTION11.RESAMPLENUMBERPERCENT --setupgridresult $OPTION11.SETUPGRIDRESULT --setupgridecho $OPTION11.SETUPGRIDECHO --setupgridsize $OPTION11.SETUPGRIDSIZE --fitmodelresult $OPTION11.FITMODELRESULT --fitmodelecho $OPTION11.FITMODELECHO --fitmodeleval $OPTION11.FITMODELEVAL --modeldescrecho $OPTION11.MODELDESCRECHO --modeldescrresult $OPTION11.MODELDESCRRESULT --resamptableecho $OPTION11.RESAMPTABLEECHO --resamptableresult $OPTION11.RESAMPTABLERESULT --profileplotecho $OPTION11.PROFILEPLOTECHO --profileplotfig $OPTION11.PROFILEPLOTFIG --stopworkersecho $OPTION11.STOPWORKERSECHO --stopworkersresult $OPTION11.STOPWORKERSRESULT --testpredresult $OPTION11.TESTPREDRESULT --testpredecho $OPTION11.TESTPREDECHO --classprobstexresult $OPTION11.CLASSPROBSTEXRESULT --classprobstexecho $OPTION11.CLASSPROBSTEXECHO --classprobstexresult1 $OPTION11.CLASSPROBSTEXRESULT1 --classprobstexecho1 $OPTION11.CLASSPROBSTEXECHO1 --savedataecho $OPTION11.SAVEDATAECHO --savedataresult $OPTION11.SAVEDATARESULT --datasets $datasets --outputmodel $model --outputresultpdf $document;
-#end if
-
- </command> 
-<inputs>
-	<param name="METHOD" type="select" label="SELECT METHOD FOR MODEL BUILDING" >
-		<option value="pls">Partial Least Square</option>
-		<option value="nnet">Neural Network</option>
-		<option value="bagFDA">bag-Fourier Discriminant Analysis</option>
-		<option value="blackboost">black-boost- Boosting Method</option>
-		<option value="earth">Earth-MARS based method</option>
-		<option value="rf">Random Forest</option>
-		<option value="RRF">RRFglobal -Variant of Random Forest</option>
-		<option value="svmRadial">SVM-Radial</option> 
-		<option value="svmPoly">SVM-Polynomial</option>
-		<option value="ada">ada-boost</option>
-		<option value="glm">Generalised linear model </option>
-		<option value="treebag">tree based bagging method</option>
-		<option value="nb">Naive Bayes</option>
-		<option value="knn">K-nearest neighbour</option>
-		<option value="C5.0">C5.0 </option>
-	</param>
-	<param name="RDATA" format="RData" type="data" label="SELECT FILE CONATINING INPUT DATA" help="RData format" />
-	
-	
-	<conditional name="OPTION11">
-		<param name="PARAMETERS" type="select">
-            		<option value="basic" selected="TRUE" >Use optimized parameters </option>
-            		<option value="Advance"> Customized parameters </option>
-        	</param>
-       
-       		<when value="basic">
-        
- 	 <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />	
-	
-	<param name="GETDATAINFOECHO" type="hidden" value="FALSE"  help="set True if wish to print. default is False"/>
-        <param name="GETDATAINFORESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-		
-	<param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-	
-	<param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="MISSINGFILTERRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="MISSINGFILTERTHRESHC" type="hidden" value="0.2"  help="For column wise default is 0.2"/>
-	
-	<param name="MISSINGFILTERTHRESHR" type="hidden" value="0.2"  help="For row wise default is 0.2"/>
-	
-	<param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-	
-	<param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
-		
-	<param name="PCARESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-	
-	<param name="PCACOMP" type="hidden" value="3" help="set according to need. Default is 3"/>
-		
-	<param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>	
-		
-	<param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
-		
-	<param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-   	<param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-	
-	<param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>	
-	
-	<param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-	
-        <param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/>
-	
-	<param name="INITIALDATASPLITRESULT" type="hidden" value="tex"  help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-  	<param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
-		
-   	<param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-		
-	<param name="NZVRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="NZVECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
-		
-	<param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-	
-	<param name="CORRFILTERRESULT" type="hidden" value="tex"  help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="CORRFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-	
