Mercurial > repos > deepakjadmin > care_tool_jan21_test1
comparison tool1V2.xml @ 0:ee374e48024f draft default tip
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| author | deepakjadmin |
|---|---|
| date | Thu, 21 Jan 2016 00:34:58 -0500 |
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| -1:000000000000 | 0:ee374e48024f |
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| 1 <tool id="AdsmkdqaddodfdalV2" name="Prepare input file"> | |
| 2 <description> | |
| 3 This Tool Converts Input csv File into RData Which Is Further Used for Model Building | |
| 4 </description> | |
| 5 <!--command interpreter="bash">step1.sh $file1 $output1 </command--> | |
| 6 <requirements> | |
| 7 <requirement type="set_environment">R_ROOT_DIR</requirement> | |
| 8 <requirement type="package" version="3.2.0">R</requirement> | |
| 9 </requirements> | |
| 10 <command interpreter="Rscript">tool1/csv2rdatatrain.R $file1 $RData </command> | |
| 11 <inputs> | |
| 12 <param format="csv" name="file1" type="data" label="Select file containing training data" help="CSV format" /> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data format="RData" name="RData" label="Input RData" /> | |
| 16 </outputs> | |
| 17 <help> | |
| 18 .. class:: infomark | |
| 19 | |
| 20 **Input "csv file" format must be as given below :** | |
| 21 | |
| 22 | |
| 23 "",feature1,feaure2,feature3,..,activity | |
| 24 | |
| 25 | |
| 26 cpd1,623,0.4,3.4,..,Active | |
| 27 | |
| 28 cpd2,234,0.9,5.6,..,Inactive | |
| 29 | |
| 30 cpd3,567,0.5,3.14,..,Active | |
| 31 | |
| 32 cpd4,231,0.1,1.2,..,Inactive | |
| 33 | |
| 34 here "cpd" stands for name or id of a compound. It is rowname with no column header. | |
| 35 | |
| 36 | |
| 37 </help> | |
| 38 </tool> |
