Mercurial > repos > dchristiany > data_manager_proteore_test
comparison data_manager/resource_building.py @ 1:d98f0163932b draft
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
| author | dchristiany |
|---|---|
| date | Tue, 23 Oct 2018 05:06:49 -0400 |
| parents | 55efb19f0b34 |
| children |
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| 0:55efb19f0b34 | 1:d98f0163932b |
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| 49 path = os.path.join(target_directory, output_file) | 49 path = os.path.join(target_directory, output_file) |
| 50 unzip(url, path) #download and save file | 50 unzip(url, path) #download and save file |
| 51 tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y") | 51 tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y") |
| 52 tissue_id = tissue_name.replace(" ","_").replace("/","-") | 52 tissue_id = tissue_name.replace(" ","_").replace("/","-") |
| 53 | 53 |
| 54 data_table_entry = dict(id=tissue_id, name = tissue_name, value = tissue, , path = path) | 54 data_table_entry = dict(id=tissue_id, name = tissue_name, value = tissue, path = path) |
| 55 _add_data_table_entry(data_manager_dict, data_table_entry, "protein_atlas") | 55 _add_data_table_entry(data_manager_dict, data_table_entry, "protein_atlas") |
| 56 | 56 |
| 57 | 57 |
| 58 ####################################################################################################### | 58 ####################################################################################################### |
| 59 # 2. Peptide Atlas | 59 # 2. Peptide Atlas |