-	<param name="THRESHHOLDCOR" type="hidden" value="0.75" help="set according to need .default is 0.75"/>
-		
-	<param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-		
-	<param name="PREPROCECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="PREPROCRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="SETUPWORKERSEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. default is False"/>	
-		
-	<param name="SETUPWORKERSECHO" type="hidden" value="FALSE" label="Write Code in Document" help="set True if wish to print .default is False"/>
-		
-	<param name="SETUPWORKERSRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="NUMWORKERS" type="hidden" value="1" help ="default is 1"/>
-		
-   	<param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-		
-         <param name="RESAMPNAME" type="hidden" value="boot632" label="Set type of resampling for cross validation" help="default is boot632"/>
-
-	<param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
-	
-        <param name="NUMREPEAT" type="hidden" value="3" label="Set Number of Times to run" help="default is 3"/>
-
-	<param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
-
-	<param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-	
-  	<param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="SETUPGRIDSIZE" type="hidden" value="3" help="default is 3 "/>
-		
-	<param name="FITMODELEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-		
-	<param name="FITMODELRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-	
-	<param name="FITMODELECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="MODELDESCRECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-	
-	<param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>	
-		
-	<param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-	<param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-	
- 	<param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
-	
-	<param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-	<param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"	/>
-		
-	<param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-		
-	<param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False"	/>
-		
-	<param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-		
-	<param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-		
-        </when>
-
-      
-        <when value="Advance">
-        <param name="GETDATAINFOEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE" />
-        <param name="GETDATAINFOECHO" type="hidden" value="FALSE"  help="set True if wish to print. default is False"/>
-        <param name="GETDATAINFORESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-	
-        <conditional name="CON1">   
-          <param name="PARAMAETERS1" type="select" label="1. REMOVE MISSING VALUES FROM THE INPUT DATA">
-                        <option value="YES">YES </option>
-                        <option value="NO" selected="true">NO </option>
-                </param>
-
-                <when value="YES">
-        <param name="MISSINGFILTEREVAL" type="hidden" value= "TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
-	<param name="MISSINGFILTERECHO" type="select" label="1(i). Write Code in Document" help="set True if wish to print .default is False"	>
-		<option value="FALSE" selected="true">false</option>
-		<option value="TRUE">true</option>
-	</param>
-	<param name="MISSINGFILTERRESULT" type="select" label="1(ii). Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
-		<option value="hide">hide-result will not written in file</option>
-		<option value="tex" selected="true">tex-result will written in file</option>
-   	</param>
-	<param name="MISSINGFILTERTHRESHC" type="select" label="1(iii). Set Cutoff Value for Missing Data value Columwise" help="For column wise default is 0.1 means column which has missing value more than 10% will be removed ">
-		<option value="0.1">0.1</option>
-		<option value="0.2">0.2</option>
-		<option value="0.25">0.25</option>
-		<option value="0.3">0.3</option>
-		<option value="0.35">0.35</option>
-		<option value="0.4">0.4</option>
-		<option value="0.45">0.45</option>
-		<option value="0.5">0.5</option>
-		<option value="0.55">0.55</option>
-		<option value="0.6">0.6</option>
-		<option value="0.65">0.65</option>
-		<option value="0.7">0.7</option>
-		<option value="0.75">0.75</option>
-		<option value="0.8">0.8</option>
-	</param>
