Mercurial > repos > dchristiany > frogs_data_manager
comparison data_manager/FROGS_data_manager.py @ 4:95d5191f1dc4 draft
planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
| author | dchristiany |
|---|---|
| date | Thu, 03 Oct 2019 03:15:17 -0400 |
| parents | 7caea40b2a30 |
| children | ac4fb9d97a51 |
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| 3:33553ca873df | 4:95d5191f1dc4 |
|---|---|
| 24 download = s.get(frogs_db_index_link) | 24 download = s.get(frogs_db_index_link) |
| 25 decoded_content = download.content.decode('utf-8') | 25 decoded_content = download.content.decode('utf-8') |
| 26 db_index = download.content.splitlines() | 26 db_index = download.content.splitlines() |
| 27 db_index = [line.split("\t") for line in db_index[1:]] | 27 db_index = [line.split("\t") for line in db_index[1:]] |
| 28 db_index = [line[:4]+[line[1]+"_"+line[2]+"_"+line[1]]+[line[4]] for line in db_index] #add column name | 28 db_index = [line[:4]+[line[1]+"_"+line[2]+"_"+line[1]]+[line[4]] for line in db_index] #add column name |
| 29 | 29 |
| 30 #get frogs dbs | 30 #get frogs dbs |
| 31 dir_name="frogs_db_"+time.strftime("%Y%m%d") | 31 dir_name="frogs_db_"+time.strftime("%Y%m%d") |
| 32 os.mkdir(dir_name) | 32 os.mkdir(dir_name) |
| 33 dbs=set([]) | 33 dbs=set([]) |
| 34 for line in db_index[:2]: | 34 for line in db_index[:2]: |