diff tool-data/phiX_db.loc.sample @ 0:7caea40b2a30 draft

planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty

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+++ b/tool-data/phiX_db.loc.sample	Wed Oct 02 11:00:08 2019 -0400
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+# Copyright (C) 2014 INRA
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+#
+#This is a sample file that enables tools FROGS_filters to identify phix contaminant. You will #need to create or download Blast+ index.
+#download link : http://genoweb.toulouse.inra.fr/frogs_databanks/contaminants
+#Finally you will need to create phiX_db.loc file similar to this one in your galaxy
+#tool-data directory.The phiX_db.loc file has this format (longer white space characters are
+#TAB characters):
+#
+#<contaminant_name>	<name>	<file_path>
+#
+#First column will be the visible name in galaxy.
+#So, for example, if you had phix indexed stored in
+#/galaxy_databanks/phiX/ 
+#then the phiX_db.loc entry would look like this:
+#
+#
+# EXAMPLE FOR TEST :
+#phiX_test	phiX_test	${__HERE__}/phiX_db_data/phi.fa
+#
+#and your /galaxy_databanks/phiX/ directory
+#would contain index files:
+#
+#-rwxrwxr-x 1 gpascal FROGS 5535 16 sept.  2015 phi.fa
+#-rw-rwxr-- 1 gpascal FROGS  132 16 sept.  2015 phi.fa.nhr
+#-rw-rwxr-- 1 gpascal FROGS   88 16 sept.  2015 phi.fa.nin
+#-rw-rwxr-- 1 gpascal FROGS 1348 16 sept.  2015 phi.fa.nsq
+#
+