-	<param name="MISSINGFILTERTHRESHR" type="select" label="1(iv). Set Cutoff Value for Missing Data Value Rowwise " help="For row wise default is 0.1 means row having more than 10% missing values will be removed">
-		<option value="0.1">0.1</option>
-		<option value="0.2">0.2</option>
-		<option value="0.25">0.25</option>
-		<option value="0.3">0.3</option>
-		<option value="0.35">0.35</option>
-		<option value="0.4">0.4</option>
-		<option value="0.45">0.45</option>
-		<option value="0.5">0.5</option>
-		<option value="0.55">0.55</option>
-		<option value="0.6">0.6</option>
-		<option value="0.65">0.65</option>
-		<option value="0.7">0.7</option>
-		<option value="0.75">0.75</option>
-		<option value="0.8">0.8</option>
-	</param>
-</when>
-<when value="NO">
-        <param name="MISSINGFILTEREVAL" type="hidden" value= "FALSE" help="set TRUE if wish to evaluate. default is FALSE"/>
-
-        <param name="MISSINGFILTERECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="MISSINGFILTERRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-        <param name="MISSINGFILTERTHRESHC" type="hidden" value="0"  />
-
-        <param name="MISSINGFILTERTHRESHR" type="hidden" value="0" />
-
-</when>
-</conditional>
-
-        <param name="PCAEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
-
-        <param name="PCAECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
-
-        <param name="PCARESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-        <param name="PCACOMP" type="select" label="2. FIND NUMBER OF PRINCIPLE COMPONENT" help="performs PCA and gives number of PC. Default is 3 ">
-                <option value="3">3</option>
-                <option value="4">4</option>
-                <option value="5">5</option>
-                <option value="6">6</option>
-                <option value="7">7</option>
-                <option value="8">8</option>
-                <option value="9">9</option>
-                <option value="10">10</option>
-        </param>
-
-        <param name="PCAPLOTEVAL" type="hidden" value="TRUE" help="set TRUE if wish to plot PCA. default is TRUE"/>
-
-        <param name="PCAPLOTECHO" type="hidden" value="FALSE" help="Set True if wish to Print .default is False"/>
-
-        <param name="PCAPLOTRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-
-        <param name="PCAPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
-
-
- <conditional name="CON2">
-          <param name="PARAMAETERS2" type="select" label="3. CUSTOMIZE PARAMETERS FOR DATA SPLITTING " help="splits data in test and train set.">
-                        <option value="YES2">YES </option>
-                        <option value="NO2" selected="true">NO </option>
-                </param>
-  <when value="YES2">
-   <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
-   <param name="SAAMPLING" type="select"  label="3(i). Select Sampling Method" help="Defualt is with No sampling. you may choose downsample or upsample" >
-                <option value="garBage" selected="true">No Sampling</option>
-                <option value="downsampling">downsample</option>
-                <option value="upsampling">upsample</option>
-        </param>
-  <param name="INITIALDATASPLITECHO" type="select" label="3(ii). Write Code in Document" help="set True if wish to print .default is False"      >
-                <option value="FALSE">false</option>
-                <option value="TRUE">true</option>
-        </param>
-        <param name="INITIALDATASPLITRESULT" type="select" value="tex" label="3(iii).  Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
-                <option value="tex" selected="true">tex-result will written in file</option>
-                <option value="hide">hide-result will not written in file</option>
-        </param>
-    <param name="PERCENT" type="select" label="3(iv) .Set Value at Which Data Will be Splitted in Train and Test Set" help="default is 0.8">
-                <option value="0.8">0.8</option>
-                <option value="0.75">0.75</option>
-                <option value="0.6">0.6</option>
-                <option value="0.5">0.5</option>
-                <option value="2">use entire data set</option>
-    </param>	
-</when>
- <when value="NO2">
-  <param name="INITIALDATASPLITEVAL" type="hidden" value= "TRUE" help="set TRUE for splitting in test and train set.default is True"/>
-
-        <param name="INITIALDATASPLITECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="SAAMPLING" type="hidden" value="garBage" help="default is with No sampling"/>
-
