Mercurial > repos > dchristiany > data_manager_proteore_test

diff data_manager_conf.xml @ 0:55efb19f0b34 draft

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planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
author dchristiany
date Tue, 23 Oct 2018 04:59:28 -0400
parents
children 0902811604a3
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Tue Oct 23 04:59:28 2018 -0400
@@ -0,0 +1,49 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
+        <data_table name="protein_atlas">
+            <output>
+                <column name="id"/>
+                <column name="name" />
+                <column name="value" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="peptide_atlas">
+            <output>
+                <column name="id"/>
+                <column name="name" />
+                <column name="tissue" />
+                <column name="value" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}/${value}.tsv</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="id_mapping">
+            <output>
+                <column name="id" />
+                <column name="name" />
+                <column name="value" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>