# HG changeset patch # User dchristiany # Date 1548427115 18000 # Node ID d235909789cac8092a115e49b92156bc44124b17 # Parent 592c59530c32443c554abd52c79a48b8b1da77cb planemo upload commit e694c4b0df30a4286ba09721696e8ec3af25fd97-dirty diff -r 592c59530c32 -r d235909789ca data_manager/resource_building.py --- a/data_manager/resource_building.py Thu Jan 24 12:06:21 2019 -0500 +++ b/data_manager/resource_building.py Fri Jan 25 09:38:35 2019 -0500 @@ -123,8 +123,8 @@ def id_mapping_sources (data_manager_dict, species, target_directory) : - human = species == "human" - species_dict = { "human" : "HUMAN_9606", "mouse" : "MOUSE_10090", "rat" : "RAT_10116" } + human = species == "Human" + species_dict = { "Human" : "HUMAN_9606", "Mouse" : "MOUSE_10090", "Rat" : "RAT_10116" } files=["idmapping_selected.tab.gz","idmapping.dat.gz"] #header @@ -218,8 +218,8 @@ w = csv.writer(out,delimiter='\t') w.writerows(tab) - name_dict={"human" : "Homo sapiens", "mouse" : "Mus musculus", "rat" : "Rattus norvegicus"} - name = name_dict[species]+" "+time.strftime("%d/%m/%Y") + name_dict={"Human" : "Homo sapiens", "Mouse" : "Mus musculus", "Rat" : "Rattus norvegicus"} + name = species +" (" + name_dict[species]+" "+time.strftime("%d/%m/%Y")+")" id = species+"_id_mapping_"+ time.strftime("%d-%m-%Y") data_table_entry = dict(id=id, name = name, value = species, path = path) @@ -276,7 +276,7 @@ def PPI_ref_files(data_manager_dict, species, interactome, target_directory): - species_dict={'human':'Homo sapiens',"mouse":"Mus musculus","rat":"Rattus norvegicus"} + species_dict={'Human':'Homo sapiens',"Mouse":"Mus musculus","Rat":"Rattus norvegicus"} ##BioGRID if interactome=="biogrid": diff -r 592c59530c32 -r d235909789ca data_manager/resource_building.xml --- a/data_manager/resource_building.xml Thu Jan 24 12:06:21 2019 -0500 +++ b/data_manager/resource_building.xml Fri Jan 25 09:38:35 2019 -0500 @@ -1,4 +1,4 @@ - + to create or update reference files for proteore tools @@ -52,9 +52,9 @@ - - - + + + @@ -64,9 +64,9 @@ - - - + + +