-        <param name="INITIALDATASPLITRESULT" type="hidden" value="tex"  help="Set tex if wish to write in output pdf file. default is tex"/>
-
-        <param name="PERCENT" type="hidden" value="0.8" help="default is 0.8"/>
-
-</when>
-</conditional>  
-
-      <conditional name="CON3">
-          <param name="PARAMAETERS3" type="select" label="4. REMOVE NEAR ZERO VARIANCE " help="removes NZV from train and test set.">
-           <option value="YES3">YES </option>
-            <option value="NO3" selected="true">NO </option>
-                </param>
-<when value="YES3">
-
-      <param name="NZVEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
-
-     
-      <param name="NZVECHO" type="select" label="4(i).  Write Code in Document" help="set True if wish to print .default is False">
-                 <option value="FALSE">false</option>
-                <option value="TRUE">true</option>
-        </param>
-
-      <param name="NZVRESULT" type="select" label="4(ii).  Write Result in document" help="Set tex if wish to write result in output pdf file. default is tex">
-		<option value="hide">hide-result will not written in file</option>
-		<option value="tex" selected="true">tex-result will written in file</option>
-   	 </param>
-</when>
-<when value="NO3">
-       <param name="NZVEVAL" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
-       <param name="NZVECHO" type="hidden" value="FALSE" help="set TRUE if wish to evaluate. "/>
-       <param name="NZVRESULT" type="hidden" value="hide" help="set TRUE if wish to evaluate."/>
-</when>
-</conditional>
-
-	<!--param name="NZVECHO" type="select" label="Write Code in Document" help="set True if wish to print .default is False">
-		<option value="FALSE">false</option>
-		<option value="TRUE">true</option>
-	</param-->
-
- <conditional name="CON4">
-          <param name="PARAMAETERS4" type="select" label="5. REMOVE CORRELATED VALUES" help="removes correlated attributes from train and test set.">
-           <option value="YES4">YES </option>
-            <option value="NO4" selected="true">NO </option>
-                </param>
-<when value="YES4">
-  <param name="CORRFILTEREVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
- <param name="THRESHHOLDCOR" type="select" label="5(i). cutoff for correlated Value " help="set according to need .default is 0.75 means attributes have 75% or more correlation are ommited from the data">
-                <option value="0.75">0.75</option>
-                <option value="0.4">0.4</option>
-                <option value="0.45">0.45</option>
-                <option value="0.5">0.5</option>
-                <option value="0.55">0.55</option>
-                <option value="0.6">0.6</option>
-                <option value="0.65">0.65</option>
-                <option value="0.7">0.7</option>
-                <option value="0.8">0.8</option>
-                <option value="0.85">0.85</option>
-                <option value="0.9">0.9</option>
-                <option value="0.95">0.95</option>
-        </param>
-   <param name="CORRFILTERECHO" type="select" label="5(ii).  Write Code in Document" help="set True if wish to print .default is False"    >
-                <option value="FALSE">false</option>
-                <option value="TRUE">true</option>
-        </param>
-   <param name="CORRFILTERRESULT" type="select" label="5(iii).  Write Result in document" help="Set tex if wish to write in output pdf file. default is tex">
-                <option value="hide">hide-result will not written in file</option>
-                <option value="tex" selected="true">tex-result will written in file</option>
-        </param>
-</when>
-<when value="NO4">
-        <param name="CORRFILTEREVAL" type="hidden" value="FALSE"/>
-
-        <param name="CORRFILTERRESULT" type="hidden" value="hide" />
-
-        <param name="CORRFILTERECHO" type="hidden" value="FALSE" />
-
-        <param name="THRESHHOLDCOR" type="hidden" value="0" />
-</when>
-</conditional>
-
-<conditional name="CON5">
-    <param name="PARAMAETERS5" type="select" label="6. PERFORM CENTERING AND SCALING OF DATA " help="centering and scaling of  train and test set.">
-           <option value="YES5">YES </option>
-            <option value="NO5" selected="true">NO </option>
-                </param>
-
-<when value="YES5">
- <param name="PREPROCEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
-  <param name="PREPROCECHO" type="select" label="6(i).  Write Code in Document" help="set True if wish to write code in document .default is False"       >
-                <option value="FALSE">false</option>
-                <option value="TRUE">true</option>
-        </param>
-        <param name="PREPROCRESULT" type="select" label="6(ii).  Write Result in document " help="Set tex if wish to write result in output pdf file. default is tex">
-                <option value="hide">hide-result will not written in file</option>
-                <option value="tex" selected="true">tex-result will written in file</option>
-        </param>
-</when>
-<when value="NO5">
-         <param name="PREPROCEVAL" type="hidden" value="FALSE"/>
-
-        <param name="PREPROCECHO" type="hidden" value="FALSE" />
-
-        <param name="PREPROCRESULT" type="hidden" value="hide" />
-
-</when>
-</conditional>
-
-    <param name="SETUPWORKERSEVAL" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is False"/>    
-    <param name="SETUPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
-    <param name="NUMWORKERS" type="select" label="7. SET NUMBER OF PROCESSORS " help ="default is 1">
-                <option value="1">1</option>
-                <option value="2">2</option>
-                <option value="4">4</option>
-                <option value="6">6</option>
-                <option value="8">8</option>
-                <option value="16">16</option>
-    </param>
-    <param name="SETUPWORKERSRESULT" type="hidden" value="hide" />
-                
-  <conditional name="CON6">
-
-   <param name="PARAMAETERS6" type="select" label="8. CUSTOMIZE RESAMPLING PARAMETERS" help="resampling for cross validation">
-           <option value="YES6">YES </option>
-            <option value="NO6" selected="true">NO </option>
-                </param>
-<when value="YES6">
-  <param name="SETUPRESAMPLINGECHO" type="select" label="8(i).  write code for resampling" help="set True if wish to print .default is False">
-                <option value="FALSE">false</option>
-                <option value="TRUE">true</option>
-        </param>
-        <param name="SETUPRESAMPLINGRESULT" type="select" label="8(ii).  Write Result in document " help="Set tex if wish to write in output pdf file. default is hide">
-                <option value="hide">hide-result will not written in file</option>
-                <option value="tex">tex-result will written in file</option>
-        </param>
- 
-
-   <param name="RESAMPNAME" type="select" label="8(iii). select  Resample method for cross validation" help="default is boot632 ">
-                <option value="boot632" selected="true">boot632</option>
-                <option value="boot">boot</option>
-                <option value="cv">cv</option>
-                <option value="repeatedcv">repeatedcv</option>
-                <option value="LOOCV">LOOCV - leave one out</option>
-        </param>
-
-       <param name="RESAMPLENUMBER" type="select" label="8(iv).  Set Number of times Resample" help="default is 10 ">
-                <option value="10" selected="true">10</option>
-                <option value="5">5</option>
-                <option value="15">15</option>
-                <option value="20">20</option>
-                <option value="25">25</option>
-        </param>
-
-        <param name="NUMREPEAT" type="select" label="8(v).  Set Number of times to repeat" help="default is 3 ">
-               <option value="3" selected="true">3</option>
-                <option value="1">1</option>
-                <option value="5">5</option>
-                <option value="10">10</option>
-        </param>
-        <param name="RESAMPLENUMBERPERCENT" type="select" label="8(vi).  Set Percent splitting of data for resampling" help="default is 0.75">
-                <option value="0.75" selected="true">0.75</option>
-                <option value="0.4">0.4</option>
-                <option value="0.45">0.45</option>
-                <option value="0.5">0.5</option>
-                <option value="0.55">0.55</option>
-                <option value="0.6">0.6</option>
-                <option value="0.65">0.65</option>
-                <option value="0.7">0.7</option>
-                <option value="0.8">0.8</option>
-        </param>
-</when>
-<when value="NO6">
-     
-        <param name="SETUPRESAMPLINGECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="SETUPRESAMPLINGRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-        <param name="RESAMPNAME" type="hidden" value="boot632" label="Set type of resampling for cross validation" help="default is boot632"/>
-
-        <param name="RESAMPLENUMBER" type="hidden" value="10" label="Set Number of Times to Resample" help="default is 10"/>
-
-        <param name="NUMREPEAT" type="hidden" value="3" label="Set Number of Times to run" help="default is 3"/>
-
-        <param name="RESAMPLENUMBERPERCENT" type="hidden" value="0.75" help="default is 0.75"/>
-
-
-</when>
-</conditional>
-        <param name="SETUPGRIDRESULT" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-        <param name="SETUPGRIDECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="SETUPGRIDSIZE" type="select" label="9.  SET SIZE OF GRID" help="default is 3 ">
-                <option value="3">3</option>
-                <option value="4">4</option>
-                <option value="5">5</option>
-                <option value="6">6</option>
-                <option value="7">7</option>
-                <option value="8">8</option>
-                <option value="9">9</option>
-                <option value="10">10</option>
-                <option value="11">11</option>
-                <option value="12">12</option>
-                <option value="13">13</option>
-                <option value="14">14</option>
-                <option value="15">15</option>
-                <option value="16">16</option>
-                <option value="17">17</option>
-                <option value="18">18</option>
-                <option value="19">19</option>
-                <option value="20">20</option>
-        </param>
-
-    <param name="FITMODELEVAL" type="boolean" checked="true" value="true" label="10. BUILD A MODEL AND WRITE RESULT IN DOCUMENT" help="default is TRUE"/>   
-    <param name="FITMODELRESULT" type="hidden" value="tex" />
-    <param name="FITMODELECHO" type="select" label="10(i).  Write Code for model building in Document" help="set True if wish to write code in document .default is False"      >
-            <option value="FALSE">false</option>
-            <option value="TRUE">true</option>
-        </param>
-    <param name="MODELDESCRECHO" type="select" label="10(ii).  Write code for Model Description " help="set True if wish to print .default is False" >
-                <option value="FALSE">false</option>
-                <option value="TRUE">true</option>
-        </param>
-    <param name="MODELDESCRRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-               
-    <param name="RESAMPTABLEECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="RESAMPTABLERESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-
-        <param name="PROFILEPLOTECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="PROFILEPLOTFIG" type="hidden" value="TRUE" help="set TRUE if wish to evaluate. default is TRUE"/>
-
-        <param name="STOPWORKERSECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="STOPWORKERSRESULT" type="hidden" value= "hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-        <param name="TESTPREDRESULT" type="hidden" value= "tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-
-        <param name="TESTPREDECHO" type="hidden" value="FALSE" help="set True if wish to print. default is False"/>
-
-        <param name="CLASSPROBSTEXRESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-
-        <param name="CLASSPROBSTEXECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"  />
-
-        <param name="CLASSPROBSTEXRESULT1" type="hidden" value="hide" help="Set tex if wish to write in output pdf file. default is hide"/>
-
-        <param name="CLASSPROBSTEXECHO1" type="hidden" value="FALSE" help="set True if wish to print .default is False" />
-
-        <param name="SAVEDATAECHO" type="hidden" value="FALSE" help="set True if wish to print .default is False"/>
-
-        <param name="SAVEDATARESULT" type="hidden" value="tex" help="Set tex if wish to write in output pdf file. default is tex"/>
-
-	</when>
-	</conditional>
-</inputs>
-
-<outputs>
-	<data format="RData" label="$METHOD Model" name="model" />
-	<data format="pdf"  label="Document for $METHOD" name="document" />
-	<data format="RData"  label="Datasets used for model building " name="datasets" />
-</outputs>		
-<help>
-
-.. class:: infomark
-
-
-
-**Instruction**
-
-----------
-
-Users may change any parameter as their requirement. For normal practice 
-
-user required to provide only input csv file and method for model building.
-
-More details are given in user manual.Please click here
-
-  
-
-
-</help>
-
-
-
-</tool>